Wall clock time and date at job start Tue Mar 31 2020 12:02:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 H 1.08999 * 109.46673 * 2 1 4 4 C 1.50704 * 109.46791 * 119.99331 * 2 1 3 5 5 H 1.08006 * 119.99597 * 119.99924 * 4 2 1 6 6 C 1.37876 * 120.00090 * 300.00582 * 4 2 1 7 7 N 1.31511 * 120.00138 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 119.99640 * 179.97438 * 6 4 2 9 9 H 1.48498 * 109.47356 * 359.97438 * 8 6 4 10 10 H 1.48500 * 109.47084 * 119.99765 * 8 6 4 11 11 H 1.48504 * 109.47064 * 239.99491 * 8 6 4 12 12 N 1.46502 * 109.47167 * 239.99666 * 2 1 3 13 13 C 1.46495 * 119.99805 * 299.99849 * 12 2 1 14 14 C 1.34774 * 119.99805 * 120.00564 * 12 2 1 15 15 O 1.21566 * 120.00198 * 4.46970 * 14 12 2 16 16 C 1.47704 * 119.99980 * 184.47767 * 14 12 2 17 17 C 1.39021 * 120.26932 * 310.22160 * 16 14 12 18 18 C 1.40513 * 117.98417 * 180.02562 * 17 16 14 19 19 C 1.40548 * 121.19703 * 179.97438 * 18 17 16 20 20 C 1.36138 * 119.62145 * 180.02562 * 19 18 17 21 21 C 1.39343 * 120.83787 * 359.65564 * 20 19 18 22 22 C 1.36140 * 121.08559 * 0.65871 * 21 20 19 23 23 C 1.40534 * 119.81570 * 359.39665 * 22 21 20 24 24 N 1.33808 * 120.80189 * 180.20669 * 23 22 21 25 25 C 1.30952 * 121.70089 * 179.97438 * 24 23 22 26 26 Cl 1.73604 * 119.25205 * 180.02562 * 25 24 23 27 27 H 1.08999 * 109.46277 * 60.00836 * 1 2 3 28 28 H 1.08999 * 109.46673 * 180.02562 * 1 2 3 29 29 H 1.08989 * 109.47183 * 300.00497 * 1 2 3 30 30 H 0.96996 * 119.99736 * 180.02562 * 7 6 4 31 31 H 1.09003 * 109.47353 * 273.13187 * 13 12 2 32 32 H 1.08998 * 109.47333 * 33.13636 * 13 12 2 33 33 H 1.08994 * 109.47080 * 153.13926 * 13 12 2 34 34 H 1.07992 * 121.01216 * 359.97438 * 17 16 14 35 35 H 1.08000 * 120.18717 * 0.07010 * 19 18 17 36 36 H 1.07997 * 119.57970 * 179.97438 * 20 19 18 37 37 H 1.07994 * 119.46041 * 180.30958 * 21 20 19 38 38 H 1.07999 * 120.08937 * 179.67247 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 1.2306 5 1 2.6533 -1.5885 1.1316 6 6 1.6991 -0.2392 2.4828 7 7 0.9434 0.8303 2.6033 8 14 2.3212 -1.1201 4.0081 9 1 3.1453 -2.2875 3.6040 10 1 3.1464 -0.1871 4.8166 11 1 1.1658 -1.5864 4.8162 12 7 2.0184 -0.6907 -1.1961 13 6 1.6646 -2.0932 -1.4278 14 6 2.7934 -0.0357 -2.0832 15 8 3.1543 1.1018 -1.8517 16 6 3.2040 -0.7000 -3.3369 17 6 3.7585 -1.9745 -3.3057 18 6 4.1326 -2.5609 -4.5266 19 6 4.6998 -3.8460 -4.5734 20 6 5.0510 -4.3832 -5.7740 21 6 4.8486 -3.6779 -6.9586 22 6 4.3075 -2.4287 -6.9494 23 6 3.9325 -1.8387 -5.7302 24 7 3.3951 -0.6137 -5.6986 25 6 3.0390 -0.0474 -4.5728 26 17 2.3471 1.5445 -4.6057 27 1 -0.3632 0.5137 -0.8901 28 1 -0.3632 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8898 30 1 0.7093 1.1619 3.4843 31 1 2.3852 -2.7378 -0.9244 32 1 0.6669 -2.2862 -1.0335 33 1 1.6784 -2.2994 -2.4980 34 1 3.8984 -2.4976 -2.3713 35 1 4.8556 -4.4043 -3.6621 36 1 5.4872 -5.3705 -5.8091 37 1 5.1308 -4.1274 -7.8992 38 1 4.1626 -1.8945 -7.8767 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001346411569.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:02:07 Heat of formation + Delta-G solvation = 4.751975 kcal Electronic energy + Delta-G solvation = -23893.091229 eV Core-core repulsion = 20339.994635 eV Total energy + Delta-G solvation = -3553.096594 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.088 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.17616 -40.59218 -38.41983 -37.33934 -37.16199 -35.26889 -34.37542 -32.07880 -31.27325 -30.65184 -27.83158 -27.29688 -25.85792 -25.20133 -23.41659 -22.93739 -20.71268 -19.46162 -18.72786 -18.53127 -18.01048 -17.51890 -16.84868 -16.33408 -16.16417 -15.75441 -15.58909 -15.33269 -15.07878 -14.72636 -14.43696 -14.28468 -13.89393 -13.67253 -13.46636 -13.17635 -12.95889 -12.82523 -12.70554 -12.62386 -12.54351 -12.32219 -12.18270 -12.09850 -12.09379 -11.64747 -11.23696 -11.13225 -10.64452 -10.49172 -9.83592 -9.39981 -9.31655 -8.13094 -6.29574 -0.88238 -0.61382 0.61024 0.80736 1.42575 1.44102 1.46065 1.56016 1.87946 2.18080 2.46310 2.91050 3.14441 3.16004 3.40052 3.44560 3.54867 3.91008 3.94859 4.23878 4.30407 4.31566 4.55018 4.58170 4.63642 4.72078 4.81032 4.88360 4.96566 5.01906 5.04255 5.24302 5.34581 5.45105 5.45743 5.57385 5.66041 5.80603 6.00921 6.15126 6.42471 6.68735 6.77384 7.21189 7.43297 8.91864 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.017003 B = 0.004002 C = 0.003406 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1646.410225 B = 6995.070753 C = 8217.678444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.264 3.736 3 H 0.012 0.988 4 C -0.535 4.535 5 H 0.066 0.934 6 C 0.015 3.985 7 N -0.919 5.919 8 Si 0.966 3.034 9 H -0.261 1.261 10 H -0.288 1.288 11 H -0.276 1.276 12 N -0.587 5.587 13 C 0.077 3.923 14 C 0.546 3.454 15 O -0.574 6.574 16 C -0.183 4.183 17 C 0.007 3.993 18 C -0.117 4.117 19 C -0.086 4.086 20 C -0.106 4.106 21 C -0.069 4.069 22 C -0.117 4.117 23 C 0.129 3.871 24 N -0.485 5.485 25 C 0.226 3.774 26 Cl -0.026 7.026 27 H 0.017 0.983 28 H 0.050 0.950 29 H 0.070 0.930 30 H 0.264 0.736 31 H 0.072 0.928 32 H 0.075 0.925 33 H 0.078 0.922 34 H 0.177 0.823 35 H 0.164 0.836 36 H 0.171 0.829 37 H 0.170 0.830 38 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.595 -16.065 -18.021 25.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.162 3.838 3 H 0.030 0.970 4 C -0.573 4.573 5 H 0.084 0.916 6 C -0.185 4.185 7 N -0.558 5.558 8 Si 0.791 3.209 9 H -0.185 1.185 10 H -0.214 1.214 11 H -0.202 1.202 12 N -0.317 5.317 13 C -0.065 4.065 14 C 0.333 3.667 15 O -0.454 6.454 16 C -0.189 4.189 17 C -0.019 4.019 18 C -0.119 4.119 19 C -0.105 4.105 20 C -0.123 4.123 21 C -0.089 4.089 22 C -0.135 4.135 23 C 0.007 3.993 24 N -0.196 5.196 25 C 0.046 3.954 26 Cl 0.003 6.997 27 H 0.036 0.964 28 H 0.069 0.931 29 H 0.089 0.911 30 H 0.073 0.927 31 H 0.091 0.909 32 H 0.094 0.906 33 H 0.097 0.903 34 H 0.194 0.806 35 H 0.181 0.819 36 H 0.188 0.812 37 H 0.188 0.812 38 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 6.520 -14.859 -18.593 24.679 hybrid contribution -0.076 0.488 1.809 1.875 sum 6.444 -14.372 -16.784 23.017 Atomic orbital electron populations 1.21904 0.97095 1.00295 0.99996 1.18613 0.91578 0.92362 0.81204 0.96974 1.21582 1.31883 1.13109 0.90760 0.91567 1.25743 0.95066 0.95616 1.02068 1.70033 1.37403 1.23958 1.24367 0.85388 0.78158 0.78534 0.78807 1.18464 1.21434 1.20161 1.48131 1.48068 1.13359 1.22096 1.22003 1.02522 0.80602 1.01382 1.18313 0.79288 0.85675 0.83443 1.90750 1.56743 1.20003 1.77935 1.20489 1.08054 0.97511 0.92877 1.22353 0.89156 0.90493 0.99882 1.19027 1.02616 0.97967 0.92241 1.21430 0.96022 0.91824 1.01212 1.21495 0.97901 1.01700 0.91214 1.21489 0.94116 0.92515 1.00758 1.21031 1.00183 0.96721 0.95584 1.19308 0.96253 0.88489 0.95209 1.67285 1.13068 1.11909 1.27371 1.21682 0.95650 0.88991 0.89036 1.98429 1.81584 1.21151 1.98583 0.96359 0.93112 0.91123 0.92688 0.90938 0.90601 0.90320 0.80580 0.81852 0.81173 0.81220 0.83743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.51 8.94 71.99 0.64 -5.87 16 2 C 0.26 13.71 2.63 44.25 0.12 13.83 16 3 H 0.01 0.77 6.91 -2.39 -0.02 0.75 16 4 C -0.53 -28.45 8.37 25.60 0.21 -28.24 16 5 H 0.07 3.35 7.56 -2.91 -0.02 3.33 16 6 C 0.01 0.79 5.30 84.65 0.45 1.23 16 7 N -0.92 -52.70 11.32 21.45 0.24 -52.46 16 8 Si 0.97 42.24 29.54 68.60 2.03 44.27 16 9 H -0.26 -10.75 7.11 99.48 0.71 -10.05 16 10 H -0.29 -12.76 7.11 99.48 0.71 -12.06 16 11 H -0.28 -11.68 7.11 99.48 0.71 -10.97 16 12 N -0.59 -25.10 2.75 -830.37 -2.29 -27.39 16 13 C 0.08 2.40 8.39 127.77 1.07 3.47 16 14 C 0.55 23.93 6.72 86.75 0.58 24.51 16 15 O -0.57 -30.28 15.19 -3.92 -0.06 -30.34 16 16 C -0.18 -6.38 4.89 -19.98 -0.10 -6.48 16 17 C 0.01 0.18 7.49 23.01 0.17 0.36 16 18 C -0.12 -2.54 5.74 -21.28 -0.12 -2.66 16 19 C -0.09 -1.12 9.77 22.34 0.22 -0.90 16 20 C -0.11 -0.91 9.96 22.05 0.22 -0.69 16 21 C -0.07 -0.68 9.94 22.05 0.22 -0.46 16 22 C -0.12 -2.02 9.97 22.34 0.22 -1.80 16 23 C 0.13 3.23 6.61 40.28 0.27 3.49 16 24 N -0.49 -15.33 10.27 -178.58 -1.83 -17.16 16 25 C 0.23 8.01 7.29 85.43 0.62 8.63 16 26 Cl -0.03 -0.98 27.28 -2.72 -0.07 -1.05 16 27 H 0.02 0.81 8.14 -2.39 -0.02 0.79 16 28 H 0.05 2.20 6.68 -2.39 -0.02 2.18 16 29 H 0.07 3.79 6.07 -2.39 -0.01 3.78 16 30 H 0.26 14.34 8.31 -92.71 -0.77 13.57 16 31 H 0.07 1.98 7.52 -2.39 -0.02 1.96 16 32 H 0.08 2.36 6.44 -2.39 -0.02 2.35 16 33 H 0.08 2.04 5.69 -2.39 -0.01 2.03 16 34 H 0.18 3.72 6.70 -2.91 -0.02 3.70 16 35 H 0.16 1.23 8.06 -2.91 -0.02 1.21 16 36 H 0.17 0.24 8.06 -2.91 -0.02 0.21 16 37 H 0.17 0.45 8.06 -2.91 -0.02 0.42 16 38 H 0.14 2.23 8.06 -2.91 -0.02 2.21 16 Total: -1.00 -74.20 331.94 3.92 -70.29 By element: Atomic # 1 Polarization: 4.31 SS G_CDS: 1.10 Total: 5.41 kcal Atomic # 6 Polarization: 3.63 SS G_CDS: 4.80 Total: 8.43 kcal Atomic # 7 Polarization: -93.13 SS G_CDS: -3.88 Total: -97.01 kcal Atomic # 8 Polarization: -30.28 SS G_CDS: -0.06 Total: -30.34 kcal Atomic # 14 Polarization: 42.24 SS G_CDS: 2.03 Total: 44.27 kcal Atomic # 17 Polarization: -0.98 SS G_CDS: -0.07 Total: -1.05 kcal Total: -74.20 3.92 -70.29 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001346411569.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.037 kcal (2) G-P(sol) polarization free energy of solvation -74.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.285 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds