Wall clock time and date at job start Tue Mar 31 2020 12:14:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46506 * 109.47059 * 2 1 4 4 C 1.46503 * 119.99569 * 274.96450 * 3 2 1 5 5 C 1.50707 * 109.46961 * 269.99748 * 4 3 2 6 6 H 1.07998 * 119.99721 * 0.02562 * 5 4 3 7 7 C 1.37871 * 119.99660 * 180.02562 * 5 4 3 8 8 N 1.31520 * 119.99344 * 179.97438 * 7 5 4 9 9 Si 1.86800 * 120.00346 * 359.97438 * 7 5 4 10 10 H 1.48502 * 109.46848 * 89.99925 * 9 7 5 11 11 H 1.48503 * 109.47212 * 209.99973 * 9 7 5 12 12 H 1.48495 * 109.47132 * 330.00337 * 9 7 5 13 13 C 1.34775 * 120.00060 * 94.96212 * 3 2 1 14 14 O 1.21568 * 120.00059 * 185.55117 * 13 3 2 15 15 C 1.47710 * 120.00074 * 5.55460 * 13 3 2 16 16 C 1.39010 * 120.27546 * 55.05269 * 15 13 3 17 17 C 1.40512 * 117.98775 * 179.72619 * 16 15 13 18 18 C 1.40542 * 121.20056 * 180.27385 * 17 16 15 19 19 C 1.36140 * 119.62353 * 180.02562 * 18 17 16 20 20 C 1.39336 * 120.83643 * 359.91355 * 19 18 17 21 21 C 1.36142 * 121.09065 * 0.06595 * 20 19 18 22 22 C 1.40531 * 119.81251 * 359.97438 * 21 20 19 23 23 N 1.33805 * 120.80324 * 180.02562 * 22 21 20 24 24 C 1.30954 * 121.70949 * 179.97438 * 23 22 21 25 25 Cl 1.73596 * 119.25864 * 179.97438 * 24 23 22 26 26 H 1.08998 * 109.47190 * 300.00464 * 1 2 3 27 27 H 1.09004 * 109.46893 * 60.00272 * 1 2 3 28 28 H 1.08998 * 109.47078 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47190 * 239.99536 * 2 1 3 30 30 H 1.09004 * 109.46893 * 119.99728 * 2 1 3 31 31 H 1.08993 * 109.46962 * 29.99920 * 4 3 2 32 32 H 1.09000 * 109.46600 * 150.00295 * 4 3 2 33 33 H 0.96999 * 119.99279 * 179.97438 * 8 7 5 34 34 H 1.07997 * 121.00757 * 0.02562 * 16 15 13 35 35 H 1.07997 * 120.18849 * 359.95544 * 18 17 16 36 36 H 1.07995 * 119.58417 * 179.97438 * 19 18 17 37 37 H 1.08002 * 119.46014 * 180.02562 * 20 19 18 38 38 H 1.07999 * 120.09284 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.1590 2.1084 -1.2640 5 6 3.5418 1.8859 -1.8204 6 1 4.2453 1.2647 -1.2860 7 6 3.9087 2.4755 -3.0115 8 7 5.1157 2.2817 -3.4967 9 14 2.6916 3.5494 -3.9360 10 1 2.8299 4.9569 -3.4832 11 1 2.9674 3.4688 -5.3930 12 1 1.3100 3.0764 -3.6668 13 6 2.3382 1.9830 1.1628 14 8 2.6465 3.1588 1.1741 15 6 2.3141 1.2137 2.4235 16 6 3.0514 0.0413 2.5433 17 6 2.9982 -0.6491 3.7660 18 6 3.7213 -1.8380 3.9628 19 6 3.6459 -2.4810 5.1604 20 6 2.8620 -1.9745 6.1950 21 6 2.1491 -0.8252 6.0389 22 6 2.1996 -0.1321 4.8174 23 7 1.5073 0.9994 4.6426 24 6 1.5418 1.6598 3.5122 25 17 0.6178 3.1210 3.3547 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 1.8934 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 1.4180 1.7455 -1.9763 32 1 2.0045 3.1732 -1.0897 33 1 5.3736 2.6962 -4.3348 34 1 3.6508 -0.3252 1.7231 35 1 4.3323 -2.2399 3.1682 36 1 4.2015 -3.3948 5.3108 37 1 2.8188 -2.5025 7.1361 38 1 1.5464 -0.4473 6.8515 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001348559129.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:14:30 Heat of formation + Delta-G solvation = 1.717896 kcal Electronic energy + Delta-G solvation = -23972.581122 eV Core-core repulsion = 20419.352960 eV Total energy + Delta-G solvation = -3553.228162 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.088 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -42.21577 -40.63536 -38.42826 -37.37276 -37.10249 -35.12009 -34.54281 -32.07691 -31.69806 -31.17304 -29.52697 -26.11403 -25.39275 -24.47374 -23.89997 -23.18815 -20.81974 -19.49667 -19.09006 -18.65768 -18.29492 -17.55885 -16.92887 -16.38404 -16.06799 -15.83118 -15.64653 -15.19733 -14.96893 -14.90327 -14.70700 -14.43812 -14.32545 -13.83586 -13.69655 -13.45805 -13.22981 -12.86684 -12.63380 -12.55796 -12.46603 -12.35781 -12.21488 -12.11606 -12.01998 -11.73716 -11.58500 -11.23276 -10.82242 -10.66861 -9.85951 -9.52786 -9.31487 -8.33628 -6.38322 -0.91827 -0.62375 0.56568 0.77922 1.33446 1.37699 1.42324 1.45197 1.82348 2.09095 2.31343 2.88349 3.00699 3.10937 3.32993 3.41874 3.54573 3.84136 3.92155 4.02642 4.22556 4.29426 4.31044 4.50375 4.54083 4.57527 4.71603 4.78736 4.86850 4.89480 4.94994 5.00070 5.21801 5.27982 5.33315 5.43686 5.44664 5.55502 5.78604 6.22160 6.39161 6.51947 6.62544 7.12416 7.28524 8.82677 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.016985 B = 0.004181 C = 0.003729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1648.155836 B = 6696.104058 C = 7507.552710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.092 3.908 3 N -0.586 5.586 4 C 0.226 3.774 5 C -0.535 4.535 6 H 0.037 0.963 7 C 0.018 3.982 8 N -0.941 5.941 9 Si 0.939 3.061 10 H -0.278 1.278 11 H -0.274 1.274 12 H -0.239 1.239 13 C 0.554 3.446 14 O -0.565 6.565 15 C -0.178 4.178 16 C 0.000 4.000 17 C -0.114 4.114 18 C -0.091 4.091 19 C -0.103 4.103 20 C -0.069 4.069 21 C -0.113 4.113 22 C 0.130 3.870 23 N -0.480 5.480 24 C 0.227 3.773 25 Cl -0.023 7.023 26 H 0.044 0.956 27 H 0.055 0.945 28 H 0.095 0.905 29 H 0.087 0.913 30 H 0.090 0.910 31 H 0.053 0.947 32 H 0.021 0.979 33 H 0.268 0.732 34 H 0.167 0.833 35 H 0.158 0.842 36 H 0.170 0.830 37 H 0.172 0.828 38 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.226 -14.666 18.166 24.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.030 4.030 3 N -0.316 5.316 4 C 0.104 3.896 5 C -0.573 4.573 6 H 0.055 0.945 7 C -0.181 4.181 8 N -0.581 5.581 9 Si 0.762 3.238 10 H -0.204 1.204 11 H -0.200 1.200 12 H -0.162 1.162 13 C 0.341 3.659 14 O -0.445 6.445 15 C -0.184 4.184 16 C -0.026 4.026 17 C -0.116 4.116 18 C -0.110 4.110 19 C -0.120 4.120 20 C -0.089 4.089 21 C -0.132 4.132 22 C 0.009 3.991 23 N -0.191 5.191 24 C 0.047 3.953 25 Cl 0.006 6.994 26 H 0.063 0.937 27 H 0.074 0.926 28 H 0.114 0.886 29 H 0.105 0.895 30 H 0.108 0.892 31 H 0.071 0.929 32 H 0.039 0.961 33 H 0.078 0.922 34 H 0.184 0.816 35 H 0.176 0.824 36 H 0.188 0.812 37 H 0.190 0.810 38 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -8.544 -13.658 18.734 24.708 hybrid contribution 0.341 1.087 -1.545 1.920 sum -8.203 -12.571 17.189 22.820 Atomic orbital electron populations 1.22125 0.94441 1.03598 1.01698 1.21959 0.95594 0.81345 1.04135 1.47909 1.62688 1.15240 1.05759 1.19386 0.95917 0.92683 0.81616 1.21503 0.98412 1.30959 1.06463 0.94467 1.25722 0.97029 0.97225 0.98115 1.70028 1.20692 1.45885 1.21512 0.85837 0.80752 0.79211 0.77952 1.20395 1.19955 1.16211 1.18227 0.77476 0.86412 0.83785 1.90752 1.49444 1.17331 1.86928 1.20471 1.03974 0.98917 0.95081 1.22161 0.93009 0.89692 0.97742 1.18985 1.00606 0.98619 0.93344 1.21403 0.97448 0.92149 0.99981 1.21487 0.97821 1.00866 0.91876 1.21496 0.92868 0.93782 1.00745 1.21046 1.01454 0.95908 0.94774 1.19272 0.93545 0.90502 0.95790 1.67282 1.22128 1.08185 1.21510 1.21623 0.93408 0.90411 0.89856 1.98421 1.71519 1.32341 1.97137 0.93713 0.92629 0.88606 0.89476 0.89169 0.92926 0.96128 0.92248 0.81566 0.82427 0.81243 0.81047 0.83413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.09 10.24 71.98 0.74 -3.35 16 2 C 0.09 2.79 5.97 86.38 0.52 3.31 16 3 N -0.59 -24.24 2.46 -829.70 -2.04 -26.28 16 4 C 0.23 10.94 4.29 85.63 0.37 11.31 16 5 C -0.53 -30.69 9.94 25.60 0.25 -30.43 16 6 H 0.04 2.35 8.06 -2.91 -0.02 2.32 16 7 C 0.02 1.03 5.47 84.65 0.46 1.49 16 8 N -0.94 -58.35 13.96 21.45 0.30 -58.05 16 9 Si 0.94 44.06 27.47 68.60 1.88 45.95 16 10 H -0.28 -13.26 7.11 99.48 0.71 -12.55 16 11 H -0.27 -12.33 7.11 99.48 0.71 -11.63 16 12 H -0.24 -10.10 6.54 99.48 0.65 -9.45 16 13 C 0.55 23.99 6.52 86.75 0.57 24.56 16 14 O -0.57 -29.37 15.75 -3.93 -0.06 -29.43 16 15 C -0.18 -6.24 4.92 -19.98 -0.10 -6.34 16 16 C 0.00 0.00 7.36 23.01 0.17 0.17 16 17 C -0.11 -2.61 5.74 -21.28 -0.12 -2.74 16 18 C -0.09 -1.35 9.77 22.34 0.22 -1.14 16 19 C -0.10 -0.99 9.96 22.05 0.22 -0.77 16 20 C -0.07 -0.70 9.94 22.05 0.22 -0.48 16 21 C -0.11 -1.94 9.97 22.34 0.22 -1.72 16 22 C 0.13 3.26 6.61 40.28 0.27 3.53 16 23 N -0.48 -14.77 10.27 -178.59 -1.83 -16.60 16 24 C 0.23 7.78 7.30 85.44 0.62 8.41 16 25 Cl -0.02 -0.80 27.50 -2.72 -0.07 -0.87 16 26 H 0.04 1.20 8.14 -2.39 -0.02 1.18 16 27 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 28 H 0.10 1.80 8.14 -2.39 -0.02 1.78 16 29 H 0.09 2.66 8.11 -2.39 -0.02 2.64 16 30 H 0.09 2.35 4.43 -2.39 -0.01 2.34 16 31 H 0.05 2.34 7.13 -2.39 -0.02 2.32 16 32 H 0.02 1.08 6.78 -2.39 -0.02 1.07 16 33 H 0.27 15.52 8.31 -92.71 -0.77 14.75 16 34 H 0.17 4.22 7.60 -2.91 -0.02 4.20 16 35 H 0.16 1.66 8.06 -2.91 -0.02 1.64 16 36 H 0.17 0.44 8.06 -2.91 -0.02 0.42 16 37 H 0.17 0.46 8.06 -2.91 -0.02 0.43 16 38 H 0.15 2.18 8.06 -2.91 -0.02 2.15 16 Total: -1.00 -78.22 339.22 3.83 -74.40 By element: Atomic # 1 Polarization: 4.06 SS G_CDS: 1.03 Total: 5.09 kcal Atomic # 6 Polarization: 1.18 SS G_CDS: 4.62 Total: 5.80 kcal Atomic # 7 Polarization: -97.36 SS G_CDS: -3.57 Total: -100.93 kcal Atomic # 8 Polarization: -29.37 SS G_CDS: -0.06 Total: -29.43 kcal Atomic # 14 Polarization: 44.06 SS G_CDS: 1.88 Total: 45.95 kcal Atomic # 17 Polarization: -0.80 SS G_CDS: -0.07 Total: -0.87 kcal Total: -78.22 3.83 -74.40 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001348559129.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.114 kcal (2) G-P(sol) polarization free energy of solvation -78.225 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.829 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.396 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.718 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds