Wall clock time and date at job start Tue Mar 31 2020 12:49:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31419 * 1 3 3 Si 1.86801 * 120.00035 * 2 1 4 4 H 1.48495 * 109.47261 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47249 * 300.00563 * 3 2 1 6 6 H 1.48506 * 109.46989 * 60.00251 * 3 2 1 7 7 C 1.38952 * 120.00137 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00126 * 180.02562 * 7 2 1 9 9 N 1.37101 * 119.99723 * 359.97438 * 7 2 1 10 10 C 1.34773 * 119.99987 * 180.02562 * 9 7 2 11 11 O 1.21298 * 119.99631 * 0.02562 * 10 9 7 12 12 C 1.50694 * 120.00239 * 180.02562 * 10 9 7 13 13 N 1.46502 * 109.47393 * 180.02562 * 12 10 9 14 14 C 1.34778 * 120.00177 * 180.02562 * 13 12 10 15 15 O 1.21281 * 119.99976 * 359.97438 * 14 13 12 16 16 C 1.50698 * 119.99939 * 179.97438 * 14 13 12 17 17 C 1.52995 * 109.47419 * 179.97438 * 16 14 13 18 18 H 1.08998 * 110.09359 * 306.50902 * 17 16 14 19 19 O 1.45395 * 109.76977 * 68.18896 * 17 16 14 20 20 C 1.34344 * 109.00997 * 119.44639 * 19 17 16 21 21 O 1.21469 * 124.89996 * 179.80599 * 20 19 17 22 22 C 1.47427 * 110.20906 * 359.76274 * 20 19 17 23 23 C 1.39612 * 132.54692 * 179.97438 * 22 20 19 24 24 C 1.37948 * 119.79733 * 180.02562 * 23 22 20 25 25 C 1.38395 * 120.32098 * 359.97438 * 24 23 22 26 26 C 1.38493 * 120.21503 * 0.02853 * 25 24 23 27 27 C 1.37541 * 119.95026 * 359.97438 * 26 25 24 28 28 H 0.96992 * 119.99962 * 359.97438 * 1 2 3 29 29 H 0.96998 * 119.99983 * 0.02562 * 9 7 2 30 30 H 1.08997 * 109.47271 * 59.99866 * 12 10 9 31 31 H 1.09006 * 109.47188 * 300.00057 * 12 10 9 32 32 H 0.96998 * 119.99750 * 359.97438 * 13 12 10 33 33 H 1.08997 * 109.47396 * 59.99243 * 16 14 13 34 34 H 1.09006 * 109.46864 * 299.99557 * 16 14 13 35 35 H 1.07997 * 120.10551 * 0.06665 * 23 22 20 36 36 H 1.07995 * 119.83954 * 179.97438 * 24 23 22 37 37 H 1.07995 * 119.89293 * 180.02562 * 25 24 23 38 38 H 1.08000 * 120.02468 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.7082 1.3464 -0.0006 5 1 1.8894 2.3965 -1.2124 6 1 1.8895 2.3964 1.2126 7 6 2.0090 -1.2033 -0.0005 8 1 3.0889 -1.2033 -0.0001 9 7 1.3234 -2.3906 -0.0005 10 6 1.9973 -3.5578 -0.0005 11 8 3.2103 -3.5578 -0.0001 12 6 1.2438 -4.8629 -0.0011 13 7 2.1958 -5.9765 -0.0004 14 6 1.7466 -7.2472 -0.0013 15 8 0.5542 -7.4688 -0.0022 16 6 2.7259 -8.3926 -0.0011 17 6 1.9610 -9.7176 -0.0015 18 1 1.2460 -9.7376 0.8210 19 8 1.2753 -9.8892 -1.2721 20 6 1.7325 -11.0023 -1.8693 21 8 1.3529 -11.4199 -2.9450 22 6 2.7623 -11.6435 -1.0315 23 6 3.5299 -12.7978 -1.1972 24 6 4.4373 -13.1631 -0.2244 25 6 4.5902 -12.3908 0.9138 26 6 3.8323 -11.2444 1.0852 27 6 2.9246 -10.8709 0.1217 28 1 -0.4850 0.8400 0.0004 29 1 0.3535 -2.3906 -0.0005 30 1 0.6175 -4.9205 -0.8913 31 1 0.6168 -4.9209 0.8886 32 1 3.1495 -5.7992 0.0000 33 1 3.3520 -8.3352 0.8893 34 1 3.3531 -8.3344 -0.8907 35 1 3.4143 -13.4026 -2.0844 36 1 5.0311 -14.0561 -0.3517 37 1 5.3029 -12.6830 1.6707 38 1 3.9538 -10.6442 1.9748 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001261144645.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:49:49 Heat of formation + Delta-G solvation = -143.550512 kcal Electronic energy + Delta-G solvation = -24928.601533 eV Core-core repulsion = 20928.364896 eV Total energy + Delta-G solvation = -4000.236637 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.109 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.84313 -40.94844 -39.89647 -39.39098 -38.51474 -36.25592 -35.28817 -33.93213 -33.37424 -32.27036 -31.49780 -29.27829 -26.78542 -25.64738 -25.15776 -23.05270 -22.01553 -21.39420 -21.19449 -20.07615 -18.82519 -18.69081 -18.11734 -17.73968 -17.20472 -16.94762 -16.91046 -16.71353 -16.28561 -16.02164 -15.68024 -15.51438 -15.20903 -14.90736 -14.78166 -14.34738 -14.04536 -13.87422 -13.80285 -13.69513 -13.55492 -12.99234 -12.88064 -12.80674 -12.45113 -12.24384 -12.11240 -12.02884 -11.58306 -11.44248 -11.07715 -10.56480 -10.20933 -10.14018 -10.08779 -9.96409 -8.51730 -6.02021 -0.51005 0.21843 1.34455 1.34814 1.42848 1.56724 1.57291 1.90186 1.93012 1.98857 2.30687 2.65221 2.66244 2.95583 3.13871 3.15575 3.43285 3.74034 3.84655 4.05597 4.11938 4.22968 4.29184 4.33375 4.42527 4.44882 4.50172 4.58338 4.64067 4.92567 5.10034 5.26766 5.28703 5.38193 5.38245 5.58159 5.80968 5.91304 6.22736 6.44502 6.52262 7.02858 7.16121 7.43944 7.93320 8.65398 Molecular weight = 318.11amu Principal moments of inertia in cm(-1) A = 0.029723 B = 0.002163 C = 0.002084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 941.818720 B =12944.552373 C =13433.983091 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.013 4.013 3 Si 0.998 3.002 4 H -0.269 1.269 5 H -0.273 1.273 6 H -0.271 1.271 7 C -0.335 4.335 8 H 0.088 0.912 9 N -0.561 5.561 10 C 0.433 3.567 11 O -0.623 6.623 12 C 0.120 3.880 13 N -0.707 5.707 14 C 0.511 3.489 15 O -0.574 6.574 16 C -0.133 4.133 17 C 0.133 3.867 18 H 0.138 0.862 19 O -0.328 6.328 20 C 0.509 3.491 21 O -0.504 6.504 22 C -0.220 4.220 23 C -0.046 4.046 24 C -0.120 4.120 25 C -0.065 4.065 26 C -0.091 4.091 27 C -0.092 4.092 28 H 0.279 0.721 29 H 0.398 0.602 30 H 0.087 0.913 31 H 0.097 0.903 32 H 0.416 0.584 33 H 0.166 0.834 34 H 0.117 0.883 35 H 0.136 0.864 36 H 0.167 0.833 37 H 0.176 0.824 38 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.606 -25.357 6.038 28.141 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.213 4.213 3 Si 0.821 3.179 4 H -0.193 1.193 5 H -0.198 1.198 6 H -0.196 1.196 7 C -0.465 4.465 8 H 0.106 0.894 9 N -0.197 5.197 10 C 0.221 3.779 11 O -0.511 6.511 12 C -0.008 4.008 13 N -0.361 5.361 14 C 0.299 3.701 15 O -0.453 6.453 16 C -0.172 4.172 17 C 0.078 3.922 18 H 0.156 0.844 19 O -0.243 6.243 20 C 0.354 3.646 21 O -0.394 6.394 22 C -0.221 4.221 23 C -0.065 4.065 24 C -0.138 4.138 25 C -0.083 4.083 26 C -0.108 4.108 27 C -0.092 4.092 28 H 0.089 0.911 29 H 0.232 0.768 30 H 0.105 0.895 31 H 0.115 0.885 32 H 0.255 0.745 33 H 0.183 0.817 34 H 0.135 0.865 35 H 0.154 0.846 36 H 0.184 0.816 37 H 0.193 0.807 38 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges 10.062 -25.340 5.473 27.808 hybrid contribution -0.408 1.195 -0.538 1.372 sum 9.654 -24.145 4.935 26.468 Atomic orbital electron populations 1.69690 1.07049 1.29571 1.49415 1.26158 0.96546 1.02784 0.95843 0.84798 0.78176 0.76670 0.78256 1.19283 1.19829 1.19584 1.19777 0.92974 0.83494 1.50216 0.89449 1.41880 1.09612 1.04724 1.63451 1.20426 0.88144 0.85896 0.83480 1.90469 1.15040 1.87549 1.58001 1.20756 0.91836 0.84082 1.04091 1.45694 1.11416 1.04467 1.74525 1.20996 0.89806 0.84032 0.75311 1.90737 1.18439 1.85090 1.51079 1.22022 0.97550 0.88476 1.09184 1.21930 0.93326 0.92898 0.84023 0.84450 1.87417 1.60201 1.42070 1.34595 1.21218 0.79961 0.79193 0.84198 1.90820 1.61922 1.65156 1.21454 1.20771 1.02397 1.01078 0.97895 1.21135 0.92680 0.92759 0.99898 1.21631 0.97544 1.01452 0.93174 1.21982 0.96808 0.92094 0.97371 1.20806 0.93631 0.97925 0.98470 1.20729 0.97625 0.95191 0.95665 0.91100 0.76769 0.89471 0.88513 0.74520 0.81656 0.86492 0.84608 0.81583 0.80677 0.81243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.71 13.05 21.66 0.28 -48.42 16 2 C -0.01 -0.67 5.50 84.93 0.47 -0.20 16 3 Si 1.00 41.48 29.55 68.60 2.03 43.50 16 4 H -0.27 -11.11 7.11 99.48 0.71 -10.41 16 5 H -0.27 -10.98 7.11 99.48 0.71 -10.27 16 6 H -0.27 -10.79 7.11 99.48 0.71 -10.08 16 7 C -0.34 -18.30 9.68 84.04 0.81 -17.49 16 8 H 0.09 5.01 7.16 -2.91 -0.02 4.99 16 9 N -0.56 -27.93 5.29 -306.99 -1.62 -29.56 16 10 C 0.43 19.54 7.85 87.66 0.69 20.23 16 11 O -0.62 -31.13 15.24 -3.09 -0.05 -31.18 16 12 C 0.12 4.26 6.15 85.63 0.53 4.79 16 13 N -0.71 -21.12 5.53 -466.79 -2.58 -23.70 16 14 C 0.51 14.05 7.74 87.66 0.68 14.72 16 15 O -0.57 -20.32 15.55 5.98 0.09 -20.23 16 16 C -0.13 -2.24 5.43 29.85 0.16 -2.08 16 17 C 0.13 2.57 3.16 29.88 0.09 2.66 16 18 H 0.14 2.47 7.92 -2.39 -0.02 2.45 16 19 O -0.33 -9.68 10.27 -48.79 -0.50 -10.18 16 20 C 0.51 14.78 8.58 70.24 0.60 15.38 16 21 O -0.50 -18.13 18.04 19.63 0.35 -17.78 16 22 C -0.22 -4.32 6.27 -20.16 -0.13 -4.45 16 23 C -0.05 -0.65 10.10 22.53 0.23 -0.42 16 24 C -0.12 -0.79 10.02 22.24 0.22 -0.57 16 25 C -0.07 -0.26 10.05 22.37 0.22 -0.03 16 26 C -0.09 -0.60 10.03 22.17 0.22 -0.38 16 27 C -0.09 -1.31 5.68 -19.63 -0.11 -1.42 16 28 H 0.28 13.86 8.31 -92.71 -0.77 13.09 16 29 H 0.40 19.17 7.90 -92.71 -0.73 18.44 16 30 H 0.09 3.08 8.14 -2.39 -0.02 3.06 16 31 H 0.10 3.22 8.14 -2.38 -0.02 3.20 16 32 H 0.42 11.78 7.44 -92.71 -0.69 11.09 16 33 H 0.17 1.28 8.14 -2.39 -0.02 1.26 16 34 H 0.12 1.83 8.14 -2.38 -0.02 1.81 16 35 H 0.14 1.77 8.06 -2.91 -0.02 1.75 16 36 H 0.17 0.10 8.06 -2.91 -0.02 0.07 16 37 H 0.18 -0.53 8.06 -2.91 -0.02 -0.55 16 38 H 0.17 0.08 8.06 -2.91 -0.02 0.06 16 Total: -1.00 -79.25 343.61 2.42 -76.83 By element: Atomic # 1 Polarization: 30.24 SS G_CDS: -0.28 Total: 29.96 kcal Atomic # 6 Polarization: 26.06 SS G_CDS: 4.69 Total: 30.75 kcal Atomic # 7 Polarization: -97.76 SS G_CDS: -3.92 Total: -101.68 kcal Atomic # 8 Polarization: -79.26 SS G_CDS: -0.10 Total: -79.36 kcal Atomic # 14 Polarization: 41.48 SS G_CDS: 2.03 Total: 43.50 kcal Total: -79.25 2.42 -76.83 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261144645.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.721 kcal (2) G-P(sol) polarization free energy of solvation -79.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.417 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.829 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds