Wall clock time and date at job start Tue Mar 31 2020 11:59:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08994 * 109.47058 * 2 1 4 4 N 1.46500 * 109.46678 * 239.99810 * 2 1 3 5 5 C 1.39780 * 120.00112 * 89.09334 * 4 2 1 6 6 C 1.38954 * 120.00388 * 359.71922 * 5 4 2 7 7 C 1.38009 * 119.99074 * 179.72102 * 6 5 4 8 8 C 1.38901 * 120.00853 * 0.55956 * 7 6 5 9 9 O 1.35794 * 119.99590 * 179.70108 * 8 7 6 10 10 C 1.34813 * 117.00116 * 185.93330 * 9 8 7 11 11 H 1.08001 * 119.99667 * 354.90071 * 10 9 8 12 12 C 1.38619 * 120.00041 * 174.90013 * 10 9 8 13 13 N 1.31585 * 120.00099 * 0.02562 * 12 10 9 14 14 Si 1.86793 * 120.00089 * 179.97438 * 12 10 9 15 15 H 1.48507 * 109.46997 * 0.02562 * 14 12 10 16 16 H 1.48501 * 109.47454 * 119.99988 * 14 12 10 17 17 H 1.48502 * 109.47557 * 240.00396 * 14 12 10 18 18 C 1.38903 * 120.00842 * 359.71684 * 8 7 6 19 19 C 1.38005 * 120.00841 * 0.02562 * 18 8 7 20 20 C 1.50701 * 109.46995 * 120.00216 * 2 1 3 21 21 C 1.38607 * 120.42686 * 93.83492 * 20 2 1 22 22 C 1.38671 * 118.43695 * 180.02562 * 21 20 2 23 23 C 1.38188 * 119.19098 * 359.97438 * 22 21 20 24 24 N 1.31874 * 120.77945 * 359.97438 * 23 22 21 25 25 C 1.31982 * 121.71123 * 359.71376 * 24 23 22 26 26 Cl 1.73595 * 119.63499 * 180.28447 * 25 24 23 27 27 H 1.09001 * 109.47479 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.47174 * 299.99934 * 1 2 3 29 29 H 1.08998 * 109.47543 * 59.99648 * 1 2 3 30 30 H 0.97001 * 119.99908 * 269.08674 * 4 2 1 31 31 H 1.08001 * 120.00436 * 0.02562 * 6 5 4 32 32 H 1.08004 * 119.99497 * 180.25288 * 7 6 5 33 33 H 0.96997 * 120.00170 * 179.97438 * 13 12 10 34 34 H 1.08000 * 119.99314 * 179.97438 * 18 8 7 35 35 H 1.07993 * 120.00275 * 179.97438 * 19 18 8 36 36 H 1.08000 * 120.77766 * 0.02562 * 21 20 2 37 37 H 1.08000 * 120.40015 * 179.97438 * 22 21 20 38 38 H 1.07998 * 119.60662 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0182 -0.6907 -1.1962 5 6 2.2331 0.0248 -2.3776 6 6 1.9780 1.3901 -2.4192 7 6 2.1958 2.0974 -3.5842 8 6 2.6587 1.4424 -4.7183 9 8 2.8670 2.1375 -5.8661 10 6 3.1978 1.4249 -6.9616 11 1 3.3668 0.3611 -6.8831 12 6 3.3209 2.0575 -8.1889 13 7 3.1155 3.3537 -8.2844 14 14 3.7800 1.0703 -9.7067 15 1 3.9560 -0.3565 -9.3346 16 1 2.6998 1.1877 -10.7190 17 1 5.0485 1.5947 -10.2734 18 6 2.9082 0.0766 -4.6785 19 6 2.6957 -0.6302 -3.5124 20 6 2.0323 -0.7105 1.2305 21 6 2.3416 -2.0608 1.1842 22 6 2.8000 -2.6732 2.3409 23 6 2.9331 -1.9227 3.4935 24 7 2.6305 -0.6392 3.5018 25 6 2.1973 -0.0215 2.4189 26 17 1.8216 1.6719 2.4888 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 2.1925 -1.6445 -1.1683 31 1 1.6142 1.8987 -1.5387 32 1 2.0015 3.1593 -3.6154 33 1 3.2020 3.7965 -9.1431 34 1 3.2677 -0.4325 -5.5605 35 1 2.8894 -1.6922 -3.4817 36 1 2.2283 -2.6227 0.2689 37 1 3.0499 -3.7239 2.3407 38 1 3.2891 -2.3929 4.3983 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001320670506.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:59:38 Heat of formation + Delta-G solvation = 18.435068 kcal Electronic energy + Delta-G solvation = -22871.987243 eV Core-core repulsion = 19319.483992 eV Total energy + Delta-G solvation = -3552.503251 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.088 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.55486 -40.67144 -38.96306 -37.70105 -36.86509 -34.25187 -33.34466 -32.76918 -31.78754 -30.40772 -28.64683 -27.08378 -25.41916 -24.60469 -23.89291 -22.72426 -21.64991 -19.67127 -18.99139 -18.73964 -18.09232 -17.43207 -16.68271 -16.31426 -16.05880 -15.78816 -15.47467 -15.41398 -15.30621 -14.88519 -14.49742 -14.44349 -14.10974 -13.95333 -13.59330 -13.46768 -13.20264 -13.02669 -12.86936 -12.65932 -12.61741 -12.48448 -12.25079 -12.07082 -11.87402 -11.07964 -11.02865 -10.85275 -10.68123 -10.25530 -9.89497 -9.76447 -8.38459 -7.97352 -6.02204 -0.14783 0.10805 0.59690 0.78452 0.93152 1.37713 1.46530 1.55847 2.23238 2.44814 2.61145 2.92237 3.24880 3.31505 3.63700 3.67146 3.77027 3.98597 4.03898 4.15180 4.20206 4.30118 4.36658 4.50304 4.58477 4.62349 4.82742 4.83781 4.87894 5.01143 5.09006 5.13800 5.24898 5.30669 5.47614 5.50488 5.55925 5.79151 5.96841 6.12591 6.54220 6.66127 6.97826 7.07609 7.94791 8.86421 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.027009 B = 0.002572 C = 0.002431 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1036.458099 B =10882.124067 C =11515.983397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.195 3.805 3 H 0.085 0.915 4 N -0.737 5.737 5 C 0.154 3.846 6 C -0.145 4.145 7 C -0.157 4.157 8 C 0.065 3.935 9 O -0.243 6.243 10 C -0.404 4.404 11 H 0.100 0.900 12 C -0.030 4.030 13 N -0.928 5.928 14 Si 1.017 2.983 15 H -0.250 1.250 16 H -0.271 1.271 17 H -0.271 1.271 18 C -0.193 4.193 19 C -0.139 4.139 20 C -0.126 4.126 21 C -0.062 4.062 22 C -0.150 4.150 23 C 0.106 3.894 24 N -0.503 5.503 25 C 0.159 3.841 26 Cl -0.039 7.039 27 H 0.068 0.932 28 H 0.068 0.932 29 H 0.060 0.940 30 H 0.404 0.596 31 H 0.138 0.862 32 H 0.110 0.890 33 H 0.269 0.731 34 H 0.120 0.880 35 H 0.144 0.856 36 H 0.164 0.836 37 H 0.182 0.818 38 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.682 -15.954 23.031 28.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.089 3.911 3 H 0.102 0.898 4 N -0.373 5.373 5 C 0.054 3.946 6 C -0.167 4.167 7 C -0.176 4.176 8 C 0.015 3.985 9 O -0.151 6.151 10 C -0.480 4.480 11 H 0.117 0.883 12 C -0.226 4.226 13 N -0.568 5.568 14 Si 0.837 3.163 15 H -0.173 1.173 16 H -0.196 1.196 17 H -0.196 1.196 18 C -0.213 4.213 19 C -0.161 4.161 20 C -0.130 4.130 21 C -0.088 4.088 22 C -0.169 4.169 23 C -0.051 4.051 24 N -0.214 5.214 25 C -0.005 4.005 26 Cl -0.010 7.010 27 H 0.087 0.913 28 H 0.087 0.913 29 H 0.079 0.921 30 H 0.242 0.758 31 H 0.155 0.845 32 H 0.129 0.871 33 H 0.078 0.922 34 H 0.138 0.862 35 H 0.162 0.838 36 H 0.182 0.818 37 H 0.199 0.801 38 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges -2.695 -14.806 23.753 28.120 hybrid contribution 0.128 -0.256 -1.588 1.614 sum -2.568 -15.062 22.165 26.921 Atomic orbital electron populations 1.22210 0.93791 1.03151 1.02535 1.19580 0.94355 0.96031 0.81163 0.89769 1.44295 1.75954 1.09966 1.07111 1.17417 0.99067 0.90965 0.87106 1.20449 1.06144 0.92977 0.97153 1.20214 1.05677 0.99809 0.91945 1.19737 0.98465 0.92093 0.88158 1.83939 1.79723 1.35788 1.15679 1.21802 1.47504 0.93681 0.85033 0.88263 1.26537 0.97185 0.97315 1.01550 1.70216 1.49477 1.10611 1.26485 0.84548 0.78059 0.78122 0.75592 1.17325 1.19610 1.19629 1.21062 1.07012 0.93526 0.99669 1.20484 1.04530 1.00082 0.90966 1.20673 1.01897 0.95875 0.94540 1.21717 0.94312 0.92320 1.00458 1.22650 0.98377 1.03598 0.92290 1.23339 0.94349 0.87157 1.00225 1.67036 1.12321 1.13065 1.29008 1.21514 1.00162 0.87975 0.90845 1.98410 1.92153 1.12122 1.98330 0.91261 0.91318 0.92117 0.75791 0.84473 0.87147 0.92197 0.86204 0.83792 0.81847 0.80052 0.78797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.89 9.50 71.98 0.68 -2.20 16 2 C 0.20 3.87 2.13 44.24 0.09 3.96 16 3 H 0.08 1.93 5.18 -2.39 -0.01 1.92 16 4 N -0.74 -15.64 5.13 -322.35 -1.65 -17.29 16 5 C 0.15 4.67 6.66 38.22 0.25 4.93 16 6 C -0.15 -4.97 9.20 22.39 0.21 -4.76 16 7 C -0.16 -6.80 9.98 22.37 0.22 -6.58 16 8 C 0.07 3.27 6.65 22.59 0.15 3.42 16 9 O -0.24 -14.94 9.76 -23.05 -0.22 -15.17 16 10 C -0.40 -23.87 9.48 67.91 0.64 -23.22 16 11 H 0.10 5.36 5.20 -2.91 -0.02 5.34 16 12 C -0.03 -1.73 5.49 84.82 0.47 -1.27 16 13 N -0.93 -58.39 13.67 21.61 0.30 -58.09 16 14 Si 1.02 43.67 29.55 68.60 2.03 45.70 16 15 H -0.25 -9.81 7.11 99.48 0.71 -9.10 16 16 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 17 H -0.27 -11.21 7.11 99.48 0.71 -10.51 16 18 C -0.19 -8.30 9.16 22.37 0.20 -8.10 16 19 C -0.14 -4.56 9.89 22.39 0.22 -4.34 16 20 C -0.13 -2.22 5.07 -19.75 -0.10 -2.32 16 21 C -0.06 -0.74 9.36 22.46 0.21 -0.53 16 22 C -0.15 -1.27 10.11 22.36 0.23 -1.05 16 23 C 0.11 1.27 11.18 84.67 0.95 2.21 16 24 N -0.50 -9.89 10.34 -186.70 -1.93 -11.82 16 25 C 0.16 3.27 7.27 84.70 0.62 3.89 16 26 Cl -0.04 -0.83 27.51 -2.72 -0.07 -0.90 16 27 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 28 H 0.07 1.17 8.12 -2.38 -0.02 1.16 16 29 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 30 H 0.40 6.39 6.39 -92.71 -0.59 5.80 16 31 H 0.14 3.97 6.16 -2.91 -0.02 3.95 16 32 H 0.11 4.80 8.06 -2.91 -0.02 4.78 16 33 H 0.27 15.51 8.31 -92.71 -0.77 14.74 16 34 H 0.12 5.24 5.63 -2.91 -0.02 5.22 16 35 H 0.14 3.62 8.06 -2.91 -0.02 3.60 16 36 H 0.16 1.19 6.22 -2.91 -0.02 1.18 16 37 H 0.18 0.18 8.06 -2.91 -0.02 0.15 16 38 H 0.20 0.98 8.06 -2.91 -0.02 0.95 16 Total: -1.00 -76.53 338.14 4.01 -72.52 By element: Atomic # 1 Polarization: 20.49 SS G_CDS: 0.53 Total: 21.01 kcal Atomic # 6 Polarization: -41.01 SS G_CDS: 5.05 Total: -35.96 kcal Atomic # 7 Polarization: -83.91 SS G_CDS: -3.29 Total: -87.20 kcal Atomic # 8 Polarization: -14.94 SS G_CDS: -0.22 Total: -15.17 kcal Atomic # 14 Polarization: 43.67 SS G_CDS: 2.03 Total: 45.70 kcal Atomic # 17 Polarization: -0.83 SS G_CDS: -0.07 Total: -0.90 kcal Total: -76.53 4.01 -72.52 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320670506.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.954 kcal (2) G-P(sol) polarization free energy of solvation -76.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.425 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.519 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds