Wall clock time and date at job start Tue Mar 31 2020 12:44:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86800 * 120.00205 * 2 1 4 4 H 1.48496 * 109.47231 * 240.00397 * 3 2 1 5 5 H 1.48507 * 109.46883 * 0.02562 * 3 2 1 6 6 H 1.48494 * 109.47281 * 119.99946 * 3 2 1 7 7 C 1.37874 * 120.00252 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00425 * 180.02562 * 7 2 1 9 9 C 1.50705 * 119.99782 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.47158 * 180.02562 * 9 7 2 11 11 N 1.46495 * 109.47137 * 179.97438 * 10 9 7 12 12 C 1.34778 * 120.00011 * 179.97438 * 11 10 9 13 13 O 1.21364 * 120.00287 * 0.02562 * 12 11 10 14 14 C 1.49352 * 120.00196 * 179.97438 * 12 11 10 15 15 O 1.21382 * 120.00111 * 0.02562 * 14 12 11 16 16 N 1.34778 * 120.00196 * 179.97438 * 14 12 11 17 17 C 1.39764 * 120.00135 * 184.61780 * 16 14 12 18 18 C 1.39062 * 119.92098 * 324.62555 * 17 16 14 19 19 C 1.38335 * 120.14353 * 179.78499 * 18 17 16 20 20 C 1.37628 * 120.05153 * 0.46780 * 19 18 17 21 21 C 1.39791 * 120.42747 * 359.78398 * 20 19 18 22 22 C 1.38655 * 119.92463 * 144.89576 * 17 16 14 23 23 C 1.47458 * 108.03567 * 179.97438 * 21 20 19 24 24 O 1.21474 * 124.89618 * 180.02562 * 23 21 20 25 25 O 1.34335 * 110.20902 * 359.97438 * 23 21 20 26 26 C 1.45377 * 109.02138 * 0.02562 * 25 23 21 27 27 H 0.96994 * 120.00013 * 0.02562 * 1 2 3 28 28 H 1.09002 * 109.47285 * 60.00379 * 9 7 2 29 29 H 1.08999 * 109.47197 * 300.00272 * 9 7 2 30 30 H 1.09006 * 109.47249 * 59.99786 * 10 9 7 31 31 H 1.08999 * 109.47193 * 300.00157 * 10 9 7 32 32 H 0.96999 * 120.00563 * 0.02562 * 11 10 9 33 33 H 0.96993 * 120.00198 * 4.62002 * 16 14 12 34 34 H 1.08003 * 119.92533 * 359.97438 * 18 17 16 35 35 H 1.07990 * 119.97281 * 180.25535 * 19 18 17 36 36 H 1.08005 * 120.12968 * 0.02562 * 22 17 16 37 37 H 1.09004 * 110.07012 * 119.24225 * 26 25 23 38 38 H 1.09002 * 110.06214 * 240.70018 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6964 1.2124 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 7 1.5128 -4.9307 0.0001 12 6 2.1867 -6.0980 -0.0003 13 8 3.4003 -6.0980 -0.0007 14 6 1.4400 -7.3914 0.0009 15 8 0.2261 -7.3915 0.0018 16 7 2.1139 -8.5586 -0.0001 17 6 1.4183 -9.7671 -0.0964 18 6 0.1757 -9.9027 0.5131 19 6 -0.5187 -11.0953 0.4169 20 6 0.0233 -12.1546 -0.2747 21 6 1.2738 -12.0343 -0.8878 22 6 1.9713 -10.8297 -0.7946 23 6 1.5861 -13.3176 -1.5434 24 8 2.6021 -13.5501 -2.1674 25 8 0.5857 -14.1930 -1.3502 26 6 -0.4545 -13.5567 -0.5587 27 1 -0.4850 0.8400 -0.0004 28 1 0.6241 -2.5567 -0.8903 29 1 0.6247 -2.5571 0.8896 30 1 2.8720 -3.6043 0.8895 31 1 2.8719 -3.6043 -0.8905 32 1 0.5428 -4.9308 0.0000 33 1 3.0815 -8.5600 0.0661 34 1 -0.2494 -9.0741 1.0601 35 1 -1.4853 -11.1962 0.8878 36 1 2.9386 -10.7255 -1.2637 37 1 -1.3876 -13.5272 -1.1215 38 1 -0.5986 -14.0998 0.3753 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001323450355.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:44:50 Heat of formation + Delta-G solvation = -112.563904 kcal Electronic energy + Delta-G solvation = -24557.922298 eV Core-core repulsion = 20559.029341 eV Total energy + Delta-G solvation = -3998.892957 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.109 amu Computer time = 1.44 seconds Orbital eigenvalues (eV) -42.07917 -41.05883 -39.24226 -38.20030 -37.70469 -35.71746 -34.86946 -32.95278 -31.76681 -31.32229 -29.93791 -27.72759 -25.95746 -24.79388 -24.09761 -22.24249 -21.56786 -21.09292 -20.36790 -18.95706 -18.33993 -17.51268 -17.24511 -16.82991 -16.63522 -16.25891 -15.99690 -15.51222 -15.23169 -14.98498 -14.58177 -14.49425 -14.30197 -14.15030 -14.01255 -13.69627 -13.40935 -13.04999 -12.80514 -12.37900 -12.17714 -11.69352 -11.55564 -11.32868 -11.10970 -10.87805 -10.74476 -10.63307 -10.48376 -9.95577 -9.68597 -9.57167 -9.34314 -8.86669 -8.75558 -8.48617 -6.16115 -4.20248 0.05514 0.50268 1.32298 2.00046 2.12774 2.59385 3.01800 3.21829 3.23412 3.26667 3.31194 3.33672 3.56717 3.59144 4.16687 4.32847 4.46404 4.52424 4.58642 4.65480 4.83793 4.87386 5.16342 5.20879 5.38564 5.52096 5.64520 5.75444 6.04919 6.12583 6.12643 6.25966 6.41875 6.56724 6.66404 6.99736 7.26393 7.43058 7.48668 7.64147 7.80022 8.04131 8.20382 8.84960 9.45069 10.95234 Molecular weight = 318.11amu Principal moments of inertia in cm(-1) A = 0.038558 B = 0.001948 C = 0.001886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 725.996271 B =14367.926166 C =14843.833380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.060 3.940 3 Si 0.899 3.101 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.275 1.275 7 C -0.525 4.525 8 H 0.060 0.940 9 C 0.011 3.989 10 C 0.118 3.882 11 N -0.681 5.681 12 C 0.500 3.500 13 O -0.527 6.527 14 C 0.512 3.488 15 O -0.498 6.498 16 N -0.649 5.649 17 C 0.143 3.857 18 C -0.079 4.079 19 C -0.077 4.077 20 C -0.118 4.118 21 C -0.178 4.178 22 C -0.056 4.056 23 C 0.525 3.475 24 O -0.450 6.450 25 O -0.319 6.319 26 C 0.094 3.906 27 H 0.264 0.736 28 H 0.025 0.975 29 H 0.025 0.975 30 H 0.066 0.934 31 H 0.065 0.935 32 H 0.411 0.589 33 H 0.427 0.573 34 H 0.156 0.844 35 H 0.143 0.857 36 H 0.144 0.856 37 H 0.119 0.881 38 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.881 -25.817 2.124 26.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.142 4.142 3 Si 0.726 3.274 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.201 1.201 7 C -0.564 4.564 8 H 0.078 0.922 9 C -0.026 4.026 10 C -0.004 4.004 11 N -0.332 5.332 12 C 0.279 3.721 13 O -0.404 6.404 14 C 0.295 3.705 15 O -0.371 6.371 16 N -0.297 5.297 17 C 0.048 3.952 18 C -0.099 4.099 19 C -0.096 4.096 20 C -0.119 4.119 21 C -0.180 4.180 22 C -0.076 4.076 23 C 0.367 3.633 24 O -0.335 6.335 25 O -0.234 6.234 26 C 0.020 3.980 27 H 0.073 0.927 28 H 0.044 0.956 29 H 0.044 0.956 30 H 0.084 0.916 31 H 0.084 0.916 32 H 0.247 0.753 33 H 0.266 0.734 34 H 0.174 0.826 35 H 0.160 0.840 36 H 0.162 0.838 37 H 0.136 0.864 38 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -2.564 -25.903 1.741 26.088 hybrid contribution 0.372 1.099 0.053 1.162 sum -2.192 -24.804 1.794 24.965 Atomic orbital electron populations 1.69939 1.06102 1.27159 1.49819 1.25000 0.94918 0.99483 0.94843 0.86542 0.79497 0.82528 0.78794 1.20070 1.21207 1.20082 1.20957 0.93197 0.90185 1.52069 0.92176 1.19358 0.94156 0.90811 0.98286 1.22007 0.96346 0.80441 1.01571 1.46250 1.11877 1.05692 1.69350 1.19628 0.87651 0.84799 0.80036 1.90773 1.12947 1.87242 1.49477 1.20751 0.87837 0.85471 0.76437 1.90763 1.13357 1.87313 1.45656 1.43177 1.12114 1.03136 1.71275 1.17590 0.94064 0.85684 0.97846 1.21646 0.93556 0.98024 0.96666 1.20185 1.00413 0.90525 0.98445 1.20833 0.95558 0.96382 0.99137 1.20487 0.97414 0.95724 1.04389 1.20568 1.00756 0.90319 0.96005 1.20421 0.82080 0.83090 0.77756 1.90909 1.23577 1.80904 1.38089 1.87248 1.29831 1.39451 1.66873 1.22414 0.89955 0.88839 0.96811 0.92657 0.95623 0.95629 0.91616 0.91629 0.75264 0.73395 0.82625 0.83963 0.83849 0.86361 0.86372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.44 13.29 55.43 0.74 -24.70 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 3 Si 0.90 20.79 29.54 -169.99 -5.02 15.77 16 4 H -0.28 -6.28 7.11 56.52 0.40 -5.87 16 5 H -0.29 -6.58 7.11 56.52 0.40 -6.17 16 6 H -0.28 -6.27 7.11 56.52 0.40 -5.86 16 7 C -0.53 -13.98 9.11 -34.44 -0.31 -14.29 16 8 H 0.06 1.55 7.74 -52.48 -0.41 1.14 16 9 C 0.01 0.27 5.09 -27.88 -0.14 0.13 16 10 C 0.12 2.29 5.61 -4.04 -0.02 2.27 16 11 N -0.68 -11.17 5.55 -60.76 -0.34 -11.51 16 12 C 0.50 7.61 7.89 -11.63 -0.09 7.52 16 13 O -0.53 -9.01 16.48 5.48 0.09 -8.91 16 14 C 0.51 6.51 7.72 -11.63 -0.09 6.42 16 15 O -0.50 -6.89 13.91 5.47 0.08 -6.81 16 16 N -0.65 -6.53 5.32 -10.32 -0.05 -6.58 16 17 C 0.14 1.34 6.28 -83.78 -0.53 0.81 16 18 C -0.08 -0.68 8.69 -39.24 -0.34 -1.02 16 19 C -0.08 -0.49 10.02 -39.77 -0.40 -0.88 16 20 C -0.12 -0.78 6.38 -104.20 -0.67 -1.45 16 21 C -0.18 -1.60 6.27 -105.09 -0.66 -2.26 16 22 C -0.06 -0.50 10.02 -38.95 -0.39 -0.89 16 23 C 0.52 5.61 8.58 34.49 0.30 5.91 16 24 O -0.45 -6.28 18.04 -18.92 -0.34 -6.62 16 25 O -0.32 -2.77 11.13 -39.16 -0.44 -3.21 16 26 C 0.09 0.42 7.92 36.07 0.29 0.70 16 27 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 28 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.07 1.30 8.14 -51.93 -0.42 0.87 16 31 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 32 H 0.41 6.32 7.94 -40.82 -0.32 6.00 16 33 H 0.43 3.66 8.30 -40.82 -0.34 3.32 16 34 H 0.16 1.45 6.23 -52.48 -0.33 1.13 16 35 H 0.14 0.49 8.06 -52.49 -0.42 0.07 16 36 H 0.14 1.13 8.06 -52.48 -0.42 0.71 16 37 H 0.12 0.26 8.14 -51.93 -0.42 -0.16 16 38 H 0.12 0.22 8.14 -51.93 -0.42 -0.20 16 LS Contribution 343.12 15.07 5.17 5.17 Total: -1.00 -32.67 343.12 -7.19 -39.85 By element: Atomic # 1 Polarization: 6.97 SS G_CDS: -3.91 Total: 3.06 kcal Atomic # 6 Polarization: 7.66 SS G_CDS: -3.16 Total: 4.50 kcal Atomic # 7 Polarization: -43.14 SS G_CDS: 0.34 Total: -42.79 kcal Atomic # 8 Polarization: -24.95 SS G_CDS: -0.61 Total: -25.56 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.77 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -32.67 -7.19 -39.85 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001323450355.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.713 kcal (2) G-P(sol) polarization free energy of solvation -32.665 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.851 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.44 seconds