Wall clock time and date at job start Tue Mar 31 2020 12:49:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86794 * 120.00041 * 2 1 4 4 H 1.48496 * 109.47166 * 240.00064 * 3 2 1 5 5 H 1.48499 * 109.47206 * 0.02562 * 3 2 1 6 6 H 1.48507 * 109.47092 * 120.00363 * 3 2 1 7 7 C 1.38959 * 119.99990 * 180.02562 * 2 1 3 8 8 H 1.07991 * 119.99945 * 179.97438 * 7 2 1 9 9 N 1.37101 * 119.99493 * 359.97438 * 7 2 1 10 10 C 1.34781 * 119.99183 * 179.97438 * 9 7 2 11 11 O 1.21284 * 120.00319 * 0.02562 * 10 9 7 12 12 C 1.50706 * 119.99416 * 179.97438 * 10 9 7 13 13 N 1.46506 * 109.46759 * 179.97438 * 12 10 9 14 14 C 1.34772 * 119.99373 * 179.97438 * 13 12 10 15 15 O 1.21276 * 120.00726 * 0.02562 * 14 13 12 16 16 C 1.50703 * 119.99485 * 180.02562 * 14 13 12 17 17 C 1.53001 * 109.47246 * 180.02562 * 16 14 13 18 18 H 1.09002 * 110.05099 * 54.29619 * 17 16 14 19 19 O 1.45392 * 110.06614 * 292.81884 * 17 16 14 20 20 C 1.34344 * 109.01010 * 240.70858 * 19 17 16 21 21 O 1.21468 * 124.90024 * 180.02562 * 20 19 17 22 22 C 1.47423 * 110.20939 * 359.97438 * 20 19 17 23 23 C 1.39620 * 132.55116 * 179.97438 * 22 20 19 24 24 C 1.37938 * 119.80168 * 180.02562 * 23 22 20 25 25 C 1.38399 * 120.31937 * 359.97438 * 24 23 22 26 26 C 1.38484 * 120.21580 * 0.02562 * 25 24 23 27 27 C 1.37539 * 119.95212 * 359.97438 * 26 25 24 28 28 H 0.96998 * 119.99992 * 359.97438 * 1 2 3 29 29 H 0.96998 * 120.00568 * 359.97438 * 9 7 2 30 30 H 1.08994 * 109.47219 * 60.00176 * 12 10 9 31 31 H 1.09002 * 109.47241 * 300.00006 * 12 10 9 32 32 H 0.96999 * 120.00084 * 0.02562 * 13 12 10 33 33 H 1.09004 * 109.47227 * 60.00175 * 16 14 13 34 34 H 1.09002 * 109.47059 * 300.00158 * 16 14 13 35 35 H 1.08007 * 120.09653 * 0.04368 * 23 22 20 36 36 H 1.08003 * 119.84657 * 179.97438 * 24 23 22 37 37 H 1.08004 * 119.89226 * 179.97438 * 25 24 23 38 38 H 1.08007 * 120.02652 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.1018 1.6964 -1.2125 5 1 1.2832 2.7464 0.0006 6 1 3.1020 1.6963 1.2125 7 6 2.0089 -1.2034 -0.0005 8 1 3.0888 -1.2034 -0.0010 9 7 1.3233 -2.3907 -0.0005 10 6 1.9973 -3.5579 -0.0016 11 8 3.2101 -3.5579 -0.0021 12 6 1.2437 -4.8630 -0.0010 13 7 2.1957 -5.9766 -0.0030 14 6 1.7464 -7.2472 -0.0023 15 8 0.5541 -7.4688 -0.0006 16 6 2.7257 -8.3926 -0.0038 17 6 1.9607 -9.7177 -0.0033 18 1 1.2554 -9.7423 -0.8340 19 8 1.2540 -9.8852 1.2562 20 6 1.7056 -10.9931 1.8673 21 8 1.3114 -11.4049 2.9399 22 6 2.7479 -11.6379 1.0479 23 6 3.5164 -12.7888 1.2323 24 6 4.4380 -13.1584 0.2748 25 6 4.6037 -12.3944 -0.8672 26 6 3.8451 -11.2515 -1.0572 27 6 2.9233 -10.8737 -0.1090 28 1 -0.4850 0.8400 0.0004 29 1 0.3533 -2.3907 0.0002 30 1 0.6160 -4.9205 -0.8902 31 1 0.6180 -4.9209 0.8897 32 1 3.1494 -5.7993 -0.0040 33 1 3.3537 -8.3349 0.8853 34 1 3.3511 -8.3349 -0.8947 35 1 3.3895 -13.3880 2.1219 36 1 5.0332 -14.0484 0.4170 37 1 5.3276 -12.6900 -1.6122 38 1 3.9772 -10.6573 -1.9494 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001261144646.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:49:53 Heat of formation + Delta-G solvation = -118.740285 kcal Electronic energy + Delta-G solvation = -24929.686575 eV Core-core repulsion = 20930.525789 eV Total energy + Delta-G solvation = -3999.160785 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.109 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.02891 -39.61891 -38.70251 -38.21170 -37.49654 -34.50372 -33.71802 -33.14444 -31.70972 -31.42332 -30.78524 -27.83687 -25.38288 -24.67482 -24.16008 -22.38968 -21.13236 -20.18990 -19.60429 -18.19037 -17.95006 -17.69387 -17.07266 -16.71339 -16.31079 -15.71956 -15.53628 -15.40423 -15.06993 -14.69992 -14.50106 -14.34719 -14.06117 -13.79752 -13.63779 -13.46322 -13.25019 -13.06815 -12.43670 -12.32445 -12.22448 -11.80991 -11.68941 -11.64980 -11.12845 -11.12361 -10.53378 -10.52784 -10.34033 -9.89122 -9.65375 -9.62621 -9.43642 -8.87005 -8.67191 -8.13089 -6.53796 -3.96133 0.12071 0.67769 2.15338 2.66978 2.81920 3.08598 3.11893 3.20068 3.21798 3.25038 3.35549 3.70793 3.73427 4.08961 4.17687 4.34582 4.42711 4.65781 4.69393 4.82084 4.84227 4.94344 5.02094 5.12517 5.14762 5.32764 5.36324 5.62823 5.68265 5.79087 5.87294 5.92949 6.03557 6.17690 6.46478 6.59614 7.19907 7.43374 7.69698 7.88823 8.33756 8.42462 9.01679 9.36217 9.83820 10.62887 Molecular weight = 318.11amu Principal moments of inertia in cm(-1) A = 0.029699 B = 0.002164 C = 0.002085 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 942.554945 B =12935.139808 C =13428.074317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.026 3.974 3 Si 0.935 3.065 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.272 1.272 7 C -0.307 4.307 8 H 0.105 0.895 9 N -0.548 5.548 10 C 0.427 3.573 11 O -0.599 6.599 12 C 0.109 3.891 13 N -0.706 5.706 14 C 0.511 3.489 15 O -0.536 6.536 16 C -0.144 4.144 17 C 0.138 3.862 18 H 0.134 0.866 19 O -0.293 6.293 20 C 0.516 3.484 21 O -0.453 6.453 22 C -0.191 4.191 23 C -0.037 4.037 24 C -0.126 4.126 25 C -0.080 4.080 26 C -0.095 4.095 27 C -0.094 4.094 28 H 0.275 0.725 29 H 0.396 0.604 30 H 0.085 0.915 31 H 0.085 0.915 32 H 0.411 0.589 33 H 0.107 0.893 34 H 0.121 0.879 35 H 0.137 0.863 36 H 0.137 0.863 37 H 0.138 0.862 38 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.222 -24.228 -3.896 25.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.177 4.177 3 Si 0.761 3.239 4 H -0.198 1.198 5 H -0.208 1.208 6 H -0.198 1.198 7 C -0.436 4.436 8 H 0.123 0.877 9 N -0.182 5.182 10 C 0.213 3.787 11 O -0.486 6.486 12 C -0.019 4.019 13 N -0.360 5.360 14 C 0.296 3.704 15 O -0.413 6.413 16 C -0.184 4.184 17 C 0.082 3.918 18 H 0.152 0.848 19 O -0.208 6.208 20 C 0.358 3.642 21 O -0.338 6.338 22 C -0.192 4.192 23 C -0.055 4.055 24 C -0.144 4.144 25 C -0.098 4.098 26 C -0.113 4.113 27 C -0.095 4.095 28 H 0.085 0.915 29 H 0.230 0.770 30 H 0.103 0.897 31 H 0.103 0.897 32 H 0.249 0.751 33 H 0.126 0.874 34 H 0.139 0.861 35 H 0.154 0.846 36 H 0.155 0.845 37 H 0.156 0.844 38 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 7.648 -24.188 -3.314 25.584 hybrid contribution 0.322 0.947 -0.038 1.001 sum 7.969 -23.241 -3.351 24.797 Atomic orbital electron populations 1.69606 1.06017 1.28697 1.49047 1.25341 0.95680 0.99979 0.96716 0.85861 0.78776 0.80105 0.79157 1.19764 1.20837 1.19759 1.19679 0.93427 0.81997 1.48487 0.87714 1.41799 1.09516 1.04491 1.62440 1.19732 0.88282 0.84995 0.85733 1.90488 1.13709 1.86828 1.57549 1.20970 0.91849 0.85694 1.03376 1.45669 1.11668 1.04574 1.74108 1.20182 0.89470 0.83732 0.76997 1.90748 1.16413 1.84646 1.49518 1.21947 0.98612 0.91233 1.06642 1.21728 0.92384 0.91751 0.85902 0.84841 1.87484 1.58113 1.41971 1.33222 1.20612 0.79928 0.79351 0.84351 1.90880 1.59853 1.63931 1.19186 1.20975 1.01511 0.99233 0.97520 1.20919 0.92291 0.93398 0.98882 1.21243 0.98535 1.00611 0.94006 1.21464 0.97620 0.93487 0.97215 1.20369 0.94898 0.97392 0.98659 1.20827 0.97019 0.96263 0.95391 0.91484 0.76994 0.89738 0.89728 0.75084 0.87446 0.86127 0.84563 0.84546 0.84439 0.84377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.71 13.05 55.50 0.72 -22.99 16 2 C 0.03 0.67 5.50 -17.46 -0.10 0.58 16 3 Si 0.93 20.36 29.55 -169.99 -5.02 15.33 16 4 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 5 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 6 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 7 C -0.31 -8.24 9.68 -14.93 -0.14 -8.38 16 8 H 0.11 2.92 7.16 -52.49 -0.38 2.54 16 9 N -0.55 -13.43 5.29 -10.96 -0.06 -13.48 16 10 C 0.43 9.57 7.85 -10.98 -0.09 9.49 16 11 O -0.60 -14.92 15.24 5.55 0.08 -14.84 16 12 C 0.11 1.94 6.15 -5.19 -0.03 1.91 16 13 N -0.71 -10.89 5.53 -61.47 -0.34 -11.23 16 14 C 0.51 7.27 7.74 -10.99 -0.08 7.19 16 15 O -0.54 -9.49 15.53 -5.09 -0.08 -9.56 16 16 C -0.14 -1.36 5.45 -27.88 -0.15 -1.51 16 17 C 0.14 1.39 3.14 -27.83 -0.09 1.30 16 18 H 0.13 1.24 7.95 -51.93 -0.41 0.83 16 19 O -0.29 -4.13 10.23 -43.76 -0.45 -4.58 16 20 C 0.52 7.01 8.58 34.47 0.30 7.31 16 21 O -0.45 -7.47 18.04 -18.92 -0.34 -7.81 16 22 C -0.19 -1.90 6.27 -105.07 -0.66 -2.56 16 23 C -0.04 -0.28 10.10 -39.18 -0.40 -0.67 16 24 C -0.13 -0.65 10.02 -39.63 -0.40 -1.05 16 25 C -0.08 -0.37 10.05 -39.43 -0.40 -0.76 16 26 C -0.10 -0.53 10.03 -39.75 -0.40 -0.93 16 27 C -0.09 -0.77 5.68 -104.26 -0.59 -1.37 16 28 H 0.28 6.92 8.31 -40.82 -0.34 6.58 16 29 H 0.40 9.36 7.90 -40.82 -0.32 9.03 16 30 H 0.08 1.43 8.14 -51.93 -0.42 1.01 16 31 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 32 H 0.41 6.09 7.44 -40.82 -0.30 5.78 16 33 H 0.11 0.94 8.14 -51.93 -0.42 0.52 16 34 H 0.12 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.14 0.89 8.06 -52.48 -0.42 0.47 16 36 H 0.14 0.36 8.06 -52.48 -0.42 -0.06 16 37 H 0.14 0.27 8.06 -52.48 -0.42 -0.16 16 38 H 0.14 0.44 8.06 -52.48 -0.42 0.02 16 LS Contribution 343.59 15.07 5.18 5.18 Total: -1.00 -34.67 343.59 -7.46 -42.13 By element: Atomic # 1 Polarization: 15.25 SS G_CDS: -3.93 Total: 11.32 kcal Atomic # 6 Polarization: 13.76 SS G_CDS: -3.23 Total: 10.54 kcal Atomic # 7 Polarization: -48.04 SS G_CDS: 0.33 Total: -47.71 kcal Atomic # 8 Polarization: -36.01 SS G_CDS: -0.78 Total: -36.79 kcal Atomic # 14 Polarization: 20.36 SS G_CDS: -5.02 Total: 15.33 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -34.67 -7.46 -42.13 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261144646.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.607 kcal (2) G-P(sol) polarization free energy of solvation -34.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.133 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.740 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds