Wall clock time and date at job start Tue Mar 31 2020 12:02:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 H 1.08999 * 109.46673 * 2 1 4 4 C 1.50704 * 109.46791 * 119.99331 * 2 1 3 5 5 H 1.08006 * 119.99597 * 119.99924 * 4 2 1 6 6 C 1.37876 * 120.00090 * 300.00582 * 4 2 1 7 7 N 1.31511 * 120.00138 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 119.99640 * 179.97438 * 6 4 2 9 9 H 1.48498 * 109.47356 * 359.97438 * 8 6 4 10 10 H 1.48500 * 109.47084 * 119.99765 * 8 6 4 11 11 H 1.48504 * 109.47064 * 239.99491 * 8 6 4 12 12 N 1.46502 * 109.47167 * 239.99666 * 2 1 3 13 13 C 1.46495 * 119.99805 * 299.99849 * 12 2 1 14 14 C 1.34774 * 119.99805 * 120.00564 * 12 2 1 15 15 O 1.21566 * 120.00198 * 4.46970 * 14 12 2 16 16 C 1.47704 * 119.99980 * 184.47767 * 14 12 2 17 17 C 1.39021 * 120.26932 * 310.22160 * 16 14 12 18 18 C 1.40513 * 117.98417 * 180.02562 * 17 16 14 19 19 C 1.40548 * 121.19703 * 179.97438 * 18 17 16 20 20 C 1.36138 * 119.62145 * 180.02562 * 19 18 17 21 21 C 1.39343 * 120.83787 * 359.65564 * 20 19 18 22 22 C 1.36140 * 121.08559 * 0.65871 * 21 20 19 23 23 C 1.40534 * 119.81570 * 359.39665 * 22 21 20 24 24 N 1.33808 * 120.80189 * 180.20669 * 23 22 21 25 25 C 1.30952 * 121.70089 * 179.97438 * 24 23 22 26 26 Cl 1.73604 * 119.25205 * 180.02562 * 25 24 23 27 27 H 1.08999 * 109.46277 * 60.00836 * 1 2 3 28 28 H 1.08999 * 109.46673 * 180.02562 * 1 2 3 29 29 H 1.08989 * 109.47183 * 300.00497 * 1 2 3 30 30 H 0.96996 * 119.99736 * 180.02562 * 7 6 4 31 31 H 1.09003 * 109.47353 * 273.13187 * 13 12 2 32 32 H 1.08998 * 109.47333 * 33.13636 * 13 12 2 33 33 H 1.08994 * 109.47080 * 153.13926 * 13 12 2 34 34 H 1.07992 * 121.01216 * 359.97438 * 17 16 14 35 35 H 1.08000 * 120.18717 * 0.07010 * 19 18 17 36 36 H 1.07997 * 119.57970 * 179.97438 * 20 19 18 37 37 H 1.07994 * 119.46041 * 180.30958 * 21 20 19 38 38 H 1.07999 * 120.08937 * 179.67247 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 1.2306 5 1 2.6533 -1.5885 1.1316 6 6 1.6991 -0.2392 2.4828 7 7 0.9434 0.8303 2.6033 8 14 2.3212 -1.1201 4.0081 9 1 3.1453 -2.2875 3.6040 10 1 3.1464 -0.1871 4.8166 11 1 1.1658 -1.5864 4.8162 12 7 2.0184 -0.6907 -1.1961 13 6 1.6646 -2.0932 -1.4278 14 6 2.7934 -0.0357 -2.0832 15 8 3.1543 1.1018 -1.8517 16 6 3.2040 -0.7000 -3.3369 17 6 3.7585 -1.9745 -3.3057 18 6 4.1326 -2.5609 -4.5266 19 6 4.6998 -3.8460 -4.5734 20 6 5.0510 -4.3832 -5.7740 21 6 4.8486 -3.6779 -6.9586 22 6 4.3075 -2.4287 -6.9494 23 6 3.9325 -1.8387 -5.7302 24 7 3.3951 -0.6137 -5.6986 25 6 3.0390 -0.0474 -4.5728 26 17 2.3471 1.5445 -4.6057 27 1 -0.3632 0.5137 -0.8901 28 1 -0.3632 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8898 30 1 0.7093 1.1619 3.4843 31 1 2.3852 -2.7378 -0.9244 32 1 0.6669 -2.2862 -1.0335 33 1 1.6784 -2.2994 -2.4980 34 1 3.8984 -2.4976 -2.3713 35 1 4.8556 -4.4043 -3.6621 36 1 5.4872 -5.3705 -5.8091 37 1 5.1308 -4.1274 -7.8992 38 1 4.1626 -1.8945 -7.8767 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001346411569.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:02:08 Heat of formation + Delta-G solvation = 23.646771 kcal Electronic energy + Delta-G solvation = -23892.271889 eV Core-core repulsion = 20339.994635 eV Total energy + Delta-G solvation = -3552.277255 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.088 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.13005 -39.13509 -37.34115 -36.21694 -35.40935 -33.96467 -32.74452 -30.86350 -30.34535 -29.09765 -26.40674 -25.28894 -24.74681 -24.14857 -22.42112 -21.50831 -19.23101 -18.38075 -17.63361 -17.00830 -16.39318 -15.99347 -15.48729 -15.09777 -14.86556 -14.62776 -14.37013 -14.16548 -13.92765 -13.54422 -13.00379 -12.73055 -12.60000 -12.36107 -12.04739 -11.83447 -11.73208 -11.60088 -11.11174 -11.09127 -11.02616 -10.84614 -10.74522 -10.61364 -10.29346 -10.21244 -10.01225 -9.21799 -9.11974 -8.82291 -8.49610 -8.45992 -7.69569 -6.11023 -4.19295 0.04760 0.39520 1.67270 1.80432 2.46169 3.23404 3.29016 3.31863 3.33773 3.66580 3.83206 4.17865 4.30508 4.35923 4.53095 4.55342 4.75115 4.86554 4.96323 5.05596 5.20654 5.44954 5.54403 5.56253 5.62969 5.70767 5.93404 6.02338 6.11647 6.14224 6.18857 6.48771 6.72074 6.78083 6.99847 7.32672 7.42458 7.49181 7.66250 7.95756 8.12886 8.39512 8.74147 8.90821 9.47141 10.94403 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.017003 B = 0.004002 C = 0.003406 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1646.410225 B = 6995.070753 C = 8217.678444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.259 3.741 3 H 0.067 0.933 4 C -0.526 4.526 5 H 0.060 0.940 6 C 0.065 3.935 7 N -0.886 5.886 8 Si 0.899 3.101 9 H -0.274 1.274 10 H -0.283 1.283 11 H -0.283 1.283 12 N -0.581 5.581 13 C 0.079 3.921 14 C 0.547 3.453 15 O -0.522 6.522 16 C -0.154 4.154 17 C -0.012 4.012 18 C -0.109 4.109 19 C -0.084 4.084 20 C -0.121 4.121 21 C -0.094 4.094 22 C -0.095 4.095 23 C 0.150 3.850 24 N -0.475 5.475 25 C 0.245 3.755 26 Cl -0.001 7.001 27 H 0.013 0.987 28 H 0.031 0.969 29 H 0.095 0.905 30 H 0.263 0.737 31 H 0.053 0.947 32 H 0.076 0.924 33 H 0.052 0.948 34 H 0.158 0.842 35 H 0.136 0.864 36 H 0.130 0.870 37 H 0.132 0.868 38 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.910 -11.135 -16.669 20.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.159 3.841 3 H 0.084 0.916 4 C -0.564 4.564 5 H 0.078 0.922 6 C -0.137 4.137 7 N -0.524 5.524 8 Si 0.727 3.273 9 H -0.198 1.198 10 H -0.209 1.209 11 H -0.209 1.209 12 N -0.311 5.311 13 C -0.064 4.064 14 C 0.331 3.669 15 O -0.399 6.399 16 C -0.161 4.161 17 C -0.038 4.038 18 C -0.111 4.111 19 C -0.103 4.103 20 C -0.139 4.139 21 C -0.114 4.114 22 C -0.114 4.114 23 C 0.029 3.971 24 N -0.185 5.185 25 C 0.065 3.935 26 Cl 0.027 6.973 27 H 0.032 0.968 28 H 0.050 0.950 29 H 0.114 0.886 30 H 0.073 0.927 31 H 0.072 0.928 32 H 0.094 0.906 33 H 0.071 0.929 34 H 0.175 0.825 35 H 0.154 0.846 36 H 0.148 0.852 37 H 0.149 0.851 38 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 4.840 -9.881 -17.211 20.427 hybrid contribution 0.317 -0.835 1.605 1.837 sum 5.157 -10.716 -15.606 19.620 Atomic orbital electron populations 1.22108 0.98001 0.99490 1.01061 1.19029 0.90958 0.94592 0.79478 0.91570 1.21314 1.31938 1.13025 0.90158 0.92199 1.24885 0.94911 0.94960 0.98968 1.69882 1.36285 1.22531 1.23740 0.86435 0.78595 0.79560 0.82755 1.19841 1.20881 1.20930 1.48191 1.48150 1.11610 1.23182 1.21766 1.02108 0.83210 0.99356 1.17787 0.80280 0.86220 0.82565 1.90798 1.54838 1.17611 1.76702 1.20939 1.04252 0.95759 0.95101 1.22130 0.91258 0.92113 0.98324 1.18824 1.02231 0.96563 0.93500 1.21064 0.96832 0.93322 0.99041 1.20946 1.00210 1.00466 0.92259 1.20959 0.97516 0.94127 0.98754 1.20797 0.98866 0.95303 0.96446 1.18755 0.96023 0.89042 0.93311 1.67323 1.12666 1.10514 1.28034 1.21797 0.93870 0.89388 0.88438 1.98454 1.80974 1.19330 1.98508 0.96792 0.95030 0.88618 0.92668 0.92845 0.90570 0.92897 0.82455 0.84650 0.85216 0.85058 0.84421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.47 8.94 37.16 0.33 -3.14 16 2 C 0.26 6.46 2.63 -69.07 -0.18 6.27 16 3 H 0.07 1.92 6.91 -51.93 -0.36 1.56 16 4 C -0.53 -13.81 8.37 -34.44 -0.29 -14.09 16 5 H 0.06 1.54 7.56 -52.48 -0.40 1.14 16 6 C 0.07 1.74 5.30 -17.82 -0.09 1.65 16 7 N -0.89 -24.64 11.32 55.43 0.63 -24.01 16 8 Si 0.90 20.61 29.54 -169.99 -5.02 15.58 16 9 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 10 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 11 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 12 N -0.58 -12.14 2.75 -176.43 -0.49 -12.63 16 13 C 0.08 1.29 8.39 59.84 0.50 1.79 16 14 C 0.55 11.46 6.72 -12.39 -0.08 11.37 16 15 O -0.52 -12.81 15.19 5.31 0.08 -12.73 16 16 C -0.15 -2.64 4.89 -104.80 -0.51 -3.15 16 17 C -0.01 -0.16 7.49 -38.43 -0.29 -0.45 16 18 C -0.11 -1.34 5.74 -106.81 -0.61 -1.95 16 19 C -0.08 -0.76 9.77 -39.47 -0.39 -1.15 16 20 C -0.12 -0.91 9.96 -39.93 -0.40 -1.30 16 21 C -0.09 -0.72 9.94 -39.92 -0.40 -1.12 16 22 C -0.10 -0.97 9.97 -39.47 -0.39 -1.37 16 23 C 0.15 2.01 6.61 -84.78 -0.56 1.45 16 24 N -0.47 -7.42 10.27 -7.80 -0.08 -7.50 16 25 C 0.24 4.17 7.29 -16.99 -0.12 4.05 16 26 Cl 0.00 -0.03 27.28 -51.86 -1.41 -1.44 16 27 H 0.01 0.29 8.14 -51.93 -0.42 -0.13 16 28 H 0.03 0.67 6.68 -51.93 -0.35 0.33 16 29 H 0.10 2.46 6.07 -51.94 -0.32 2.15 16 30 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 31 H 0.05 0.80 7.52 -51.93 -0.39 0.41 16 32 H 0.08 1.24 6.44 -51.93 -0.33 0.91 16 33 H 0.05 0.73 5.69 -51.93 -0.30 0.44 16 34 H 0.16 1.88 6.70 -52.49 -0.35 1.53 16 35 H 0.14 0.92 8.06 -52.49 -0.42 0.50 16 36 H 0.13 0.62 8.06 -52.49 -0.42 0.20 16 37 H 0.13 0.63 8.06 -52.49 -0.42 0.21 16 38 H 0.14 1.22 8.06 -52.49 -0.42 0.80 16 LS Contribution 331.94 15.07 5.00 5.00 Total: -1.00 -31.32 331.94 -8.81 -40.13 By element: Atomic # 1 Polarization: 2.77 SS G_CDS: -4.04 Total: -1.27 kcal Atomic # 6 Polarization: 2.35 SS G_CDS: -3.48 Total: -1.14 kcal Atomic # 7 Polarization: -44.21 SS G_CDS: 0.06 Total: -44.14 kcal Atomic # 8 Polarization: -12.81 SS G_CDS: 0.08 Total: -12.73 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -5.02 Total: 15.58 kcal Atomic # 17 Polarization: -0.03 SS G_CDS: -1.41 Total: -1.44 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -31.32 -8.81 -40.13 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001346411569.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.781 kcal (2) G-P(sol) polarization free energy of solvation -31.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.134 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds