Wall clock time and date at job start Tue Mar 31 2020 12:49:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86794 * 120.00041 * 2 1 4 4 H 1.48496 * 109.47166 * 240.00064 * 3 2 1 5 5 H 1.48499 * 109.47206 * 0.02562 * 3 2 1 6 6 H 1.48507 * 109.47092 * 120.00363 * 3 2 1 7 7 C 1.38959 * 119.99990 * 180.02562 * 2 1 3 8 8 H 1.07991 * 119.99945 * 179.97438 * 7 2 1 9 9 N 1.37101 * 119.99493 * 359.97438 * 7 2 1 10 10 C 1.34781 * 119.99183 * 179.97438 * 9 7 2 11 11 O 1.21284 * 120.00319 * 0.02562 * 10 9 7 12 12 C 1.50706 * 119.99416 * 179.97438 * 10 9 7 13 13 N 1.46506 * 109.46759 * 179.97438 * 12 10 9 14 14 C 1.34772 * 119.99373 * 179.97438 * 13 12 10 15 15 O 1.21276 * 120.00726 * 0.02562 * 14 13 12 16 16 C 1.50703 * 119.99485 * 180.02562 * 14 13 12 17 17 C 1.53001 * 109.47246 * 180.02562 * 16 14 13 18 18 H 1.09002 * 110.05099 * 54.29619 * 17 16 14 19 19 O 1.45392 * 110.06614 * 292.81884 * 17 16 14 20 20 C 1.34344 * 109.01010 * 240.70858 * 19 17 16 21 21 O 1.21468 * 124.90024 * 180.02562 * 20 19 17 22 22 C 1.47423 * 110.20939 * 359.97438 * 20 19 17 23 23 C 1.39620 * 132.55116 * 179.97438 * 22 20 19 24 24 C 1.37938 * 119.80168 * 180.02562 * 23 22 20 25 25 C 1.38399 * 120.31937 * 359.97438 * 24 23 22 26 26 C 1.38484 * 120.21580 * 0.02562 * 25 24 23 27 27 C 1.37539 * 119.95212 * 359.97438 * 26 25 24 28 28 H 0.96998 * 119.99992 * 359.97438 * 1 2 3 29 29 H 0.96998 * 120.00568 * 359.97438 * 9 7 2 30 30 H 1.08994 * 109.47219 * 60.00176 * 12 10 9 31 31 H 1.09002 * 109.47241 * 300.00006 * 12 10 9 32 32 H 0.96999 * 120.00084 * 0.02562 * 13 12 10 33 33 H 1.09004 * 109.47227 * 60.00175 * 16 14 13 34 34 H 1.09002 * 109.47059 * 300.00158 * 16 14 13 35 35 H 1.08007 * 120.09653 * 0.04368 * 23 22 20 36 36 H 1.08003 * 119.84657 * 179.97438 * 24 23 22 37 37 H 1.08004 * 119.89226 * 179.97438 * 25 24 23 38 38 H 1.08007 * 120.02652 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.1018 1.6964 -1.2125 5 1 1.2832 2.7464 0.0006 6 1 3.1020 1.6963 1.2125 7 6 2.0089 -1.2034 -0.0005 8 1 3.0888 -1.2034 -0.0010 9 7 1.3233 -2.3907 -0.0005 10 6 1.9973 -3.5579 -0.0016 11 8 3.2101 -3.5579 -0.0021 12 6 1.2437 -4.8630 -0.0010 13 7 2.1957 -5.9766 -0.0030 14 6 1.7464 -7.2472 -0.0023 15 8 0.5541 -7.4688 -0.0006 16 6 2.7257 -8.3926 -0.0038 17 6 1.9607 -9.7177 -0.0033 18 1 1.2554 -9.7423 -0.8340 19 8 1.2540 -9.8852 1.2562 20 6 1.7056 -10.9931 1.8673 21 8 1.3114 -11.4049 2.9399 22 6 2.7479 -11.6379 1.0479 23 6 3.5164 -12.7888 1.2323 24 6 4.4380 -13.1584 0.2748 25 6 4.6037 -12.3944 -0.8672 26 6 3.8451 -11.2515 -1.0572 27 6 2.9233 -10.8737 -0.1090 28 1 -0.4850 0.8400 0.0004 29 1 0.3533 -2.3907 0.0002 30 1 0.6160 -4.9205 -0.8902 31 1 0.6180 -4.9209 0.8897 32 1 3.1494 -5.7993 -0.0040 33 1 3.3537 -8.3349 0.8853 34 1 3.3511 -8.3349 -0.8947 35 1 3.3895 -13.3880 2.1219 36 1 5.0332 -14.0484 0.4170 37 1 5.3276 -12.6900 -1.6122 38 1 3.9772 -10.6573 -1.9494 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001261144646.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:49:52 Heat of formation + Delta-G solvation = -143.346138 kcal Electronic energy + Delta-G solvation = -24930.753565 eV Core-core repulsion = 20930.525789 eV Total energy + Delta-G solvation = -4000.227775 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.109 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.84054 -40.94762 -39.89506 -39.39082 -38.51302 -36.25362 -35.28747 -33.93178 -33.37301 -32.26914 -31.49782 -29.27620 -26.78228 -25.64858 -25.15609 -23.05238 -22.01622 -21.39245 -21.19102 -20.07350 -18.82325 -18.68042 -18.11696 -17.74318 -17.20284 -16.94604 -16.90412 -16.71432 -16.28486 -16.02224 -15.68472 -15.51302 -15.20617 -14.90182 -14.78167 -14.35233 -14.04283 -13.87037 -13.80286 -13.69548 -13.54038 -12.98570 -12.86860 -12.80376 -12.47381 -12.24236 -12.14089 -12.02581 -11.56168 -11.44175 -11.07436 -10.56349 -10.20860 -10.13978 -10.08745 -9.96407 -8.51200 -6.01684 -0.51006 0.21900 1.34506 1.37984 1.42762 1.53749 1.57376 1.90669 1.93040 1.99112 2.30920 2.65482 2.66135 2.95648 3.14026 3.15968 3.43434 3.74071 3.84790 4.05341 4.11935 4.23053 4.29183 4.33499 4.42596 4.44873 4.50260 4.58311 4.64050 4.92595 5.10122 5.26782 5.28723 5.37919 5.38236 5.58369 5.81011 5.91191 6.22808 6.44750 6.52439 7.02800 7.16313 7.44072 7.93485 8.65406 Molecular weight = 318.11amu Principal moments of inertia in cm(-1) A = 0.029699 B = 0.002164 C = 0.002085 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 942.554945 B =12935.139808 C =13428.074317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.012 4.012 3 Si 0.998 3.002 4 H -0.268 1.268 5 H -0.273 1.273 6 H -0.270 1.270 7 C -0.337 4.337 8 H 0.088 0.912 9 N -0.561 5.561 10 C 0.433 3.567 11 O -0.623 6.623 12 C 0.120 3.880 13 N -0.707 5.707 14 C 0.511 3.489 15 O -0.574 6.574 16 C -0.133 4.133 17 C 0.133 3.867 18 H 0.137 0.863 19 O -0.327 6.327 20 C 0.509 3.491 21 O -0.504 6.504 22 C -0.220 4.220 23 C -0.047 4.047 24 C -0.120 4.120 25 C -0.065 4.065 26 C -0.091 4.091 27 C -0.091 4.091 28 H 0.280 0.720 29 H 0.398 0.602 30 H 0.097 0.903 31 H 0.087 0.913 32 H 0.416 0.584 33 H 0.117 0.883 34 H 0.166 0.834 35 H 0.136 0.864 36 H 0.167 0.833 37 H 0.176 0.824 38 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.705 -25.345 -5.938 28.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.213 4.213 3 Si 0.821 3.179 4 H -0.193 1.193 5 H -0.198 1.198 6 H -0.195 1.195 7 C -0.467 4.467 8 H 0.106 0.894 9 N -0.196 5.196 10 C 0.220 3.780 11 O -0.511 6.511 12 C -0.008 4.008 13 N -0.361 5.361 14 C 0.298 3.702 15 O -0.453 6.453 16 C -0.172 4.172 17 C 0.078 3.922 18 H 0.155 0.845 19 O -0.242 6.242 20 C 0.354 3.646 21 O -0.394 6.394 22 C -0.222 4.222 23 C -0.065 4.065 24 C -0.138 4.138 25 C -0.083 4.083 26 C -0.108 4.108 27 C -0.092 4.092 28 H 0.089 0.911 29 H 0.232 0.768 30 H 0.115 0.885 31 H 0.105 0.895 32 H 0.255 0.745 33 H 0.135 0.865 34 H 0.184 0.816 35 H 0.154 0.846 36 H 0.184 0.816 37 H 0.193 0.807 38 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges 10.144 -25.322 -5.378 27.803 hybrid contribution -0.403 1.187 0.535 1.363 sum 9.741 -24.134 -4.843 26.473 Atomic orbital electron populations 1.69679 1.07055 1.29704 1.49246 1.26160 0.96546 1.02788 0.95797 0.84914 0.77694 0.76154 0.79152 1.19266 1.19768 1.19546 1.19710 0.92995 0.83514 1.50447 0.89423 1.41872 1.09604 1.04715 1.63437 1.20422 0.88145 0.85888 0.83521 1.90463 1.15035 1.87538 1.58021 1.20757 0.91839 0.84097 1.04074 1.45693 1.11414 1.04464 1.74531 1.20996 0.89810 0.84035 0.75328 1.90738 1.18447 1.85085 1.51053 1.22019 0.97534 0.88434 1.09208 1.21922 0.92990 0.92908 0.84384 0.84516 1.87421 1.59398 1.42484 1.34944 1.21222 0.80185 0.79179 0.84007 1.90819 1.61860 1.65267 1.21424 1.20773 1.02188 1.01183 0.98007 1.21135 0.92702 0.92736 0.99908 1.21630 0.97444 1.01440 0.93288 1.21983 0.96949 0.92122 0.97201 1.20805 0.93463 0.97893 0.98661 1.20728 0.97612 0.95200 0.95655 0.91086 0.76771 0.88532 0.89488 0.74514 0.86486 0.81614 0.84618 0.81583 0.80669 0.81225 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.72 13.05 21.67 0.28 -48.44 16 2 C -0.01 -0.64 5.50 84.93 0.47 -0.17 16 3 Si 1.00 41.43 29.55 68.60 2.03 43.46 16 4 H -0.27 -10.85 7.11 99.48 0.71 -10.14 16 5 H -0.27 -10.80 7.11 99.48 0.71 -10.10 16 6 H -0.27 -11.07 7.11 99.48 0.71 -10.37 16 7 C -0.34 -18.41 9.68 84.04 0.81 -17.60 16 8 H 0.09 4.99 7.16 -2.92 -0.02 4.97 16 9 N -0.56 -27.94 5.29 -306.98 -1.62 -29.56 16 10 C 0.43 19.54 7.85 87.66 0.69 20.23 16 11 O -0.62 -31.11 15.24 -3.04 -0.05 -31.16 16 12 C 0.12 4.27 6.15 85.63 0.53 4.80 16 13 N -0.71 -21.14 5.53 -466.78 -2.58 -23.72 16 14 C 0.51 14.06 7.74 87.66 0.68 14.73 16 15 O -0.57 -20.36 15.53 7.17 0.11 -20.25 16 16 C -0.13 -2.23 5.45 29.85 0.16 -2.06 16 17 C 0.13 2.56 3.14 29.88 0.09 2.66 16 18 H 0.14 2.45 7.95 -2.39 -0.02 2.43 16 19 O -0.33 -9.69 10.23 -48.51 -0.50 -10.19 16 20 C 0.51 14.81 8.58 70.24 0.60 15.41 16 21 O -0.50 -18.18 18.04 19.63 0.35 -17.83 16 22 C -0.22 -4.33 6.27 -20.16 -0.13 -4.46 16 23 C -0.05 -0.65 10.10 22.53 0.23 -0.42 16 24 C -0.12 -0.79 10.02 22.24 0.22 -0.57 16 25 C -0.07 -0.26 10.05 22.37 0.22 -0.03 16 26 C -0.09 -0.60 10.03 22.16 0.22 -0.38 16 27 C -0.09 -1.31 5.68 -19.63 -0.11 -1.42 16 28 H 0.28 13.95 8.31 -92.71 -0.77 13.18 16 29 H 0.40 19.19 7.90 -92.71 -0.73 18.46 16 30 H 0.10 3.22 8.14 -2.39 -0.02 3.21 16 31 H 0.09 3.08 8.14 -2.39 -0.02 3.06 16 32 H 0.42 11.78 7.44 -92.71 -0.69 11.09 16 33 H 0.12 1.82 8.14 -2.38 -0.02 1.80 16 34 H 0.17 1.27 8.14 -2.39 -0.02 1.25 16 35 H 0.14 1.78 8.06 -2.91 -0.02 1.75 16 36 H 0.17 0.10 8.06 -2.91 -0.02 0.08 16 37 H 0.18 -0.53 8.06 -2.91 -0.02 -0.55 16 38 H 0.17 0.07 8.06 -2.91 -0.02 0.05 16 Total: -1.00 -79.24 343.59 2.44 -76.80 By element: Atomic # 1 Polarization: 30.45 SS G_CDS: -0.28 Total: 30.17 kcal Atomic # 6 Polarization: 26.02 SS G_CDS: 4.69 Total: 30.72 kcal Atomic # 7 Polarization: -97.80 SS G_CDS: -3.92 Total: -101.72 kcal Atomic # 8 Polarization: -79.35 SS G_CDS: -0.08 Total: -79.43 kcal Atomic # 14 Polarization: 41.43 SS G_CDS: 2.03 Total: 43.46 kcal Total: -79.24 2.44 -76.80 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261144646.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.543 kcal (2) G-P(sol) polarization free energy of solvation -79.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.803 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds