Wall clock time and date at job start Tue Mar 31 2020 12:29:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46499 * 120.00333 * 2 1 4 4 C 1.50695 * 109.47291 * 270.00449 * 3 2 1 5 5 H 1.07994 * 120.00094 * 359.97438 * 4 3 2 6 6 C 1.37876 * 119.99901 * 180.02562 * 4 3 2 7 7 N 1.31519 * 119.99961 * 0.02562 * 6 4 3 8 8 Si 1.86797 * 120.00082 * 180.02562 * 6 4 3 9 9 H 1.48502 * 109.47225 * 359.97438 * 8 6 4 10 10 H 1.48505 * 109.47469 * 120.00084 * 8 6 4 11 11 H 1.48502 * 109.47497 * 239.99930 * 8 6 4 12 12 C 1.34782 * 119.99630 * 180.02562 * 2 1 3 13 13 O 1.21590 * 119.99707 * 179.97438 * 12 2 1 14 14 N 1.34773 * 119.99759 * 359.97438 * 12 2 1 15 15 C 1.39803 * 119.99548 * 184.56386 * 14 12 2 16 16 C 1.39005 * 119.92909 * 144.87021 * 15 14 12 17 17 C 1.37808 * 120.07518 * 180.02562 * 16 15 14 18 18 C 1.39602 * 119.92378 * 359.97438 * 17 16 15 19 19 C 1.47832 * 120.06838 * 179.97438 * 18 17 16 20 20 N 1.30646 * 126.22805 * 359.69402 * 19 18 17 21 21 N 1.26254 * 116.22682 * 180.26070 * 20 19 18 22 22 C 1.29344 * 117.91687 * 359.97438 * 21 20 19 23 23 S 1.71277 * 108.92348 * 359.97438 * 22 21 20 24 24 C 1.39602 * 119.86054 * 0.25362 * 18 17 16 25 25 C 1.37807 * 119.92655 * 359.53135 * 24 18 17 26 26 H 1.09007 * 109.46587 * 270.00156 * 1 2 3 27 27 H 1.09001 * 109.46622 * 29.98869 * 1 2 3 28 28 H 1.08994 * 109.47403 * 149.99777 * 1 2 3 29 29 H 1.08998 * 109.47093 * 30.00668 * 3 2 1 30 30 H 1.09003 * 109.46927 * 150.00240 * 3 2 1 31 31 H 0.97003 * 119.99735 * 180.02562 * 7 6 4 32 32 H 0.96993 * 120.00484 * 4.56338 * 14 12 2 33 33 H 1.08001 * 119.96865 * 359.97438 * 16 15 14 34 34 H 1.07994 * 120.03914 * 179.97438 * 17 16 15 35 35 H 1.07999 * 125.53777 * 179.97438 * 22 21 20 36 36 H 1.08001 * 120.03377 * 179.74759 * 24 18 17 37 37 H 1.08003 * 119.96182 * 180.21206 * 25 24 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4487 1.7038 -1.4207 5 1 2.0981 1.0959 -2.2416 6 6 3.1270 2.8774 -1.6726 7 7 3.5553 3.6169 -0.6729 8 14 3.4377 3.4172 -3.4337 9 1 2.8596 2.4173 -4.3672 10 1 2.8007 4.7384 -3.6663 11 1 4.9001 3.5247 -3.6679 12 6 2.1388 -1.1673 -0.0005 13 8 3.3548 -1.1673 -0.0010 14 7 1.4649 -2.3344 -0.0005 15 6 2.1606 -3.5432 0.0953 16 6 1.6063 -4.6089 0.7949 17 6 2.2896 -5.8016 0.8916 18 6 3.5397 -5.9392 0.2856 19 6 4.2758 -7.2171 0.3879 20 7 3.8762 -8.2902 1.0169 21 7 4.6607 -9.2789 0.9875 22 6 5.7765 -9.1478 0.3465 23 16 5.8564 -7.5688 -0.3122 24 6 4.0958 -4.8656 -0.4122 25 6 3.4053 -3.6769 -0.5090 26 1 -0.3633 0.0000 1.0278 27 1 -0.3632 0.8901 -0.5137 28 1 -0.3634 -0.8899 -0.5138 29 1 1.6086 2.0283 0.5139 30 1 3.1500 1.1382 0.5138 31 1 4.0322 4.4429 -0.8502 32 1 0.4972 -2.3357 -0.0670 33 1 0.6393 -4.5017 1.2638 34 1 1.8586 -6.6290 1.4357 35 1 6.5345 -9.9101 0.2433 36 1 5.0645 -4.9676 -0.8786 37 1 3.8334 -2.8470 -1.0516 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001365053235.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:29:45 Heat of formation + Delta-G solvation = 78.260110 kcal Electronic energy + Delta-G solvation = -22761.108021 eV Core-core repulsion = 19245.535436 eV Total energy + Delta-G solvation = -3515.572585 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.089 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.28582 -40.39207 -38.61734 -35.28084 -34.68553 -32.75549 -32.06711 -31.12076 -29.50573 -27.83908 -26.58238 -25.73660 -23.70607 -22.97254 -22.16987 -20.54093 -19.59378 -19.20477 -18.07384 -17.16939 -16.94260 -16.57704 -15.77256 -15.34008 -15.13300 -14.94885 -14.48669 -14.22514 -13.77376 -13.54344 -13.47310 -13.38711 -13.00273 -12.65333 -12.42951 -12.23295 -11.98345 -11.46620 -11.27074 -10.96233 -10.86913 -10.66246 -10.65021 -10.54173 -10.21769 -10.09717 -9.75208 -9.69200 -9.40088 -9.01051 -8.49574 -8.04332 -7.68213 -6.10221 -4.15328 -0.15304 0.63273 1.08594 1.27596 1.38687 2.44170 3.01814 3.25881 3.33862 3.37604 3.54017 3.73544 3.89945 4.29506 4.38612 4.43983 4.69188 4.80324 4.97208 5.11846 5.23958 5.24471 5.35983 5.45013 5.57482 5.76183 5.93070 6.03562 6.13300 6.27904 6.33664 6.52490 6.69525 7.02977 7.25325 7.39023 7.54599 7.86782 8.15452 8.30401 8.42758 8.84879 9.08408 9.50212 10.97730 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.021690 B = 0.002624 C = 0.002411 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1290.624349 B =10669.371049 C =11610.227954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.609 5.609 3 C 0.258 3.742 4 C -0.528 4.528 5 H 0.058 0.942 6 C 0.061 3.939 7 N -0.894 5.894 8 Si 0.899 3.101 9 H -0.274 1.274 10 H -0.283 1.283 11 H -0.282 1.282 12 C 0.696 3.304 13 O -0.565 6.565 14 N -0.695 5.695 15 C 0.211 3.789 16 C -0.160 4.160 17 C -0.043 4.043 18 C -0.074 4.074 19 C 0.083 3.917 20 N -0.266 5.266 21 N -0.262 5.262 22 C -0.045 4.045 23 S 0.127 5.873 24 C -0.067 4.067 25 C -0.122 4.122 26 H 0.047 0.953 27 H 0.080 0.920 28 H 0.050 0.950 29 H 0.036 0.964 30 H 0.046 0.954 31 H 0.263 0.737 32 H 0.405 0.595 33 H 0.133 0.867 34 H 0.137 0.863 35 H 0.213 0.787 36 H 0.127 0.873 37 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.027 -20.141 1.095 20.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.344 5.344 3 C 0.139 3.861 4 C -0.567 4.567 5 H 0.076 0.924 6 C -0.141 4.141 7 N -0.533 5.533 8 Si 0.726 3.274 9 H -0.198 1.198 10 H -0.210 1.210 11 H -0.208 1.208 12 C 0.398 3.602 13 O -0.441 6.441 14 N -0.344 5.344 15 C 0.112 3.888 16 C -0.182 4.182 17 C -0.065 4.065 18 C -0.079 4.079 19 C -0.192 4.192 20 N -0.103 5.103 21 N -0.098 5.098 22 C -0.344 4.344 23 S 0.371 5.629 24 C -0.088 4.088 25 C -0.143 4.143 26 H 0.065 0.935 27 H 0.099 0.901 28 H 0.069 0.931 29 H 0.054 0.946 30 H 0.064 0.936 31 H 0.073 0.927 32 H 0.242 0.758 33 H 0.151 0.849 34 H 0.155 0.845 35 H 0.230 0.770 36 H 0.145 0.855 37 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -1.186 -20.118 1.339 20.197 hybrid contribution -0.215 0.294 -0.984 1.049 sum -1.400 -19.824 0.355 19.877 Atomic orbital electron populations 1.21623 0.81498 1.02493 1.00576 1.47537 1.05859 1.06293 1.74749 1.19296 0.92428 0.76720 0.97634 1.21463 1.36611 1.06325 0.92275 0.92397 1.24934 0.95303 0.96371 0.97482 1.69940 1.38274 1.14368 1.30690 0.86436 0.78122 0.78318 0.84483 1.19825 1.20951 1.20838 1.15936 0.85595 0.80042 0.78602 1.90896 1.11247 1.85400 1.56555 1.43076 1.10314 1.03750 1.77300 1.17811 0.92812 0.84963 0.93224 1.20838 1.02236 0.93230 1.01849 1.20933 0.92287 0.97070 0.96245 1.17529 0.95722 0.89022 1.05669 1.28279 0.94665 0.98446 0.97789 1.71924 1.24460 0.95718 1.18236 1.70968 1.00911 1.21614 1.16266 1.30214 1.01243 1.01370 1.01590 1.84850 1.18399 1.09270 1.50407 1.21070 0.99149 0.91647 0.96943 1.21398 0.94841 0.97915 1.00116 0.93456 0.90111 0.93113 0.94637 0.93564 0.92688 0.75786 0.84934 0.84505 0.77007 0.85543 0.82695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.17 10.24 59.85 0.61 1.79 16 2 N -0.61 -12.20 2.86 -188.74 -0.54 -12.74 16 3 C 0.26 6.48 5.16 -5.20 -0.03 6.45 16 4 C -0.53 -14.43 9.39 -34.44 -0.32 -14.75 16 5 H 0.06 1.59 7.81 -52.49 -0.41 1.18 16 6 C 0.06 1.70 5.46 -17.82 -0.10 1.61 16 7 N -0.89 -25.90 13.29 55.43 0.74 -25.16 16 8 Si 0.90 21.29 29.54 -169.99 -5.02 16.27 16 9 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 10 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 11 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 12 C 0.70 13.83 8.12 -86.92 -0.71 13.12 16 13 O -0.57 -13.47 13.34 5.29 0.07 -13.40 16 14 N -0.70 -10.19 5.21 -14.19 -0.07 -10.26 16 15 C 0.21 2.96 6.30 -83.65 -0.53 2.43 16 16 C -0.16 -1.81 9.95 -39.45 -0.39 -2.20 16 17 C -0.04 -0.49 9.68 -39.23 -0.38 -0.87 16 18 C -0.07 -0.90 5.87 -104.95 -0.62 -1.52 16 19 C 0.08 1.00 7.45 -14.13 -0.11 0.89 16 20 N -0.27 -3.56 11.34 33.05 0.37 -3.18 16 21 N -0.26 -3.24 11.56 29.44 0.34 -2.90 16 22 C -0.05 -0.39 12.38 51.72 0.64 0.25 16 23 S 0.13 1.13 22.35 -107.50 -2.40 -1.28 16 24 C -0.07 -0.84 9.61 -39.23 -0.38 -1.22 16 25 C -0.12 -1.83 8.67 -39.45 -0.34 -2.17 16 26 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 27 H 0.08 1.19 8.07 -51.93 -0.42 0.78 16 28 H 0.05 0.56 6.30 -51.93 -0.33 0.23 16 29 H 0.04 0.90 8.07 -51.93 -0.42 0.48 16 30 H 0.05 1.31 7.42 -51.93 -0.39 0.93 16 31 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 32 H 0.40 4.52 6.52 -40.82 -0.27 4.25 16 33 H 0.13 1.14 8.06 -52.49 -0.42 0.72 16 34 H 0.14 1.42 7.85 -52.49 -0.41 1.00 16 35 H 0.21 0.95 8.06 -52.49 -0.42 0.53 16 36 H 0.13 1.35 7.36 -52.49 -0.39 0.97 16 37 H 0.16 2.72 6.21 -52.48 -0.33 2.40 16 LS Contribution 337.26 15.07 5.08 5.08 Total: -1.00 -33.92 337.26 -7.83 -41.74 By element: Atomic # 1 Polarization: 5.77 SS G_CDS: -3.75 Total: 2.01 kcal Atomic # 6 Polarization: 6.45 SS G_CDS: -2.64 Total: 3.81 kcal Atomic # 7 Polarization: -55.09 SS G_CDS: 0.84 Total: -54.25 kcal Atomic # 8 Polarization: -13.47 SS G_CDS: 0.07 Total: -13.40 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Atomic # 16 Polarization: 1.13 SS G_CDS: -2.40 Total: -1.28 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -33.92 -7.83 -41.74 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001365053235.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.002 kcal (2) G-P(sol) polarization free energy of solvation -33.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.742 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds