Wall clock time and date at job start Tue Mar 31 2020 12:29:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46508 * 120.00048 * 2 1 4 4 C 1.50697 * 109.46884 * 89.99923 * 3 2 1 5 5 H 1.07996 * 120.00508 * 0.02562 * 4 3 2 6 6 C 1.37878 * 119.99798 * 179.97438 * 4 3 2 7 7 N 1.31515 * 120.00338 * 179.97438 * 6 4 3 8 8 Si 1.86803 * 120.00011 * 0.02562 * 6 4 3 9 9 H 1.48502 * 109.47178 * 89.99623 * 8 6 4 10 10 H 1.48502 * 109.46991 * 209.99728 * 8 6 4 11 11 H 1.48490 * 109.47131 * 329.99761 * 8 6 4 12 12 C 1.34775 * 120.00307 * 179.97438 * 2 1 3 13 13 O 1.21731 * 120.00218 * 185.26283 * 12 2 1 14 14 C 1.46482 * 119.99330 * 5.26872 * 12 2 1 15 15 N 1.33618 * 122.82663 * 6.30746 * 14 12 2 16 16 C 1.28439 * 117.34567 * 179.97438 * 15 14 12 17 17 S 1.75987 * 110.14076 * 0.02562 * 16 15 14 18 18 C 1.37567 * 122.81924 * 186.00892 * 14 12 2 19 19 N 1.38214 * 126.04743 * 0.04412 * 18 14 12 20 20 C 1.39759 * 120.00042 * 186.61245 * 19 18 14 21 21 C 1.39338 * 120.49011 * 36.35194 * 20 19 18 22 22 C 1.38494 * 118.35211 * 180.02562 * 21 20 19 23 23 C 1.38278 * 119.24179 * 0.02562 * 22 21 20 24 24 N 1.31866 * 120.93242 * 0.02562 * 23 22 21 25 25 C 1.31811 * 121.80015 * 359.65665 * 24 23 22 26 26 H 1.09002 * 109.47140 * 96.00186 * 1 2 3 27 27 H 1.08995 * 109.47118 * 216.00719 * 1 2 3 28 28 H 1.09002 * 109.46785 * 336.01093 * 1 2 3 29 29 H 1.08994 * 109.47004 * 209.99970 * 3 2 1 30 30 H 1.09003 * 109.47020 * 329.99886 * 3 2 1 31 31 H 0.97001 * 120.00520 * 180.02562 * 7 6 4 32 32 H 1.08000 * 124.92817 * 179.97438 * 16 15 14 33 33 H 0.96998 * 119.99813 * 6.60950 * 19 18 14 34 34 H 1.07996 * 120.82187 * 359.97438 * 21 20 19 35 35 H 1.08001 * 120.37423 * 180.02562 * 22 21 20 36 36 H 1.08004 * 119.53424 * 179.97438 * 23 22 21 37 37 H 1.07994 * 119.67052 * 180.33602 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4487 1.7038 1.4208 5 1 2.0981 1.0958 2.2417 6 6 3.1269 2.8775 1.6728 7 7 3.3457 3.2574 2.9127 8 14 3.7339 3.9287 0.2529 9 1 2.6824 4.9077 -0.1230 10 1 4.9621 4.6550 0.6645 11 1 4.0396 3.0593 -0.9113 12 6 2.1389 -1.1671 0.0005 13 8 3.3524 -1.1693 0.0972 14 6 1.4111 -2.4330 -0.1154 15 7 0.0965 -2.4942 -0.3471 16 6 -0.4343 -3.6608 -0.4297 17 16 0.7918 -4.9022 -0.2005 18 6 2.0245 -3.6590 -0.0009 19 7 3.3692 -3.8770 0.2329 20 6 3.8846 -5.1753 0.1896 21 6 3.3980 -6.0987 -0.7335 22 6 3.9401 -7.3731 -0.7373 23 6 4.9379 -7.6854 0.1678 24 7 5.3760 -6.7888 1.0297 25 6 4.8922 -5.5632 1.0634 26 1 -0.3633 -0.1075 -1.0220 27 1 -0.3633 -0.8313 0.6041 28 1 -0.3633 0.9389 0.4178 29 1 3.1499 1.1384 -0.5138 30 1 1.6084 2.0284 -0.5139 31 1 3.8225 4.0833 3.0900 32 1 -1.4814 -3.8521 -0.6124 33 1 3.9552 -3.1288 0.4271 34 1 2.6169 -5.8275 -1.4282 35 1 3.5876 -8.1144 -1.4391 36 1 5.3637 -8.6779 0.1692 37 1 5.2802 -4.8548 1.7803 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001361928148.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:29:36 Heat of formation + Delta-G solvation = 71.831860 kcal Electronic energy + Delta-G solvation = -23524.441343 eV Core-core repulsion = 20008.590009 eV Total energy + Delta-G solvation = -3515.851335 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.089 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.75285 -40.04488 -37.92213 -36.75212 -34.86506 -32.50305 -32.45843 -30.99800 -29.14313 -28.07848 -25.85188 -25.25220 -24.02934 -23.03256 -22.83953 -21.06313 -19.23806 -18.65640 -17.41081 -17.09378 -16.93055 -16.54241 -16.15470 -15.61632 -15.22685 -15.12406 -14.38847 -14.36673 -14.29527 -14.10157 -13.49614 -13.31646 -13.07616 -12.62611 -12.35303 -12.31988 -12.11560 -11.96230 -11.73290 -11.49605 -10.93040 -10.52494 -10.25523 -10.10550 -9.90467 -9.64069 -9.54483 -9.43836 -9.21703 -9.06190 -8.58494 -7.84981 -7.50290 -6.07606 -4.06298 0.32859 0.76307 0.85011 1.16501 1.51644 2.27621 2.86567 3.27765 3.35578 3.39646 3.48484 3.81315 3.91206 4.24158 4.32247 4.40412 4.46222 4.50040 4.71229 4.94925 4.98899 5.16821 5.26551 5.34015 5.66041 5.74207 5.80861 6.00513 6.12203 6.19707 6.52614 6.64066 6.71828 6.94514 7.12288 7.35951 7.57060 7.61552 7.65840 8.24880 8.46829 8.86918 8.97325 9.52255 11.05790 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.016529 B = 0.003746 C = 0.003212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1693.557923 B = 7472.208640 C = 8715.907892 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.095 3.905 2 N -0.576 5.576 3 C 0.216 3.784 4 C -0.527 4.527 5 H 0.074 0.926 6 C 0.072 3.928 7 N -0.897 5.897 8 Si 0.875 3.125 9 H -0.275 1.275 10 H -0.284 1.284 11 H -0.264 1.264 12 C 0.589 3.411 13 O -0.554 6.554 14 C -0.082 4.082 15 N -0.395 5.395 16 C 0.011 3.989 17 S 0.066 5.934 18 C 0.141 3.859 19 N -0.610 5.610 20 C 0.107 3.893 21 C -0.118 4.118 22 C -0.137 4.137 23 C 0.072 3.928 24 N -0.456 5.456 25 C 0.081 3.919 26 H 0.047 0.953 27 H 0.077 0.923 28 H 0.065 0.935 29 H 0.040 0.960 30 H 0.028 0.972 31 H 0.264 0.736 32 H 0.206 0.794 33 H 0.440 0.560 34 H 0.142 0.858 35 H 0.141 0.859 36 H 0.159 0.841 37 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.721 -22.225 -9.309 24.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 N -0.304 5.304 3 C 0.095 3.905 4 C -0.565 4.565 5 H 0.093 0.907 6 C -0.130 4.130 7 N -0.536 5.536 8 Si 0.702 3.298 9 H -0.201 1.201 10 H -0.209 1.209 11 H -0.189 1.189 12 C 0.375 3.625 13 O -0.434 6.434 14 C -0.216 4.216 15 N -0.106 5.106 16 C -0.292 4.292 17 S 0.312 5.688 18 C -0.087 4.087 19 N -0.239 5.239 20 C 0.008 3.992 21 C -0.148 4.148 22 C -0.157 4.157 23 C -0.086 4.086 24 N -0.164 5.164 25 C -0.080 4.080 26 H 0.066 0.934 27 H 0.096 0.904 28 H 0.083 0.917 29 H 0.058 0.942 30 H 0.046 0.954 31 H 0.074 0.926 32 H 0.223 0.777 33 H 0.288 0.712 34 H 0.160 0.840 35 H 0.159 0.841 36 H 0.176 0.824 37 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -4.690 -22.857 -8.608 24.870 hybrid contribution 0.089 1.956 -1.025 2.210 sum -4.600 -20.901 -9.634 23.469 Atomic orbital electron populations 1.21857 0.79549 1.02426 1.01028 1.47584 1.07167 1.06255 1.69397 1.19735 0.92392 0.79828 0.98513 1.21310 1.36864 1.07172 0.91165 0.90741 1.24853 0.95258 0.97312 0.95572 1.69896 1.41552 1.23501 1.18648 0.86863 0.78910 0.80829 0.83246 1.20051 1.20934 1.18882 1.16722 0.86090 0.81995 0.77697 1.90641 1.13332 1.86222 1.53250 1.20431 0.89160 0.93361 1.18668 1.66722 1.08787 1.24311 1.10813 1.28789 1.03208 0.88120 1.09110 1.85095 1.00280 1.10656 1.72816 1.23773 0.89141 0.95893 0.99928 1.41634 1.04574 1.07481 1.70248 1.19019 0.98092 0.85597 0.96538 1.21587 1.01869 0.94065 0.97245 1.22006 0.97272 0.96277 1.00171 1.22774 0.94622 0.99032 0.92186 1.67699 1.25782 1.01386 1.21528 1.22732 0.95147 0.93607 0.96470 0.93438 0.90427 0.91663 0.94184 0.95391 0.92568 0.77730 0.71172 0.84034 0.84121 0.82360 0.81970 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.70 9.17 59.85 0.55 2.25 16 2 N -0.58 -12.74 2.86 -184.58 -0.53 -13.26 16 3 C 0.22 5.43 4.16 -5.19 -0.02 5.41 16 4 C -0.53 -15.41 9.94 -34.44 -0.34 -15.75 16 5 H 0.07 2.40 8.06 -52.49 -0.42 1.98 16 6 C 0.07 2.13 5.47 -17.82 -0.10 2.03 16 7 N -0.90 -27.92 13.96 55.43 0.77 -27.14 16 8 Si 0.87 21.68 27.47 -169.99 -4.67 17.02 16 9 H -0.27 -6.55 7.11 56.52 0.40 -6.14 16 10 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 11 H -0.26 -6.38 6.54 56.52 0.37 -6.02 16 12 C 0.59 12.74 7.61 -12.94 -0.10 12.65 16 13 O -0.55 -13.26 14.17 5.16 0.07 -13.18 16 14 C -0.08 -1.41 6.48 -84.01 -0.54 -1.95 16 15 N -0.39 -5.74 6.76 -10.78 -0.07 -5.81 16 16 C 0.01 0.11 12.44 51.34 0.64 0.75 16 17 S 0.07 0.68 19.90 -107.50 -2.14 -1.46 16 18 C 0.14 2.07 6.96 -14.92 -0.10 1.97 16 19 N -0.61 -8.77 5.38 -8.67 -0.05 -8.82 16 20 C 0.11 1.29 6.25 -83.59 -0.52 0.77 16 21 C -0.12 -1.18 8.35 -39.08 -0.33 -1.50 16 22 C -0.14 -1.08 10.10 -39.47 -0.40 -1.48 16 23 C 0.07 0.63 11.18 -17.52 -0.20 0.43 16 24 N -0.46 -5.26 10.35 -13.07 -0.14 -5.40 16 25 C 0.08 0.97 11.13 -17.32 -0.19 0.77 16 26 H 0.05 0.75 8.04 -51.93 -0.42 0.33 16 27 H 0.08 1.32 5.87 -51.93 -0.30 1.02 16 28 H 0.06 1.17 8.03 -51.93 -0.42 0.75 16 29 H 0.04 1.06 6.56 -51.93 -0.34 0.72 16 30 H 0.03 0.66 7.50 -51.93 -0.39 0.27 16 31 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 32 H 0.21 1.26 8.06 -52.49 -0.42 0.84 16 33 H 0.44 7.14 6.50 -40.82 -0.27 6.88 16 34 H 0.14 1.31 6.09 -52.29 -0.32 0.99 16 35 H 0.14 0.66 8.06 -52.49 -0.42 0.24 16 36 H 0.16 0.91 8.06 -52.48 -0.42 0.49 16 37 H 0.16 1.78 8.06 -52.49 -0.42 1.35 16 LS Contribution 328.02 15.07 4.94 4.94 Total: -1.00 -35.12 328.02 -7.19 -42.31 By element: Atomic # 1 Polarization: 8.18 SS G_CDS: -3.73 Total: 4.45 kcal Atomic # 6 Polarization: 8.01 SS G_CDS: -1.66 Total: 6.35 kcal Atomic # 7 Polarization: -60.42 SS G_CDS: -0.01 Total: -60.43 kcal Atomic # 8 Polarization: -13.26 SS G_CDS: 0.07 Total: -13.18 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -4.67 Total: 17.02 kcal Atomic # 16 Polarization: 0.68 SS G_CDS: -2.14 Total: -1.46 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -35.12 -7.19 -42.31 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361928148.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.146 kcal (2) G-P(sol) polarization free energy of solvation -35.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.314 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds