Wall clock time and date at job start Tue Mar 31 2020 12:32:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35899 * 117.00146 * 2 1 4 4 C 1.38729 * 120.04796 * 0.02562 * 3 2 1 5 5 C 1.38236 * 119.92986 * 179.97438 * 4 3 2 6 6 Cl 1.73596 * 119.98600 * 179.97438 * 5 4 3 7 7 C 1.38405 * 120.02984 * 359.97438 * 5 4 3 8 8 C 1.38230 * 120.09700 * 359.75023 * 7 5 4 9 9 C 1.38163 * 120.06766 * 0.50393 * 8 7 5 10 10 C 1.50706 * 120.01729 * 179.77099 * 9 8 7 11 11 N 1.46500 * 109.47038 * 259.72688 * 10 9 8 12 12 C 1.38818 * 120.00015 * 179.97438 * 11 10 9 13 13 C 1.39802 * 119.58332 * 359.73095 * 12 11 10 14 14 C 1.38592 * 119.48848 * 179.79260 * 13 12 11 15 15 C 1.38388 * 118.68254 * 0.46567 * 14 13 12 16 16 C 1.40553 * 119.15035 * 359.75782 * 15 14 13 17 17 C 1.41315 * 119.78763 * 179.97438 * 16 15 14 18 18 H 1.08004 * 119.99931 * 0.02562 * 17 16 15 19 19 C 1.40020 * 120.00309 * 180.02562 * 17 16 15 20 20 N 1.30746 * 120.00031 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 120.00117 * 179.97438 * 19 17 16 22 22 H 1.48499 * 109.47059 * 60.00192 * 21 19 17 23 23 H 1.48502 * 109.47120 * 179.97438 * 21 19 17 24 24 H 1.48497 * 109.47141 * 299.99615 * 21 19 17 25 25 N 1.31956 * 119.58453 * 179.97438 * 12 11 10 26 26 H 1.09001 * 109.46998 * 300.00734 * 1 2 3 27 27 H 1.09007 * 109.46796 * 60.00202 * 1 2 3 28 28 H 1.08999 * 109.47146 * 180.02562 * 1 2 3 29 29 H 1.07994 * 120.03490 * 359.96014 * 4 3 2 30 30 H 1.08003 * 119.95392 * 180.02562 * 7 5 4 31 31 H 1.08002 * 119.96772 * 180.25633 * 8 7 5 32 32 H 1.09000 * 109.46628 * 19.72385 * 10 9 8 33 33 H 1.08997 * 109.47222 * 139.72233 * 10 9 8 34 34 H 0.97000 * 120.00189 * 359.97438 * 11 10 9 35 35 H 1.08000 * 120.25657 * 359.97438 * 13 12 11 36 36 H 1.08008 * 120.66118 * 180.22600 * 14 13 12 37 37 H 1.08000 * 120.42821 * 179.77366 * 15 14 13 38 38 H 0.96994 * 120.00289 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2914 2.3750 0.0005 5 6 1.9216 3.6054 0.0011 6 17 0.9788 5.0630 0.0011 7 6 3.3039 3.6756 0.0016 8 6 4.0569 2.5164 0.0068 9 6 3.4313 1.2846 0.0010 10 6 4.2534 0.0215 0.0015 11 7 4.3193 -0.5188 -1.3587 12 6 5.0274 -1.6864 -1.6082 13 6 5.6791 -2.3365 -0.5560 14 6 6.3819 -3.5045 -0.8065 15 6 6.4249 -3.9889 -2.1022 16 6 5.7532 -3.2872 -3.1180 17 6 5.7886 -3.7695 -4.4459 18 1 6.3303 -4.6747 -4.6773 19 6 5.1215 -3.0738 -5.4615 20 7 4.4653 -1.9782 -5.1813 21 14 5.1690 -3.7109 -7.2169 22 1 4.5769 -5.0718 -7.2657 23 1 4.3903 -2.8011 -8.0950 24 1 6.5771 -3.7665 -7.6853 25 7 5.0810 -2.1660 -2.8363 26 1 -0.3633 0.5140 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3633 -1.0276 0.0005 29 1 0.2129 2.3200 0.0003 30 1 3.7949 4.6376 0.0024 31 1 5.1353 2.5737 0.0114 32 1 5.2608 0.2439 0.3533 33 1 3.7916 -0.7124 0.6620 34 1 3.8681 -0.0606 -2.0849 35 1 5.6328 -1.9334 0.4449 36 1 6.8893 -4.0242 -0.0072 37 1 6.9674 -4.8946 -2.3298 38 1 4.0029 -1.4964 -5.8847 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001320656282.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:32:32 Heat of formation + Delta-G solvation = 4.837334 kcal Electronic energy + Delta-G solvation = -23197.305234 eV Core-core repulsion = 19644.212341 eV Total energy + Delta-G solvation = -3553.092893 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.088 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.42442 -40.02553 -38.71446 -37.58804 -36.56517 -35.12886 -32.84861 -32.10111 -31.34504 -30.29571 -28.30940 -27.25705 -26.54827 -23.48208 -23.35057 -22.74949 -21.96849 -19.34621 -19.13394 -18.14074 -17.61281 -16.93039 -16.77235 -16.47199 -16.38562 -15.96542 -15.68326 -15.22842 -15.01226 -14.75926 -14.67565 -14.30950 -14.19133 -13.69379 -13.60529 -12.97480 -12.87935 -12.83350 -12.71133 -12.66577 -12.55818 -12.20893 -12.01455 -12.00087 -11.81421 -11.72406 -11.26316 -10.63627 -9.94639 -9.80115 -9.41239 -9.28651 -8.24765 -8.19620 -6.45180 -0.05358 0.26766 1.00521 1.10214 1.38448 1.42114 1.54074 1.61116 2.26562 2.27899 2.37000 2.95320 2.97049 3.63460 3.69194 3.98698 4.02233 4.10000 4.26456 4.32722 4.38804 4.42383 4.57826 4.59731 4.67393 4.74592 4.85463 4.95497 5.03797 5.04076 5.13581 5.15697 5.35169 5.39505 5.56899 5.75055 5.99969 6.10155 6.24671 6.29713 6.58846 6.86274 6.96556 7.25295 8.38142 8.54370 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.014961 B = 0.003204 C = 0.002944 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1871.064566 B = 8738.267957 C = 9507.373585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.326 6.326 3 C 0.149 3.851 4 C -0.208 4.208 5 C 0.004 3.996 6 Cl -0.060 7.060 7 C -0.150 4.150 8 C -0.047 4.047 9 C -0.143 4.143 10 C 0.195 3.805 11 N -0.724 5.724 12 C 0.398 3.602 13 C -0.366 4.366 14 C -0.029 4.029 15 C -0.346 4.346 16 C 0.260 3.740 17 C -0.473 4.473 18 H 0.086 0.914 19 C 0.027 3.973 20 N -0.752 5.752 21 Si 0.985 3.015 22 H -0.260 1.260 23 H -0.269 1.269 24 H -0.259 1.259 25 N -0.566 5.566 26 H 0.076 0.924 27 H 0.063 0.937 28 H 0.110 0.890 29 H 0.154 0.846 30 H 0.158 0.842 31 H 0.158 0.842 32 H 0.072 0.928 33 H 0.056 0.944 34 H 0.389 0.611 35 H 0.118 0.882 36 H 0.129 0.871 37 H 0.102 0.898 38 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.068 12.473 10.181 18.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.239 6.239 3 C 0.102 3.898 4 C -0.227 4.227 5 C -0.023 4.023 6 Cl -0.031 7.031 7 C -0.168 4.168 8 C -0.066 4.066 9 C -0.145 4.145 10 C 0.071 3.929 11 N -0.358 5.358 12 C 0.157 3.843 13 C -0.392 4.392 14 C -0.054 4.054 15 C -0.369 4.369 16 C 0.133 3.867 17 C -0.505 4.505 18 H 0.104 0.896 19 C -0.195 4.195 20 N -0.374 5.374 21 Si 0.805 3.195 22 H -0.184 1.184 23 H -0.194 1.194 24 H -0.184 1.184 25 N -0.289 5.289 26 H 0.094 0.906 27 H 0.081 0.919 28 H 0.128 0.872 29 H 0.172 0.828 30 H 0.175 0.825 31 H 0.175 0.825 32 H 0.090 0.910 33 H 0.074 0.926 34 H 0.222 0.778 35 H 0.136 0.864 36 H 0.147 0.853 37 H 0.120 0.880 38 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -8.600 13.010 9.668 18.349 hybrid contribution -0.148 -0.436 -0.308 0.554 sum -8.748 12.574 9.360 17.951 Atomic orbital electron populations 1.23364 0.76478 1.05401 1.02473 1.86214 1.23443 1.26333 1.87875 1.18882 0.91752 0.84553 0.94637 1.21185 1.01477 0.90157 1.09864 1.20796 0.92357 0.87299 1.01832 1.98374 1.72657 1.35367 1.96706 1.21194 0.91277 1.00245 1.04102 1.21133 1.01343 0.89558 0.94566 1.19449 0.90850 0.95989 1.08168 1.19823 0.98233 0.91244 0.83593 1.44252 1.57529 1.25141 1.08909 1.18941 0.88269 0.86715 0.90374 1.20942 1.16058 1.03733 0.98444 1.21003 0.94620 0.94107 0.95629 1.21687 1.14574 1.05739 0.94862 1.18668 0.87027 0.87186 0.93859 1.19902 1.29227 1.09430 0.91955 0.89596 1.26944 0.93105 0.94269 1.05165 1.70258 1.19865 1.12412 1.34911 0.85238 0.79519 0.79061 0.75663 1.18435 1.19382 1.18361 1.68183 1.26834 1.16332 1.17559 0.90597 0.91860 0.87196 0.82819 0.82460 0.82454 0.90975 0.92554 0.77778 0.86414 0.85281 0.88006 0.91486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.32 9.81 113.37 1.11 1.43 16 2 O -0.33 -9.19 9.73 -92.41 -0.90 -10.09 16 3 C 0.15 3.93 6.66 22.50 0.15 4.07 16 4 C -0.21 -4.53 8.82 22.39 0.20 -4.34 16 5 C 0.00 0.09 6.32 22.31 0.14 0.23 16 6 Cl -0.06 -1.08 28.95 -2.72 -0.08 -1.16 16 7 C -0.15 -2.91 9.83 22.31 0.22 -2.69 16 8 C -0.05 -1.03 9.66 22.25 0.22 -0.82 16 9 C -0.14 -3.86 5.26 -19.76 -0.10 -3.97 16 10 C 0.19 6.23 4.67 85.64 0.40 6.63 16 11 N -0.72 -30.20 5.71 -348.71 -1.99 -32.19 16 12 C 0.40 20.03 7.65 133.42 1.02 21.05 16 13 C -0.37 -16.87 9.34 22.73 0.21 -16.66 16 14 C -0.03 -1.36 10.15 22.39 0.23 -1.13 16 15 C -0.35 -18.08 9.83 22.87 0.22 -17.85 16 16 C 0.26 15.19 6.55 40.18 0.26 15.45 16 17 C -0.47 -26.85 9.14 23.46 0.21 -26.63 16 18 H 0.09 4.57 7.85 -2.91 -0.02 4.54 16 19 C 0.03 1.42 5.50 85.29 0.47 1.88 16 20 N -0.75 -41.75 11.46 21.84 0.25 -41.50 16 21 Si 0.98 39.40 29.56 68.60 2.03 41.42 16 22 H -0.26 -10.06 7.11 99.48 0.71 -9.35 16 23 H -0.27 -10.22 7.11 99.48 0.71 -9.51 16 24 H -0.26 -10.01 7.11 99.48 0.71 -9.31 16 25 N -0.57 -32.83 7.89 -186.58 -1.47 -34.30 16 26 H 0.08 1.07 7.66 -2.39 -0.02 1.05 16 27 H 0.06 1.09 7.66 -2.38 -0.02 1.07 16 28 H 0.11 1.85 8.14 -2.39 -0.02 1.83 16 29 H 0.15 2.73 6.30 -2.91 -0.02 2.71 16 30 H 0.16 2.30 8.06 -2.91 -0.02 2.28 16 31 H 0.16 2.85 8.03 -2.91 -0.02 2.82 16 32 H 0.07 2.12 7.77 -2.39 -0.02 2.10 16 33 H 0.06 1.88 7.64 -2.39 -0.02 1.87 16 34 H 0.39 17.01 8.58 -92.71 -0.80 16.21 16 35 H 0.12 4.66 6.68 -2.91 -0.02 4.64 16 36 H 0.13 4.89 8.06 -2.91 -0.02 4.86 16 37 H 0.10 4.97 8.06 -2.91 -0.02 4.94 16 38 H 0.27 13.85 8.29 -92.71 -0.77 13.08 16 Total: -1.00 -68.41 342.59 3.11 -65.31 By element: Atomic # 1 Polarization: 35.53 SS G_CDS: 0.31 Total: 35.84 kcal Atomic # 6 Polarization: -28.29 SS G_CDS: 4.96 Total: -23.33 kcal Atomic # 7 Polarization: -104.78 SS G_CDS: -3.21 Total: -107.99 kcal Atomic # 8 Polarization: -9.19 SS G_CDS: -0.90 Total: -10.09 kcal Atomic # 14 Polarization: 39.40 SS G_CDS: 2.03 Total: 41.42 kcal Atomic # 17 Polarization: -1.08 SS G_CDS: -0.08 Total: -1.16 kcal Total: -68.41 3.11 -65.31 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320656282.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.145 kcal (2) G-P(sol) polarization free energy of solvation -68.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.307 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds