Wall clock time and date at job start Tue Mar 31 2020 11:59:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08994 * 109.47058 * 2 1 4 4 N 1.46500 * 109.46678 * 239.99810 * 2 1 3 5 5 C 1.39780 * 120.00112 * 89.09334 * 4 2 1 6 6 C 1.38954 * 120.00388 * 359.71922 * 5 4 2 7 7 C 1.38009 * 119.99074 * 179.72102 * 6 5 4 8 8 C 1.38901 * 120.00853 * 0.55956 * 7 6 5 9 9 O 1.35794 * 119.99590 * 179.70108 * 8 7 6 10 10 C 1.34813 * 117.00116 * 185.93330 * 9 8 7 11 11 H 1.08001 * 119.99667 * 354.90071 * 10 9 8 12 12 C 1.38619 * 120.00041 * 174.90013 * 10 9 8 13 13 N 1.31585 * 120.00099 * 0.02562 * 12 10 9 14 14 Si 1.86793 * 120.00089 * 179.97438 * 12 10 9 15 15 H 1.48507 * 109.46997 * 0.02562 * 14 12 10 16 16 H 1.48501 * 109.47454 * 119.99988 * 14 12 10 17 17 H 1.48502 * 109.47557 * 240.00396 * 14 12 10 18 18 C 1.38903 * 120.00842 * 359.71684 * 8 7 6 19 19 C 1.38005 * 120.00841 * 0.02562 * 18 8 7 20 20 C 1.50701 * 109.46995 * 120.00216 * 2 1 3 21 21 C 1.38607 * 120.42686 * 93.83492 * 20 2 1 22 22 C 1.38671 * 118.43695 * 180.02562 * 21 20 2 23 23 C 1.38188 * 119.19098 * 359.97438 * 22 21 20 24 24 N 1.31874 * 120.77945 * 359.97438 * 23 22 21 25 25 C 1.31982 * 121.71123 * 359.71376 * 24 23 22 26 26 Cl 1.73595 * 119.63499 * 180.28447 * 25 24 23 27 27 H 1.09001 * 109.47479 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.47174 * 299.99934 * 1 2 3 29 29 H 1.08998 * 109.47543 * 59.99648 * 1 2 3 30 30 H 0.97001 * 119.99908 * 269.08674 * 4 2 1 31 31 H 1.08001 * 120.00436 * 0.02562 * 6 5 4 32 32 H 1.08004 * 119.99497 * 180.25288 * 7 6 5 33 33 H 0.96997 * 120.00170 * 179.97438 * 13 12 10 34 34 H 1.08000 * 119.99314 * 179.97438 * 18 8 7 35 35 H 1.07993 * 120.00275 * 179.97438 * 19 18 8 36 36 H 1.08000 * 120.77766 * 0.02562 * 21 20 2 37 37 H 1.08000 * 120.40015 * 179.97438 * 22 21 20 38 38 H 1.07998 * 119.60662 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0182 -0.6907 -1.1962 5 6 2.2331 0.0248 -2.3776 6 6 1.9780 1.3901 -2.4192 7 6 2.1958 2.0974 -3.5842 8 6 2.6587 1.4424 -4.7183 9 8 2.8670 2.1375 -5.8661 10 6 3.1978 1.4249 -6.9616 11 1 3.3668 0.3611 -6.8831 12 6 3.3209 2.0575 -8.1889 13 7 3.1155 3.3537 -8.2844 14 14 3.7800 1.0703 -9.7067 15 1 3.9560 -0.3565 -9.3346 16 1 2.6998 1.1877 -10.7190 17 1 5.0485 1.5947 -10.2734 18 6 2.9082 0.0766 -4.6785 19 6 2.6957 -0.6302 -3.5124 20 6 2.0323 -0.7105 1.2305 21 6 2.3416 -2.0608 1.1842 22 6 2.8000 -2.6732 2.3409 23 6 2.9331 -1.9227 3.4935 24 7 2.6305 -0.6392 3.5018 25 6 2.1973 -0.0215 2.4189 26 17 1.8216 1.6719 2.4888 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 2.1925 -1.6445 -1.1683 31 1 1.6142 1.8987 -1.5387 32 1 2.0015 3.1593 -3.6154 33 1 3.2020 3.7965 -9.1431 34 1 3.2677 -0.4325 -5.5605 35 1 2.8894 -1.6922 -3.4817 36 1 2.2283 -2.6227 0.2689 37 1 3.0499 -3.7239 2.3407 38 1 3.2891 -2.3929 4.3983 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001320670506.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:59:39 Heat of formation + Delta-G solvation = 38.810781 kcal Electronic energy + Delta-G solvation = -22871.103686 eV Core-core repulsion = 19319.483992 eV Total energy + Delta-G solvation = -3551.619694 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.088 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.82816 -39.08808 -37.49780 -36.92703 -35.54649 -32.66870 -32.24172 -31.64853 -30.32516 -29.46021 -27.15103 -25.20955 -24.63263 -23.84322 -22.45498 -21.41043 -20.35392 -18.13543 -17.79081 -17.50411 -16.77537 -16.49806 -15.51363 -15.10161 -15.01055 -14.51503 -14.36334 -14.10549 -13.81141 -13.51948 -13.38960 -13.20996 -12.89076 -12.64772 -12.41906 -12.24565 -11.96675 -11.66939 -11.65526 -11.54581 -11.27021 -11.16013 -10.98635 -10.53832 -10.35828 -10.20212 -10.00728 -9.37200 -9.23580 -9.15482 -8.48898 -8.19815 -6.46183 -6.33785 -3.91120 0.50801 0.74413 1.52045 2.17868 2.53276 3.17013 3.18442 3.21727 3.23637 3.58692 4.00671 4.04832 4.29779 4.37413 4.59793 4.65324 4.77273 4.90297 5.15673 5.20685 5.21889 5.41518 5.47587 5.54681 5.62069 5.65471 5.73140 5.83442 6.01899 6.11495 6.19743 6.22692 6.49586 6.83192 6.87171 7.10666 7.30156 7.30383 7.41270 7.59975 7.88901 8.10508 8.13579 9.12233 9.86387 10.85009 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.027009 B = 0.002572 C = 0.002431 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1036.458099 B =10882.124067 C =11515.983397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.195 3.805 3 H 0.098 0.902 4 N -0.754 5.754 5 C 0.122 3.878 6 C -0.144 4.144 7 C -0.150 4.150 8 C 0.116 3.884 9 O -0.188 6.188 10 C -0.386 4.386 11 H 0.089 0.911 12 C 0.036 3.964 13 N -0.868 5.868 14 Si 0.938 3.062 15 H -0.268 1.268 16 H -0.277 1.277 17 H -0.277 1.277 18 C -0.191 4.191 19 C -0.139 4.139 20 C -0.115 4.115 21 C -0.058 4.058 22 C -0.165 4.165 23 C 0.110 3.890 24 N -0.475 5.475 25 C 0.178 3.822 26 Cl -0.024 7.024 27 H 0.056 0.944 28 H 0.061 0.939 29 H 0.072 0.928 30 H 0.388 0.612 31 H 0.112 0.888 32 H 0.118 0.882 33 H 0.267 0.733 34 H 0.128 0.872 35 H 0.105 0.895 36 H 0.143 0.857 37 H 0.144 0.856 38 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.845 -11.862 21.005 24.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.088 3.912 3 H 0.115 0.885 4 N -0.391 5.391 5 C 0.025 3.975 6 C -0.166 4.166 7 C -0.170 4.170 8 C 0.063 3.937 9 O -0.093 6.093 10 C -0.463 4.463 11 H 0.106 0.894 12 C -0.167 4.167 13 N -0.505 5.505 14 Si 0.763 3.237 15 H -0.193 1.193 16 H -0.203 1.203 17 H -0.203 1.203 18 C -0.211 4.211 19 C -0.161 4.161 20 C -0.119 4.119 21 C -0.084 4.084 22 C -0.185 4.185 23 C -0.047 4.047 24 N -0.186 5.186 25 C 0.013 3.987 26 Cl 0.005 6.995 27 H 0.076 0.924 28 H 0.080 0.920 29 H 0.091 0.909 30 H 0.223 0.777 31 H 0.130 0.870 32 H 0.136 0.864 33 H 0.077 0.923 34 H 0.145 0.855 35 H 0.123 0.877 36 H 0.161 0.839 37 H 0.162 0.838 38 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -2.842 -10.659 21.634 24.284 hybrid contribution 0.231 -1.336 -1.428 1.969 sum -2.611 -11.995 20.206 23.643 Atomic orbital electron populations 1.22272 0.94645 1.02460 1.02778 1.19577 0.93797 0.96576 0.81266 0.88467 1.44283 1.77373 1.09254 1.08147 1.17329 1.02661 0.91334 0.86165 1.20221 1.06572 0.92206 0.97607 1.20037 1.05745 0.99696 0.91473 1.19250 0.95471 0.90493 0.88474 1.83988 1.76966 1.34042 1.14255 1.21280 1.47673 0.92954 0.84419 0.89389 1.25221 0.97293 0.96092 0.98103 1.70058 1.46590 1.08339 1.25472 0.85698 0.78295 0.79131 0.80569 1.19263 1.20305 1.20308 1.20985 1.07224 0.94465 0.98382 1.20198 1.05328 0.98377 0.92190 1.20816 1.00530 0.94906 0.95599 1.21387 0.94883 0.93205 0.98954 1.22242 1.00596 1.02027 0.93602 1.22691 0.95474 0.88060 0.98442 1.67043 1.11325 1.11401 1.28781 1.21455 0.98800 0.88258 0.90156 1.98421 1.91948 1.10876 1.98273 0.92440 0.92025 0.90862 0.77664 0.87013 0.86443 0.92325 0.85475 0.87671 0.83893 0.83818 0.81736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.69 9.50 37.16 0.35 -1.34 16 2 C 0.20 2.20 2.13 -69.08 -0.15 2.05 16 3 H 0.10 1.21 5.18 -51.93 -0.27 0.94 16 4 N -0.75 -9.44 5.13 -53.24 -0.27 -9.71 16 5 C 0.12 2.01 6.66 -83.70 -0.56 1.46 16 6 C -0.14 -2.54 9.20 -39.40 -0.36 -2.90 16 7 C -0.15 -3.15 9.98 -39.42 -0.39 -3.54 16 8 C 0.12 2.79 6.65 -39.09 -0.26 2.53 16 9 O -0.19 -5.41 9.76 -0.04 0.00 -5.41 16 10 C -0.39 -10.91 9.48 30.87 0.29 -10.62 16 11 H 0.09 2.30 5.20 -52.49 -0.27 2.02 16 12 C 0.04 1.00 5.49 -17.52 -0.10 0.91 16 13 N -0.87 -25.89 13.67 55.48 0.76 -25.13 16 14 Si 0.94 20.81 29.55 -169.99 -5.02 15.79 16 15 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 16 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 17 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 18 C -0.19 -4.09 9.16 -39.42 -0.36 -4.45 16 19 C -0.14 -2.47 9.89 -39.40 -0.39 -2.86 16 20 C -0.11 -1.18 5.07 -104.44 -0.53 -1.71 16 21 C -0.06 -0.48 9.36 -39.29 -0.37 -0.84 16 22 C -0.16 -1.11 10.11 -39.44 -0.40 -1.50 16 23 C 0.11 0.87 11.18 -17.55 -0.20 0.67 16 24 N -0.48 -5.19 10.34 -10.36 -0.11 -5.30 16 25 C 0.18 2.00 7.27 -17.44 -0.13 1.87 16 26 Cl -0.02 -0.26 27.51 -51.86 -1.43 -1.69 16 27 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.06 0.58 8.12 -51.93 -0.42 0.16 16 29 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 30 H 0.39 4.06 6.39 -40.82 -0.26 3.80 16 31 H 0.11 1.70 6.16 -52.49 -0.32 1.37 16 32 H 0.12 2.39 8.06 -52.48 -0.42 1.97 16 33 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 34 H 0.13 2.75 5.63 -52.49 -0.30 2.45 16 35 H 0.11 1.57 8.06 -52.49 -0.42 1.14 16 36 H 0.14 0.92 6.22 -52.49 -0.33 0.59 16 37 H 0.14 0.53 8.06 -52.49 -0.42 0.10 16 38 H 0.17 0.77 8.06 -52.49 -0.42 0.34 16 LS Contribution 338.14 15.07 5.10 5.10 Total: -1.00 -32.41 338.14 -8.36 -40.77 By element: Atomic # 1 Polarization: 9.71 SS G_CDS: -3.84 Total: 5.87 kcal Atomic # 6 Polarization: -16.74 SS G_CDS: -3.54 Total: -20.28 kcal Atomic # 7 Polarization: -40.52 SS G_CDS: 0.38 Total: -40.14 kcal Atomic # 8 Polarization: -5.41 SS G_CDS: 0.00 Total: -5.41 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.79 kcal Atomic # 17 Polarization: -0.26 SS G_CDS: -1.43 Total: -1.69 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -32.41 -8.36 -40.77 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320670506.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.576 kcal (2) G-P(sol) polarization free energy of solvation -32.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.765 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds