Wall clock time and date at job start Tue Mar 31 2020 12:14:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46506 * 109.47059 * 2 1 4 4 C 1.46503 * 119.99569 * 274.96450 * 3 2 1 5 5 C 1.50707 * 109.46961 * 269.99748 * 4 3 2 6 6 H 1.07998 * 119.99721 * 0.02562 * 5 4 3 7 7 C 1.37871 * 119.99660 * 180.02562 * 5 4 3 8 8 N 1.31520 * 119.99344 * 179.97438 * 7 5 4 9 9 Si 1.86800 * 120.00346 * 359.97438 * 7 5 4 10 10 H 1.48502 * 109.46848 * 89.99925 * 9 7 5 11 11 H 1.48503 * 109.47212 * 209.99973 * 9 7 5 12 12 H 1.48495 * 109.47132 * 330.00337 * 9 7 5 13 13 C 1.34775 * 120.00060 * 94.96212 * 3 2 1 14 14 O 1.21568 * 120.00059 * 185.55117 * 13 3 2 15 15 C 1.47710 * 120.00074 * 5.55460 * 13 3 2 16 16 C 1.39010 * 120.27546 * 55.05269 * 15 13 3 17 17 C 1.40512 * 117.98775 * 179.72619 * 16 15 13 18 18 C 1.40542 * 121.20056 * 180.27385 * 17 16 15 19 19 C 1.36140 * 119.62353 * 180.02562 * 18 17 16 20 20 C 1.39336 * 120.83643 * 359.91355 * 19 18 17 21 21 C 1.36142 * 121.09065 * 0.06595 * 20 19 18 22 22 C 1.40531 * 119.81251 * 359.97438 * 21 20 19 23 23 N 1.33805 * 120.80324 * 180.02562 * 22 21 20 24 24 C 1.30954 * 121.70949 * 179.97438 * 23 22 21 25 25 Cl 1.73596 * 119.25864 * 179.97438 * 24 23 22 26 26 H 1.08998 * 109.47190 * 300.00464 * 1 2 3 27 27 H 1.09004 * 109.46893 * 60.00272 * 1 2 3 28 28 H 1.08998 * 109.47078 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47190 * 239.99536 * 2 1 3 30 30 H 1.09004 * 109.46893 * 119.99728 * 2 1 3 31 31 H 1.08993 * 109.46962 * 29.99920 * 4 3 2 32 32 H 1.09000 * 109.46600 * 150.00295 * 4 3 2 33 33 H 0.96999 * 119.99279 * 179.97438 * 8 7 5 34 34 H 1.07997 * 121.00757 * 0.02562 * 16 15 13 35 35 H 1.07997 * 120.18849 * 359.95544 * 18 17 16 36 36 H 1.07995 * 119.58417 * 179.97438 * 19 18 17 37 37 H 1.08002 * 119.46014 * 180.02562 * 20 19 18 38 38 H 1.07999 * 120.09284 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.1590 2.1084 -1.2640 5 6 3.5418 1.8859 -1.8204 6 1 4.2453 1.2647 -1.2860 7 6 3.9087 2.4755 -3.0115 8 7 5.1157 2.2817 -3.4967 9 14 2.6916 3.5494 -3.9360 10 1 2.8299 4.9569 -3.4832 11 1 2.9674 3.4688 -5.3930 12 1 1.3100 3.0764 -3.6668 13 6 2.3382 1.9830 1.1628 14 8 2.6465 3.1588 1.1741 15 6 2.3141 1.2137 2.4235 16 6 3.0514 0.0413 2.5433 17 6 2.9982 -0.6491 3.7660 18 6 3.7213 -1.8380 3.9628 19 6 3.6459 -2.4810 5.1604 20 6 2.8620 -1.9745 6.1950 21 6 2.1491 -0.8252 6.0389 22 6 2.1996 -0.1321 4.8174 23 7 1.5073 0.9994 4.6426 24 6 1.5418 1.6598 3.5122 25 17 0.6178 3.1210 3.3547 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 1.8934 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 1.4180 1.7455 -1.9763 32 1 2.0045 3.1732 -1.0897 33 1 5.3736 2.6962 -4.3348 34 1 3.6508 -0.3252 1.7231 35 1 4.3323 -2.2399 3.1682 36 1 4.2015 -3.3948 5.3108 37 1 2.8188 -2.5025 7.1361 38 1 1.5464 -0.4473 6.8515 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001348559129.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:14:32 Heat of formation + Delta-G solvation = 22.733690 kcal Electronic energy + Delta-G solvation = -23971.669809 eV Core-core repulsion = 20419.352960 eV Total energy + Delta-G solvation = -3552.316849 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.088 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.15837 -39.21361 -37.36621 -36.27296 -35.51010 -33.83739 -32.69437 -30.84765 -30.38833 -30.30099 -27.77763 -24.97000 -24.21958 -23.07795 -22.52416 -22.16322 -19.46529 -18.41491 -17.64518 -17.00399 -16.93778 -16.13395 -15.70475 -15.11592 -14.77952 -14.66176 -14.35820 -14.22107 -13.73141 -13.53946 -13.38737 -13.17405 -12.71270 -12.50422 -12.35203 -12.07755 -11.86746 -11.81728 -11.54225 -11.17640 -11.10824 -11.02971 -10.92737 -10.62318 -10.42462 -10.19638 -10.04681 -9.59888 -9.21408 -8.84694 -8.63182 -8.48871 -7.82548 -6.13776 -4.13294 0.03710 0.38690 1.66497 1.73776 2.45764 3.21120 3.27192 3.32919 3.35614 3.56255 3.79563 4.15307 4.30442 4.36014 4.49013 4.55763 4.73624 4.84002 4.92100 5.02841 5.20320 5.21507 5.45449 5.47037 5.53441 5.60870 5.67928 5.71265 5.93821 6.02556 6.09928 6.12101 6.14669 6.36361 6.48299 6.64493 6.89881 7.22229 7.44925 7.54563 8.07483 8.39320 8.74778 8.88265 9.46237 10.99311 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.016985 B = 0.004181 C = 0.003729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1648.155836 B = 6696.104058 C = 7507.552710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.097 3.903 3 N -0.581 5.581 4 C 0.217 3.783 5 C -0.532 4.532 6 H 0.075 0.925 7 C 0.075 3.925 8 N -0.896 5.896 9 Si 0.875 3.125 10 H -0.272 1.272 11 H -0.285 1.285 12 H -0.265 1.265 13 C 0.556 3.444 14 O -0.513 6.513 15 C -0.152 4.152 16 C -0.010 4.010 17 C -0.107 4.107 18 C -0.083 4.083 19 C -0.120 4.120 20 C -0.093 4.093 21 C -0.096 4.096 22 C 0.150 3.850 23 N -0.473 5.473 24 C 0.243 3.757 25 Cl -0.006 7.006 26 H 0.050 0.950 27 H 0.062 0.938 28 H 0.062 0.938 29 H 0.088 0.912 30 H 0.069 0.931 31 H 0.033 0.967 32 H 0.040 0.960 33 H 0.265 0.735 34 H 0.160 0.840 35 H 0.137 0.863 36 H 0.130 0.870 37 H 0.132 0.868 38 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.424 -11.467 16.455 21.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.027 4.027 3 N -0.312 5.312 4 C 0.096 3.904 5 C -0.570 4.570 6 H 0.093 0.907 7 C -0.128 4.128 8 N -0.534 5.534 9 Si 0.701 3.299 10 H -0.198 1.198 11 H -0.210 1.210 12 H -0.190 1.190 13 C 0.340 3.660 14 O -0.389 6.389 15 C -0.159 4.159 16 C -0.036 4.036 17 C -0.109 4.109 18 C -0.102 4.102 19 C -0.138 4.138 20 C -0.113 4.113 21 C -0.114 4.114 22 C 0.029 3.971 23 N -0.184 5.184 24 C 0.063 3.937 25 Cl 0.022 6.978 26 H 0.069 0.931 27 H 0.081 0.919 28 H 0.081 0.919 29 H 0.106 0.894 30 H 0.088 0.912 31 H 0.051 0.949 32 H 0.058 0.942 33 H 0.075 0.925 34 H 0.177 0.823 35 H 0.155 0.845 36 H 0.148 0.852 37 H 0.150 0.850 38 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -7.712 -10.402 17.005 21.374 hybrid contribution -0.057 0.371 -1.255 1.310 sum -7.770 -10.032 15.749 20.225 Atomic orbital electron populations 1.22184 0.96409 1.01666 1.02395 1.21676 0.94019 0.83809 1.03175 1.47854 1.62776 1.13634 1.06954 1.19722 0.97879 0.93089 0.79665 1.21291 0.97167 1.31913 1.06675 0.90714 1.24827 0.95147 0.95814 0.97015 1.69891 1.18512 1.44299 1.20694 0.86870 0.81961 0.81834 0.79193 1.19796 1.21033 1.18976 1.17695 0.78954 0.86747 0.82613 1.90806 1.47201 1.14942 1.85925 1.20879 1.00929 0.97403 0.96654 1.22032 0.94229 0.90762 0.96613 1.18815 1.00113 0.97561 0.94434 1.21087 0.97610 0.93273 0.98237 1.20954 0.99244 1.00405 0.93194 1.20966 0.95583 0.95428 0.99311 1.20789 1.00098 0.94921 0.95641 1.18739 0.93411 0.90779 0.94200 1.67292 1.21525 1.07291 1.22257 1.21749 0.92434 0.90212 0.89313 1.98444 1.71055 1.31237 1.97015 0.93063 0.91910 0.91918 0.89396 0.91234 0.94873 0.94161 0.92486 0.82281 0.84535 0.85158 0.85036 0.84421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.25 10.24 37.16 0.38 -1.87 16 2 C 0.10 1.50 5.97 -4.04 -0.02 1.47 16 3 N -0.58 -11.71 2.46 -176.22 -0.43 -12.14 16 4 C 0.22 5.14 4.29 -5.19 -0.02 5.12 16 5 C -0.53 -14.75 9.94 -34.44 -0.34 -15.09 16 6 H 0.07 2.24 8.06 -52.49 -0.42 1.82 16 7 C 0.07 2.12 5.47 -17.82 -0.10 2.03 16 8 N -0.90 -26.98 13.96 55.43 0.77 -26.21 16 9 Si 0.87 21.18 27.47 -169.99 -4.67 16.51 16 10 H -0.27 -6.68 7.11 56.52 0.40 -6.27 16 11 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 12 H -0.27 -6.03 6.54 56.52 0.37 -5.66 16 13 C 0.56 11.49 6.52 -12.39 -0.08 11.41 16 14 O -0.51 -12.55 15.75 5.31 0.08 -12.47 16 15 C -0.15 -2.59 4.92 -104.80 -0.52 -3.10 16 16 C -0.01 -0.14 7.36 -38.44 -0.28 -0.43 16 17 C -0.11 -1.33 5.74 -106.81 -0.61 -1.94 16 18 C -0.08 -0.78 9.77 -39.47 -0.39 -1.16 16 19 C -0.12 -0.92 9.96 -39.93 -0.40 -1.32 16 20 C -0.09 -0.72 9.94 -39.93 -0.40 -1.11 16 21 C -0.10 -0.97 9.97 -39.47 -0.39 -1.36 16 22 C 0.15 1.99 6.61 -84.78 -0.56 1.43 16 23 N -0.47 -7.26 10.27 -7.80 -0.08 -7.34 16 24 C 0.24 4.03 7.30 -16.98 -0.12 3.91 16 25 Cl -0.01 -0.10 27.50 -51.86 -1.43 -1.53 16 26 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 28 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 29 H 0.09 1.36 8.11 -51.93 -0.42 0.94 16 30 H 0.07 0.93 4.43 -51.93 -0.23 0.70 16 31 H 0.03 0.75 7.13 -51.93 -0.37 0.38 16 32 H 0.04 1.03 6.78 -51.93 -0.35 0.68 16 33 H 0.27 7.48 8.31 -40.82 -0.34 7.15 16 34 H 0.16 2.04 7.60 -52.49 -0.40 1.64 16 35 H 0.14 1.00 8.06 -52.49 -0.42 0.58 16 36 H 0.13 0.65 8.06 -52.49 -0.42 0.22 16 37 H 0.13 0.63 8.06 -52.49 -0.42 0.21 16 38 H 0.14 1.20 8.06 -52.49 -0.42 0.78 16 LS Contribution 339.22 15.07 5.11 5.11 Total: -1.00 -33.50 339.22 -8.82 -42.31 By element: Atomic # 1 Polarization: 2.10 SS G_CDS: -4.32 Total: -2.22 kcal Atomic # 6 Polarization: 1.83 SS G_CDS: -3.86 Total: -2.02 kcal Atomic # 7 Polarization: -45.95 SS G_CDS: 0.26 Total: -45.69 kcal Atomic # 8 Polarization: -12.55 SS G_CDS: 0.08 Total: -12.47 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -4.67 Total: 16.51 kcal Atomic # 17 Polarization: -0.10 SS G_CDS: -1.43 Total: -1.53 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -33.50 -8.82 -42.31 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001348559129.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.046 kcal (2) G-P(sol) polarization free energy of solvation -33.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.312 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.734 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds