Wall clock time and date at job start Tue Mar 31 2020 12:32:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35899 * 117.00146 * 2 1 4 4 C 1.38729 * 120.04796 * 0.02562 * 3 2 1 5 5 C 1.38236 * 119.92986 * 179.97438 * 4 3 2 6 6 Cl 1.73596 * 119.98600 * 179.97438 * 5 4 3 7 7 C 1.38405 * 120.02984 * 359.97438 * 5 4 3 8 8 C 1.38230 * 120.09700 * 359.75023 * 7 5 4 9 9 C 1.38163 * 120.06766 * 0.50393 * 8 7 5 10 10 C 1.50706 * 120.01729 * 179.77099 * 9 8 7 11 11 N 1.46500 * 109.47038 * 259.72688 * 10 9 8 12 12 C 1.38818 * 120.00015 * 179.97438 * 11 10 9 13 13 C 1.39802 * 119.58332 * 359.73095 * 12 11 10 14 14 C 1.38592 * 119.48848 * 179.79260 * 13 12 11 15 15 C 1.38388 * 118.68254 * 0.46567 * 14 13 12 16 16 C 1.40553 * 119.15035 * 359.75782 * 15 14 13 17 17 C 1.41315 * 119.78763 * 179.97438 * 16 15 14 18 18 H 1.08004 * 119.99931 * 0.02562 * 17 16 15 19 19 C 1.40020 * 120.00309 * 180.02562 * 17 16 15 20 20 N 1.30746 * 120.00031 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 120.00117 * 179.97438 * 19 17 16 22 22 H 1.48499 * 109.47059 * 60.00192 * 21 19 17 23 23 H 1.48502 * 109.47120 * 179.97438 * 21 19 17 24 24 H 1.48497 * 109.47141 * 299.99615 * 21 19 17 25 25 N 1.31956 * 119.58453 * 179.97438 * 12 11 10 26 26 H 1.09001 * 109.46998 * 300.00734 * 1 2 3 27 27 H 1.09007 * 109.46796 * 60.00202 * 1 2 3 28 28 H 1.08999 * 109.47146 * 180.02562 * 1 2 3 29 29 H 1.07994 * 120.03490 * 359.96014 * 4 3 2 30 30 H 1.08003 * 119.95392 * 180.02562 * 7 5 4 31 31 H 1.08002 * 119.96772 * 180.25633 * 8 7 5 32 32 H 1.09000 * 109.46628 * 19.72385 * 10 9 8 33 33 H 1.08997 * 109.47222 * 139.72233 * 10 9 8 34 34 H 0.97000 * 120.00189 * 359.97438 * 11 10 9 35 35 H 1.08000 * 120.25657 * 359.97438 * 13 12 11 36 36 H 1.08008 * 120.66118 * 180.22600 * 14 13 12 37 37 H 1.08000 * 120.42821 * 179.77366 * 15 14 13 38 38 H 0.96994 * 120.00289 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2914 2.3750 0.0005 5 6 1.9216 3.6054 0.0011 6 17 0.9788 5.0630 0.0011 7 6 3.3039 3.6756 0.0016 8 6 4.0569 2.5164 0.0068 9 6 3.4313 1.2846 0.0010 10 6 4.2534 0.0215 0.0015 11 7 4.3193 -0.5188 -1.3587 12 6 5.0274 -1.6864 -1.6082 13 6 5.6791 -2.3365 -0.5560 14 6 6.3819 -3.5045 -0.8065 15 6 6.4249 -3.9889 -2.1022 16 6 5.7532 -3.2872 -3.1180 17 6 5.7886 -3.7695 -4.4459 18 1 6.3303 -4.6747 -4.6773 19 6 5.1215 -3.0738 -5.4615 20 7 4.4653 -1.9782 -5.1813 21 14 5.1690 -3.7109 -7.2169 22 1 4.5769 -5.0718 -7.2657 23 1 4.3903 -2.8011 -8.0950 24 1 6.5771 -3.7665 -7.6853 25 7 5.0810 -2.1660 -2.8363 26 1 -0.3633 0.5140 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3633 -1.0276 0.0005 29 1 0.2129 2.3200 0.0003 30 1 3.7949 4.6376 0.0024 31 1 5.1353 2.5737 0.0114 32 1 5.2608 0.2439 0.3533 33 1 3.7916 -0.7124 0.6620 34 1 3.8681 -0.0606 -2.0849 35 1 5.6328 -1.9334 0.4449 36 1 6.8893 -4.0242 -0.0072 37 1 6.9674 -4.8946 -2.3298 38 1 4.0029 -1.4964 -5.8847 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001320656282.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:32:32 Heat of formation + Delta-G solvation = 21.883372 kcal Electronic energy + Delta-G solvation = -23196.566063 eV Core-core repulsion = 19644.212341 eV Total energy + Delta-G solvation = -3552.353721 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.088 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.45952 -38.17892 -37.77466 -36.63320 -35.04064 -33.28790 -31.48145 -30.44203 -30.21067 -28.62327 -27.43900 -25.39652 -25.16630 -22.49870 -21.84905 -21.24068 -20.25552 -18.30654 -17.30275 -16.69046 -16.50684 -15.88019 -15.65394 -15.03113 -14.70853 -14.60674 -14.22471 -14.10114 -13.53623 -13.44984 -13.32103 -13.09883 -12.73608 -12.19284 -12.10327 -11.97020 -11.78820 -11.62559 -11.17488 -11.11537 -11.05151 -10.96752 -10.94489 -10.56787 -10.39648 -9.89784 -9.43271 -9.02607 -8.82249 -8.33880 -7.84693 -7.44241 -6.43339 -6.26838 -4.41960 0.90123 1.17761 1.87496 2.93911 3.13166 3.15014 3.15931 3.30133 3.35718 3.38173 4.02313 4.45843 4.55945 4.69734 4.85656 4.90400 4.91390 5.03685 5.09296 5.36150 5.41226 5.47724 5.67476 5.90652 5.99124 6.06371 6.12843 6.20989 6.37105 6.48698 6.63619 6.92029 6.95091 6.99813 7.20071 7.30887 7.65829 7.87396 7.98018 8.22198 8.42754 8.75526 8.86250 9.18625 10.31005 10.46586 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.014961 B = 0.003204 C = 0.002944 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1871.064566 B = 8738.267957 C = 9507.373585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.295 6.295 3 C 0.161 3.839 4 C -0.208 4.208 5 C 0.007 3.993 6 Cl -0.073 7.073 7 C -0.152 4.152 8 C -0.050 4.050 9 C -0.123 4.123 10 C 0.191 3.809 11 N -0.730 5.730 12 C 0.415 3.585 13 C -0.367 4.367 14 C -0.032 4.032 15 C -0.318 4.318 16 C 0.294 3.706 17 C -0.436 4.436 18 H 0.082 0.918 19 C 0.072 3.928 20 N -0.716 5.716 21 Si 0.904 3.096 22 H -0.266 1.266 23 H -0.279 1.279 24 H -0.266 1.266 25 N -0.532 5.532 26 H 0.054 0.946 27 H 0.057 0.943 28 H 0.103 0.897 29 H 0.138 0.862 30 H 0.135 0.865 31 H 0.142 0.858 32 H 0.060 0.940 33 H 0.064 0.936 34 H 0.395 0.605 35 H 0.090 0.910 36 H 0.092 0.908 37 H 0.094 0.906 38 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.752 11.337 9.738 16.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.207 6.207 3 C 0.114 3.886 4 C -0.227 4.227 5 C -0.020 4.020 6 Cl -0.044 7.044 7 C -0.171 4.171 8 C -0.069 4.069 9 C -0.124 4.124 10 C 0.066 3.934 11 N -0.367 5.367 12 C 0.175 3.825 13 C -0.393 4.393 14 C -0.056 4.056 15 C -0.341 4.341 16 C 0.166 3.834 17 C -0.468 4.468 18 H 0.100 0.900 19 C -0.153 4.153 20 N -0.338 5.338 21 Si 0.728 3.272 22 H -0.191 1.191 23 H -0.204 1.204 24 H -0.190 1.190 25 N -0.253 5.253 26 H 0.073 0.927 27 H 0.075 0.925 28 H 0.121 0.879 29 H 0.156 0.844 30 H 0.153 0.847 31 H 0.160 0.840 32 H 0.078 0.922 33 H 0.082 0.918 34 H 0.230 0.770 35 H 0.108 0.892 36 H 0.110 0.890 37 H 0.112 0.888 38 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -8.272 11.849 9.174 17.117 hybrid contribution -0.180 -0.195 -0.328 0.422 sum -8.453 11.654 8.846 16.897 Atomic orbital electron populations 1.23129 0.78310 1.04427 1.01158 1.86265 1.21312 1.25524 1.87628 1.18735 0.91625 0.84128 0.94145 1.21039 1.00671 0.90601 1.10404 1.20620 0.91868 0.86906 1.02566 1.98367 1.72940 1.36264 1.96828 1.20933 0.91371 0.99598 1.05191 1.20943 1.00422 0.90078 0.95441 1.19539 0.90693 0.96393 1.05823 1.19745 0.97148 0.90315 0.86196 1.44060 1.58855 1.26506 1.07270 1.18491 0.87860 0.85558 0.90627 1.20598 1.17148 1.04000 0.97541 1.20586 0.95326 0.94219 0.95494 1.21522 1.13549 1.04994 0.94076 1.18184 0.86156 0.86386 0.92632 1.19531 1.27710 1.08494 0.91070 0.90014 1.26033 0.94133 0.94370 1.00752 1.70148 1.19192 1.11192 1.33224 0.86461 0.79261 0.79619 0.81826 1.19058 1.20408 1.19034 1.68209 1.25709 1.15682 1.15721 0.92719 0.92452 0.87862 0.84427 0.84735 0.84014 0.92171 0.91789 0.77030 0.89233 0.89012 0.88802 0.91974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.24 9.81 101.05 0.99 1.23 16 2 O -0.30 -4.18 9.73 -19.42 -0.19 -4.36 16 3 C 0.16 2.17 6.66 -39.22 -0.26 1.91 16 4 C -0.21 -2.42 8.82 -39.40 -0.35 -2.77 16 5 C 0.01 0.08 6.32 -39.52 -0.25 -0.17 16 6 Cl -0.07 -0.74 28.95 -51.86 -1.50 -2.24 16 7 C -0.15 -1.65 9.83 -39.52 -0.39 -2.04 16 8 C -0.05 -0.59 9.66 -39.61 -0.38 -0.97 16 9 C -0.12 -1.71 5.26 -104.47 -0.55 -2.26 16 10 C 0.19 3.10 4.67 -5.19 -0.02 3.08 16 11 N -0.73 -15.05 5.71 -61.57 -0.35 -15.41 16 12 C 0.41 10.30 7.65 -155.33 -1.19 9.11 16 13 C -0.37 -8.58 9.34 -38.87 -0.36 -8.95 16 14 C -0.03 -0.75 10.15 -39.40 -0.40 -1.15 16 15 C -0.32 -8.20 9.83 -38.65 -0.38 -8.58 16 16 C 0.29 8.31 6.55 -85.00 -0.56 7.75 16 17 C -0.44 -11.99 9.14 -37.75 -0.34 -12.34 16 18 H 0.08 2.10 7.85 -52.48 -0.41 1.69 16 19 C 0.07 1.87 5.50 -17.35 -0.10 1.78 16 20 N -0.72 -19.34 11.46 55.55 0.64 -18.71 16 21 Si 0.90 18.99 29.56 -169.99 -5.02 13.96 16 22 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 23 H -0.28 -5.72 7.11 56.52 0.40 -5.31 16 24 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 25 N -0.53 -14.95 7.89 -10.33 -0.08 -15.03 16 26 H 0.05 0.42 7.66 -51.93 -0.40 0.03 16 27 H 0.06 0.51 7.66 -51.92 -0.40 0.12 16 28 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 29 H 0.14 1.35 6.30 -52.49 -0.33 1.02 16 30 H 0.13 1.19 8.06 -52.48 -0.42 0.77 16 31 H 0.14 1.43 8.03 -52.49 -0.42 1.00 16 32 H 0.06 0.92 7.77 -51.93 -0.40 0.52 16 33 H 0.06 1.08 7.64 -51.93 -0.40 0.68 16 34 H 0.40 8.41 8.58 -40.82 -0.35 8.06 16 35 H 0.09 1.86 6.68 -52.49 -0.35 1.51 16 36 H 0.09 1.85 8.06 -52.48 -0.42 1.43 16 37 H 0.09 2.25 8.06 -52.49 -0.42 1.82 16 38 H 0.27 6.64 8.29 -40.82 -0.34 6.31 16 LS Contribution 342.59 15.07 5.16 5.16 Total: -1.00 -30.90 342.59 -10.18 -41.08 By element: Atomic # 1 Polarization: 14.17 SS G_CDS: -4.29 Total: 9.89 kcal Atomic # 6 Polarization: -9.81 SS G_CDS: -4.54 Total: -14.35 kcal Atomic # 7 Polarization: -49.35 SS G_CDS: 0.20 Total: -49.14 kcal Atomic # 8 Polarization: -4.18 SS G_CDS: -0.19 Total: -4.36 kcal Atomic # 14 Polarization: 18.99 SS G_CDS: -5.02 Total: 13.96 kcal Atomic # 17 Polarization: -0.74 SS G_CDS: -1.50 Total: -2.24 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -30.90 -10.18 -41.08 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320656282.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.963 kcal (2) G-P(sol) polarization free energy of solvation -30.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.079 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds