Wall clock time and date at job start Tue Mar 31 2020 12:44:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86800 * 120.00205 * 2 1 4 4 H 1.48496 * 109.47231 * 240.00397 * 3 2 1 5 5 H 1.48507 * 109.46883 * 0.02562 * 3 2 1 6 6 H 1.48494 * 109.47281 * 119.99946 * 3 2 1 7 7 C 1.37874 * 120.00252 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00425 * 180.02562 * 7 2 1 9 9 C 1.50705 * 119.99782 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.47158 * 180.02562 * 9 7 2 11 11 N 1.46495 * 109.47137 * 179.97438 * 10 9 7 12 12 C 1.34778 * 120.00011 * 179.97438 * 11 10 9 13 13 O 1.21364 * 120.00287 * 0.02562 * 12 11 10 14 14 C 1.49352 * 120.00196 * 179.97438 * 12 11 10 15 15 O 1.21382 * 120.00111 * 0.02562 * 14 12 11 16 16 N 1.34778 * 120.00196 * 179.97438 * 14 12 11 17 17 C 1.39764 * 120.00135 * 184.61780 * 16 14 12 18 18 C 1.39062 * 119.92098 * 324.62555 * 17 16 14 19 19 C 1.38335 * 120.14353 * 179.78499 * 18 17 16 20 20 C 1.37628 * 120.05153 * 0.46780 * 19 18 17 21 21 C 1.39791 * 120.42747 * 359.78398 * 20 19 18 22 22 C 1.38655 * 119.92463 * 144.89576 * 17 16 14 23 23 C 1.47458 * 108.03567 * 179.97438 * 21 20 19 24 24 O 1.21474 * 124.89618 * 180.02562 * 23 21 20 25 25 O 1.34335 * 110.20902 * 359.97438 * 23 21 20 26 26 C 1.45377 * 109.02138 * 0.02562 * 25 23 21 27 27 H 0.96994 * 120.00013 * 0.02562 * 1 2 3 28 28 H 1.09002 * 109.47285 * 60.00379 * 9 7 2 29 29 H 1.08999 * 109.47197 * 300.00272 * 9 7 2 30 30 H 1.09006 * 109.47249 * 59.99786 * 10 9 7 31 31 H 1.08999 * 109.47193 * 300.00157 * 10 9 7 32 32 H 0.96999 * 120.00563 * 0.02562 * 11 10 9 33 33 H 0.96993 * 120.00198 * 4.62002 * 16 14 12 34 34 H 1.08003 * 119.92533 * 359.97438 * 18 17 16 35 35 H 1.07990 * 119.97281 * 180.25535 * 19 18 17 36 36 H 1.08005 * 120.12968 * 0.02562 * 22 17 16 37 37 H 1.09004 * 110.07012 * 119.24225 * 26 25 23 38 38 H 1.09002 * 110.06214 * 240.70018 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6964 1.2124 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 7 1.5128 -4.9307 0.0001 12 6 2.1867 -6.0980 -0.0003 13 8 3.4003 -6.0980 -0.0007 14 6 1.4400 -7.3914 0.0009 15 8 0.2261 -7.3915 0.0018 16 7 2.1139 -8.5586 -0.0001 17 6 1.4183 -9.7671 -0.0964 18 6 0.1757 -9.9027 0.5131 19 6 -0.5187 -11.0953 0.4169 20 6 0.0233 -12.1546 -0.2747 21 6 1.2738 -12.0343 -0.8878 22 6 1.9713 -10.8297 -0.7946 23 6 1.5861 -13.3176 -1.5434 24 8 2.6021 -13.5501 -2.1674 25 8 0.5857 -14.1930 -1.3502 26 6 -0.4545 -13.5567 -0.5587 27 1 -0.4850 0.8400 -0.0004 28 1 0.6241 -2.5567 -0.8903 29 1 0.6247 -2.5571 0.8896 30 1 2.8720 -3.6043 0.8895 31 1 2.8719 -3.6043 -0.8905 32 1 0.5428 -4.9308 0.0000 33 1 3.0815 -8.5600 0.0661 34 1 -0.2494 -9.0741 1.0601 35 1 -1.4853 -11.1962 0.8878 36 1 2.9386 -10.7255 -1.2637 37 1 -1.3876 -13.5272 -1.1215 38 1 -0.5986 -14.0998 0.3753 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001323450355.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:44:48 Heat of formation + Delta-G solvation = -135.400361 kcal Electronic energy + Delta-G solvation = -24558.912561 eV Core-core repulsion = 20559.029341 eV Total energy + Delta-G solvation = -3999.883220 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.109 amu Computer time = 1.89 seconds Orbital eigenvalues (eV) -42.76507 -42.05493 -40.31144 -39.12905 -38.51575 -36.98654 -36.01488 -34.82491 -32.40675 -32.01935 -31.68889 -28.41707 -27.38573 -25.80720 -25.16944 -23.30965 -22.66720 -22.21838 -21.38143 -20.01077 -19.20445 -18.57056 -18.23825 -17.87281 -17.63708 -17.49087 -17.05482 -16.51163 -16.41256 -16.16467 -16.02958 -15.59154 -15.12486 -14.87789 -14.80413 -14.75192 -14.51238 -14.30450 -14.00240 -13.49333 -13.26744 -12.93537 -12.83496 -12.74697 -12.54830 -12.27974 -12.24177 -11.69371 -11.60857 -11.46304 -11.35670 -10.83538 -10.61145 -10.28326 -10.24971 -9.45733 -8.23486 -6.34319 -0.62704 -0.22878 0.33413 1.05635 1.29975 1.43887 1.45478 1.53498 1.95043 1.98024 2.35790 2.47520 2.48820 2.70199 3.05377 3.11703 3.25615 3.62817 3.88405 4.06557 4.18275 4.36728 4.37311 4.45008 4.46889 4.59428 4.76103 4.81344 4.89555 5.01473 5.02883 5.09223 5.41578 5.47505 5.55350 5.60400 5.73016 5.79627 6.12642 6.21212 6.23319 6.52042 6.76728 6.82985 7.35200 8.88104 Molecular weight = 318.11amu Principal moments of inertia in cm(-1) A = 0.038558 B = 0.001948 C = 0.001886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 725.996271 B =14367.926166 C =14843.833380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.005 3.995 3 Si 0.966 3.034 4 H -0.268 1.268 5 H -0.284 1.284 6 H -0.267 1.267 7 C -0.545 4.545 8 H 0.065 0.935 9 C 0.018 3.982 10 C 0.137 3.863 11 N -0.683 5.683 12 C 0.505 3.495 13 O -0.544 6.544 14 C 0.522 3.478 15 O -0.510 6.510 16 N -0.635 5.635 17 C 0.122 3.878 18 C -0.084 4.084 19 C -0.068 4.068 20 C -0.097 4.097 21 C -0.200 4.200 22 C -0.057 4.057 23 C 0.525 3.475 24 O -0.498 6.498 25 O -0.328 6.328 26 C 0.090 3.910 27 H 0.265 0.735 28 H 0.008 0.992 29 H 0.010 0.990 30 H 0.064 0.936 31 H 0.062 0.938 32 H 0.417 0.583 33 H 0.433 0.567 34 H 0.150 0.850 35 H 0.180 0.820 36 H 0.145 0.855 37 H 0.151 0.849 38 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.744 -26.989 2.816 27.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.194 4.194 3 Si 0.790 3.210 4 H -0.193 1.193 5 H -0.209 1.209 6 H -0.192 1.192 7 C -0.584 4.584 8 H 0.083 0.917 9 C -0.019 4.019 10 C 0.014 3.986 11 N -0.335 5.335 12 C 0.285 3.715 13 O -0.423 6.423 14 C 0.304 3.696 15 O -0.384 6.384 16 N -0.283 5.283 17 C 0.029 3.971 18 C -0.104 4.104 19 C -0.086 4.086 20 C -0.098 4.098 21 C -0.202 4.202 22 C -0.077 4.077 23 C 0.369 3.631 24 O -0.387 6.387 25 O -0.243 6.243 26 C 0.017 3.983 27 H 0.074 0.926 28 H 0.027 0.973 29 H 0.028 0.972 30 H 0.083 0.917 31 H 0.080 0.920 32 H 0.254 0.746 33 H 0.273 0.727 34 H 0.168 0.832 35 H 0.197 0.803 36 H 0.163 0.837 37 H 0.169 0.831 38 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -3.438 -27.125 2.447 27.452 hybrid contribution 0.554 1.326 -0.127 1.443 sum -2.884 -25.799 2.320 26.063 Atomic orbital electron populations 1.70056 1.07609 1.28073 1.50897 1.25891 0.95776 1.03199 0.94489 0.85488 0.78240 0.78084 0.79173 1.19304 1.20940 1.19210 1.21425 0.93764 0.91593 1.51593 0.91724 1.19176 0.94347 0.91790 0.96589 1.21514 0.95113 0.80580 1.01345 1.46034 1.12044 1.05274 1.70099 1.19971 0.87447 0.85319 0.78799 1.90763 1.13869 1.87682 1.49982 1.20074 0.87368 0.85096 0.77046 1.90765 1.13537 1.87327 1.46812 1.43005 1.12410 1.02731 1.70110 1.17655 0.94798 0.85263 0.99434 1.21773 0.93259 0.98926 0.96413 1.20492 1.01357 0.89109 0.97614 1.21122 0.94110 0.97452 0.97142 1.20480 0.98909 0.95150 1.05684 1.20586 1.00959 0.90345 0.95846 1.20646 0.81778 0.83704 0.76947 1.90873 1.25600 1.81813 1.40400 1.87225 1.30100 1.39763 1.67202 1.22935 0.89484 0.87406 0.98435 0.92579 0.97343 0.97179 0.91738 0.91954 0.74645 0.72687 0.83238 0.80290 0.83713 0.83139 0.82760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.50 13.29 21.45 0.28 -53.21 16 2 C 0.01 0.29 5.46 84.65 0.46 0.75 16 3 Si 0.97 42.47 29.54 68.60 2.03 44.50 16 4 H -0.27 -11.40 7.11 99.48 0.71 -10.70 16 5 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 6 H -0.27 -11.32 7.11 99.48 0.71 -10.62 16 7 C -0.55 -29.21 9.11 25.60 0.23 -28.98 16 8 H 0.06 3.32 7.74 -2.91 -0.02 3.30 16 9 C 0.02 0.89 5.09 29.85 0.15 1.04 16 10 C 0.14 5.38 5.61 86.38 0.48 5.87 16 11 N -0.68 -22.47 5.55 -464.51 -2.58 -25.05 16 12 C 0.50 15.21 7.89 87.24 0.69 15.90 16 13 O -0.54 -18.44 16.48 -3.29 -0.05 -18.49 16 14 C 0.52 12.97 7.72 87.24 0.67 13.64 16 15 O -0.51 -13.72 13.91 -3.35 -0.05 -13.76 16 16 N -0.64 -12.37 5.32 -304.91 -1.62 -13.99 16 17 C 0.12 2.17 6.28 38.17 0.24 2.41 16 18 C -0.08 -1.28 8.69 22.49 0.20 -1.09 16 19 C -0.07 -0.61 10.02 22.15 0.22 -0.39 16 20 C -0.10 -0.98 6.38 -19.59 -0.13 -1.11 16 21 C -0.20 -3.36 6.27 -20.17 -0.13 -3.49 16 22 C -0.06 -0.99 10.02 22.68 0.23 -0.76 16 23 C 0.53 11.01 8.58 70.25 0.60 11.62 16 24 O -0.50 -14.39 18.04 19.61 0.35 -14.03 16 25 O -0.33 -5.08 11.13 -52.80 -0.59 -5.66 16 26 C 0.09 0.44 7.92 71.28 0.56 1.01 16 27 H 0.27 14.48 8.31 -92.71 -0.77 13.71 16 28 H 0.01 0.42 8.14 -2.39 -0.02 0.40 16 29 H 0.01 0.50 8.14 -2.39 -0.02 0.48 16 30 H 0.06 2.55 8.14 -2.38 -0.02 2.53 16 31 H 0.06 2.49 8.14 -2.39 -0.02 2.47 16 32 H 0.42 12.91 7.94 -92.71 -0.74 12.17 16 33 H 0.43 7.25 8.30 -92.71 -0.77 6.48 16 34 H 0.15 2.54 6.23 -2.91 -0.02 2.52 16 35 H 0.18 0.32 8.06 -2.92 -0.02 0.30 16 36 H 0.15 2.34 8.06 -2.91 -0.02 2.32 16 37 H 0.15 -0.09 8.14 -2.38 -0.02 -0.11 16 38 H 0.16 -0.23 8.14 -2.39 -0.02 -0.25 16 Total: -1.00 -71.75 343.12 1.91 -69.84 By element: Atomic # 1 Polarization: 13.80 SS G_CDS: -0.36 Total: 13.44 kcal Atomic # 6 Polarization: 11.93 SS G_CDS: 4.49 Total: 16.43 kcal Atomic # 7 Polarization: -88.34 SS G_CDS: -3.91 Total: -92.25 kcal Atomic # 8 Polarization: -51.62 SS G_CDS: -0.33 Total: -51.95 kcal Atomic # 14 Polarization: 42.47 SS G_CDS: 2.03 Total: 44.50 kcal Total: -71.75 1.91 -69.84 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001323450355.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.562 kcal (2) G-P(sol) polarization free energy of solvation -71.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.914 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.838 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.89 seconds