Wall clock time and date at job start Tue Mar 31 2020 12:29:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46508 * 120.00048 * 2 1 4 4 C 1.50697 * 109.46884 * 89.99923 * 3 2 1 5 5 H 1.07996 * 120.00508 * 0.02562 * 4 3 2 6 6 C 1.37878 * 119.99798 * 179.97438 * 4 3 2 7 7 N 1.31515 * 120.00338 * 179.97438 * 6 4 3 8 8 Si 1.86803 * 120.00011 * 0.02562 * 6 4 3 9 9 H 1.48502 * 109.47178 * 89.99623 * 8 6 4 10 10 H 1.48502 * 109.46991 * 209.99728 * 8 6 4 11 11 H 1.48490 * 109.47131 * 329.99761 * 8 6 4 12 12 C 1.34775 * 120.00307 * 179.97438 * 2 1 3 13 13 O 1.21731 * 120.00218 * 185.26283 * 12 2 1 14 14 C 1.46482 * 119.99330 * 5.26872 * 12 2 1 15 15 N 1.33618 * 122.82663 * 6.30746 * 14 12 2 16 16 C 1.28439 * 117.34567 * 179.97438 * 15 14 12 17 17 S 1.75987 * 110.14076 * 0.02562 * 16 15 14 18 18 C 1.37567 * 122.81924 * 186.00892 * 14 12 2 19 19 N 1.38214 * 126.04743 * 0.04412 * 18 14 12 20 20 C 1.39759 * 120.00042 * 186.61245 * 19 18 14 21 21 C 1.39338 * 120.49011 * 36.35194 * 20 19 18 22 22 C 1.38494 * 118.35211 * 180.02562 * 21 20 19 23 23 C 1.38278 * 119.24179 * 0.02562 * 22 21 20 24 24 N 1.31866 * 120.93242 * 0.02562 * 23 22 21 25 25 C 1.31811 * 121.80015 * 359.65665 * 24 23 22 26 26 H 1.09002 * 109.47140 * 96.00186 * 1 2 3 27 27 H 1.08995 * 109.47118 * 216.00719 * 1 2 3 28 28 H 1.09002 * 109.46785 * 336.01093 * 1 2 3 29 29 H 1.08994 * 109.47004 * 209.99970 * 3 2 1 30 30 H 1.09003 * 109.47020 * 329.99886 * 3 2 1 31 31 H 0.97001 * 120.00520 * 180.02562 * 7 6 4 32 32 H 1.08000 * 124.92817 * 179.97438 * 16 15 14 33 33 H 0.96998 * 119.99813 * 6.60950 * 19 18 14 34 34 H 1.07996 * 120.82187 * 359.97438 * 21 20 19 35 35 H 1.08001 * 120.37423 * 180.02562 * 22 21 20 36 36 H 1.08004 * 119.53424 * 179.97438 * 23 22 21 37 37 H 1.07994 * 119.67052 * 180.33602 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4487 1.7038 1.4208 5 1 2.0981 1.0958 2.2417 6 6 3.1269 2.8775 1.6728 7 7 3.3457 3.2574 2.9127 8 14 3.7339 3.9287 0.2529 9 1 2.6824 4.9077 -0.1230 10 1 4.9621 4.6550 0.6645 11 1 4.0396 3.0593 -0.9113 12 6 2.1389 -1.1671 0.0005 13 8 3.3524 -1.1693 0.0972 14 6 1.4111 -2.4330 -0.1154 15 7 0.0965 -2.4942 -0.3471 16 6 -0.4343 -3.6608 -0.4297 17 16 0.7918 -4.9022 -0.2005 18 6 2.0245 -3.6590 -0.0009 19 7 3.3692 -3.8770 0.2329 20 6 3.8846 -5.1753 0.1896 21 6 3.3980 -6.0987 -0.7335 22 6 3.9401 -7.3731 -0.7373 23 6 4.9379 -7.6854 0.1678 24 7 5.3760 -6.7888 1.0297 25 6 4.8922 -5.5632 1.0634 26 1 -0.3633 -0.1075 -1.0220 27 1 -0.3633 -0.8313 0.6041 28 1 -0.3633 0.9389 0.4178 29 1 3.1499 1.1384 -0.5138 30 1 1.6084 2.0284 -0.5139 31 1 3.8225 4.0833 3.0900 32 1 -1.4814 -3.8521 -0.6124 33 1 3.9552 -3.1288 0.4271 34 1 2.6169 -5.8275 -1.4282 35 1 3.5876 -8.1144 -1.4391 36 1 5.3637 -8.6779 0.1692 37 1 5.2802 -4.8548 1.7803 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001361928148.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:29:35 Heat of formation + Delta-G solvation = 46.100853 kcal Electronic energy + Delta-G solvation = -23525.557124 eV Core-core repulsion = 20008.590009 eV Total energy + Delta-G solvation = -3516.967115 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.089 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.73617 -41.16442 -39.32381 -37.76079 -36.55312 -34.68604 -33.23596 -31.93835 -30.86399 -29.36749 -27.35320 -26.47783 -24.84627 -24.57452 -23.79669 -22.48683 -20.47172 -19.71989 -19.17048 -18.35008 -18.19193 -17.63210 -17.15017 -16.82611 -16.71911 -16.57566 -16.01272 -15.34913 -15.16104 -15.04924 -14.84628 -14.75821 -14.32521 -14.15062 -13.79922 -13.73897 -13.46757 -13.19783 -12.99553 -12.96109 -12.71703 -12.40565 -12.05307 -11.79160 -11.15303 -10.94948 -10.84239 -10.69569 -10.39683 -10.32023 -9.98340 -9.46552 -8.65847 -8.36019 -6.41786 -0.61013 -0.19727 0.06522 0.29707 0.62838 1.10738 1.30753 1.34911 1.46081 1.88178 2.29093 2.30282 2.44012 2.71627 2.97426 3.26621 3.49870 3.67856 3.73192 3.85903 4.00213 4.07528 4.31779 4.52394 4.64694 4.66054 4.75916 4.86629 4.91063 4.95526 5.03112 5.16702 5.36453 5.41796 5.60077 5.79163 5.98794 6.20105 6.51222 6.58645 6.69367 6.88326 7.16187 7.31035 8.81223 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.016529 B = 0.003746 C = 0.003212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1693.557923 B = 7472.208640 C = 8715.907892 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.100 3.900 2 N -0.592 5.592 3 C 0.226 3.774 4 C -0.536 4.536 5 H 0.023 0.977 6 C 0.012 3.988 7 N -0.945 5.945 8 Si 0.951 3.049 9 H -0.250 1.250 10 H -0.279 1.279 11 H -0.256 1.256 12 C 0.576 3.424 13 O -0.595 6.595 14 C -0.118 4.118 15 N -0.423 5.423 16 C 0.031 3.969 17 S 0.146 5.854 18 C 0.126 3.874 19 N -0.620 5.620 20 C 0.085 3.915 21 C -0.120 4.120 22 C -0.120 4.120 23 C 0.073 3.927 24 N -0.480 5.480 25 C 0.064 3.936 26 H 0.072 0.928 27 H 0.086 0.914 28 H 0.057 0.943 29 H 0.023 0.977 30 H 0.050 0.950 31 H 0.269 0.731 32 H 0.254 0.746 33 H 0.426 0.574 34 H 0.152 0.848 35 H 0.184 0.816 36 H 0.193 0.807 37 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.434 -25.050 -12.022 28.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.042 4.042 2 N -0.320 5.320 3 C 0.104 3.896 4 C -0.575 4.575 5 H 0.042 0.958 6 C -0.186 4.186 7 N -0.585 5.585 8 Si 0.774 3.226 9 H -0.174 1.174 10 H -0.205 1.205 11 H -0.180 1.180 12 C 0.365 3.635 13 O -0.479 6.479 14 C -0.251 4.251 15 N -0.135 5.135 16 C -0.273 4.273 17 S 0.391 5.609 18 C -0.104 4.104 19 N -0.246 5.246 20 C -0.013 4.013 21 C -0.149 4.149 22 C -0.140 4.140 23 C -0.085 4.085 24 N -0.188 5.188 25 C -0.096 4.096 26 H 0.090 0.910 27 H 0.104 0.896 28 H 0.076 0.924 29 H 0.041 0.959 30 H 0.068 0.932 31 H 0.078 0.922 32 H 0.270 0.730 33 H 0.270 0.730 34 H 0.169 0.831 35 H 0.202 0.798 36 H 0.210 0.790 37 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -6.437 -25.722 -11.322 28.831 hybrid contribution 0.603 2.511 -0.121 2.585 sum -5.834 -23.211 -11.443 26.528 Atomic orbital electron populations 1.21978 0.77163 1.02398 1.02672 1.47689 1.08715 1.05522 1.70063 1.19399 0.92605 0.82039 0.95570 1.21491 1.37031 1.06875 0.92094 0.95828 1.25875 0.95138 0.98810 0.98812 1.70054 1.42665 1.24446 1.21338 0.85661 0.78859 0.78928 0.79200 1.17443 1.20471 1.17962 1.17447 0.86078 0.83417 0.76550 1.90594 1.15193 1.87200 1.54870 1.19822 0.90591 0.91958 1.22684 1.66615 1.07473 1.26425 1.12985 1.29693 1.05076 0.87218 1.05308 1.84804 0.97094 1.07657 1.71310 1.24178 0.89994 0.97413 0.98854 1.41702 1.04684 1.08021 1.70181 1.19180 0.99030 0.85118 0.97976 1.21815 1.02044 0.94431 0.96655 1.22453 0.95774 0.95937 0.99802 1.23465 0.94229 0.99728 0.91053 1.67720 1.26663 1.01495 1.22971 1.22672 0.95783 0.94119 0.97005 0.90982 0.89558 0.92379 0.95883 0.93222 0.92168 0.73006 0.72971 0.83110 0.79831 0.78980 0.82909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 3.60 9.17 127.77 1.17 4.77 16 2 N -0.59 -27.21 2.86 -856.08 -2.45 -29.65 16 3 C 0.23 11.74 4.16 85.63 0.36 12.09 16 4 C -0.54 -33.08 9.94 25.60 0.25 -32.83 16 5 H 0.02 1.64 8.06 -2.91 -0.02 1.61 16 6 C 0.01 0.71 5.47 84.65 0.46 1.17 16 7 N -0.95 -61.18 13.96 21.45 0.30 -60.88 16 8 Si 0.95 45.52 27.47 68.60 1.88 47.40 16 9 H -0.25 -10.96 7.11 99.48 0.71 -10.26 16 10 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 11 H -0.26 -11.80 6.54 99.48 0.65 -11.15 16 12 C 0.58 26.29 7.61 86.39 0.66 26.95 16 13 O -0.60 -30.67 14.17 -4.45 -0.06 -30.74 16 14 C -0.12 -4.11 6.48 40.86 0.26 -3.85 16 15 N -0.42 -11.68 6.76 -188.03 -1.27 -12.95 16 16 C 0.03 0.53 12.44 130.74 1.63 2.16 16 17 S 0.15 2.53 19.90 -56.49 -1.12 1.41 16 18 C 0.13 3.68 6.96 83.53 0.58 4.26 16 19 N -0.62 -18.67 5.38 -181.36 -0.98 -19.65 16 20 C 0.09 2.06 6.25 38.30 0.24 2.30 16 21 C -0.12 -2.11 8.35 22.60 0.19 -1.92 16 22 C -0.12 -1.42 10.10 22.34 0.23 -1.19 16 23 C 0.07 1.07 11.18 84.70 0.95 2.02 16 24 N -0.48 -10.71 10.35 -195.28 -2.02 -12.73 16 25 C 0.06 1.57 11.13 84.85 0.94 2.51 16 26 H 0.07 2.21 8.04 -2.39 -0.02 2.19 16 27 H 0.09 2.95 5.87 -2.39 -0.01 2.93 16 28 H 0.06 2.11 8.03 -2.39 -0.02 2.09 16 29 H 0.02 1.27 6.56 -2.39 -0.02 1.25 16 30 H 0.05 2.34 7.50 -2.39 -0.02 2.32 16 31 H 0.27 16.11 8.31 -92.71 -0.77 15.34 16 32 H 0.25 1.67 8.06 -2.91 -0.02 1.64 16 33 H 0.43 15.23 6.50 -92.71 -0.60 14.62 16 34 H 0.15 2.32 6.09 -3.04 -0.02 2.30 16 35 H 0.18 0.61 8.06 -2.91 -0.02 0.59 16 36 H 0.19 1.39 8.06 -2.91 -0.02 1.36 16 37 H 0.15 3.79 8.06 -2.91 -0.02 3.77 16 Total: -1.00 -83.77 328.02 2.67 -81.10 By element: Atomic # 1 Polarization: 17.78 SS G_CDS: 0.47 Total: 18.25 kcal Atomic # 6 Polarization: 10.53 SS G_CDS: 7.92 Total: 18.45 kcal Atomic # 7 Polarization: -129.45 SS G_CDS: -6.42 Total: -135.87 kcal Atomic # 8 Polarization: -30.67 SS G_CDS: -0.06 Total: -30.74 kcal Atomic # 14 Polarization: 45.52 SS G_CDS: 1.88 Total: 47.40 kcal Atomic # 16 Polarization: 2.53 SS G_CDS: -1.12 Total: 1.41 kcal Total: -83.77 2.67 -81.10 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361928148.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.196 kcal (2) G-P(sol) polarization free energy of solvation -83.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.671 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.095 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds