Wall clock time and date at job start Tue Mar 31 2020 12:29:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46499 * 120.00333 * 2 1 4 4 C 1.50695 * 109.47291 * 270.00449 * 3 2 1 5 5 H 1.07994 * 120.00094 * 359.97438 * 4 3 2 6 6 C 1.37876 * 119.99901 * 180.02562 * 4 3 2 7 7 N 1.31519 * 119.99961 * 0.02562 * 6 4 3 8 8 Si 1.86797 * 120.00082 * 180.02562 * 6 4 3 9 9 H 1.48502 * 109.47225 * 359.97438 * 8 6 4 10 10 H 1.48505 * 109.47469 * 120.00084 * 8 6 4 11 11 H 1.48502 * 109.47497 * 239.99930 * 8 6 4 12 12 C 1.34782 * 119.99630 * 180.02562 * 2 1 3 13 13 O 1.21590 * 119.99707 * 179.97438 * 12 2 1 14 14 N 1.34773 * 119.99759 * 359.97438 * 12 2 1 15 15 C 1.39803 * 119.99548 * 184.56386 * 14 12 2 16 16 C 1.39005 * 119.92909 * 144.87021 * 15 14 12 17 17 C 1.37808 * 120.07518 * 180.02562 * 16 15 14 18 18 C 1.39602 * 119.92378 * 359.97438 * 17 16 15 19 19 C 1.47832 * 120.06838 * 179.97438 * 18 17 16 20 20 N 1.30646 * 126.22805 * 359.69402 * 19 18 17 21 21 N 1.26254 * 116.22682 * 180.26070 * 20 19 18 22 22 C 1.29344 * 117.91687 * 359.97438 * 21 20 19 23 23 S 1.71277 * 108.92348 * 359.97438 * 22 21 20 24 24 C 1.39602 * 119.86054 * 0.25362 * 18 17 16 25 25 C 1.37807 * 119.92655 * 359.53135 * 24 18 17 26 26 H 1.09007 * 109.46587 * 270.00156 * 1 2 3 27 27 H 1.09001 * 109.46622 * 29.98869 * 1 2 3 28 28 H 1.08994 * 109.47403 * 149.99777 * 1 2 3 29 29 H 1.08998 * 109.47093 * 30.00668 * 3 2 1 30 30 H 1.09003 * 109.46927 * 150.00240 * 3 2 1 31 31 H 0.97003 * 119.99735 * 180.02562 * 7 6 4 32 32 H 0.96993 * 120.00484 * 4.56338 * 14 12 2 33 33 H 1.08001 * 119.96865 * 359.97438 * 16 15 14 34 34 H 1.07994 * 120.03914 * 179.97438 * 17 16 15 35 35 H 1.07999 * 125.53777 * 179.97438 * 22 21 20 36 36 H 1.08001 * 120.03377 * 179.74759 * 24 18 17 37 37 H 1.08003 * 119.96182 * 180.21206 * 25 24 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4487 1.7038 -1.4207 5 1 2.0981 1.0959 -2.2416 6 6 3.1270 2.8774 -1.6726 7 7 3.5553 3.6169 -0.6729 8 14 3.4377 3.4172 -3.4337 9 1 2.8596 2.4173 -4.3672 10 1 2.8007 4.7384 -3.6663 11 1 4.9001 3.5247 -3.6679 12 6 2.1388 -1.1673 -0.0005 13 8 3.3548 -1.1673 -0.0010 14 7 1.4649 -2.3344 -0.0005 15 6 2.1606 -3.5432 0.0953 16 6 1.6063 -4.6089 0.7949 17 6 2.2896 -5.8016 0.8916 18 6 3.5397 -5.9392 0.2856 19 6 4.2758 -7.2171 0.3879 20 7 3.8762 -8.2902 1.0169 21 7 4.6607 -9.2789 0.9875 22 6 5.7765 -9.1478 0.3465 23 16 5.8564 -7.5688 -0.3122 24 6 4.0958 -4.8656 -0.4122 25 6 3.4053 -3.6769 -0.5090 26 1 -0.3633 0.0000 1.0278 27 1 -0.3632 0.8901 -0.5137 28 1 -0.3634 -0.8899 -0.5138 29 1 1.6086 2.0283 0.5139 30 1 3.1500 1.1382 0.5138 31 1 4.0322 4.4429 -0.8502 32 1 0.4972 -2.3357 -0.0670 33 1 0.6393 -4.5017 1.2638 34 1 1.8586 -6.6290 1.4357 35 1 6.5345 -9.9101 0.2433 36 1 5.0645 -4.9676 -0.8786 37 1 3.8334 -2.8470 -1.0516 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001365053235.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:29:44 Heat of formation + Delta-G solvation = 55.473689 kcal Electronic energy + Delta-G solvation = -22762.096115 eV Core-core repulsion = 19245.535436 eV Total energy + Delta-G solvation = -3516.560678 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.089 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.14431 -41.69502 -39.80722 -36.79657 -36.08081 -34.68908 -33.12184 -32.10522 -30.60906 -29.52838 -27.63496 -27.06533 -25.22963 -24.17267 -23.35773 -21.55680 -20.84780 -20.07595 -19.34817 -18.67231 -18.34683 -17.98395 -16.84116 -16.65936 -16.59984 -16.12734 -15.84302 -15.50078 -14.91538 -14.75424 -14.62481 -14.38594 -14.24349 -14.01604 -13.77539 -13.48554 -13.40660 -13.09291 -12.80124 -12.53354 -12.48635 -12.18648 -11.93006 -11.68015 -11.47422 -11.36380 -11.07291 -10.88888 -10.66942 -10.62851 -10.02016 -9.53197 -8.92539 -8.20619 -6.35274 -0.98425 -0.13170 0.32093 0.34301 0.39071 1.38033 1.40304 1.51103 1.55330 1.69986 2.15084 2.40006 2.79279 2.88700 3.02813 3.09811 3.70088 3.81391 3.88448 4.05891 4.25383 4.30824 4.41354 4.47343 4.57684 4.67278 4.82419 4.95798 5.00213 5.14162 5.20800 5.31133 5.36642 5.44558 5.55860 5.78376 5.92634 6.05637 6.06913 6.73811 7.01904 7.31698 7.48208 7.59496 8.86000 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.021690 B = 0.002624 C = 0.002411 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1290.624349 B =10669.371049 C =11610.227954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.619 5.619 3 C 0.274 3.726 4 C -0.540 4.540 5 H 0.053 0.947 6 C 0.008 3.992 7 N -0.928 5.928 8 Si 0.966 3.034 9 H -0.268 1.268 10 H -0.270 1.270 11 H -0.283 1.283 12 C 0.693 3.307 13 O -0.615 6.615 14 N -0.674 5.674 15 C 0.185 3.815 16 C -0.139 4.139 17 C -0.046 4.046 18 C -0.069 4.069 19 C 0.054 3.946 20 N -0.285 5.285 21 N -0.300 5.300 22 C -0.027 4.027 23 S 0.172 5.828 24 C -0.068 4.068 25 C -0.142 4.142 26 H 0.073 0.927 27 H 0.073 0.927 28 H 0.088 0.912 29 H 0.030 0.970 30 H 0.001 0.999 31 H 0.267 0.733 32 H 0.423 0.577 33 H 0.167 0.833 34 H 0.152 0.848 35 H 0.255 0.745 36 H 0.139 0.861 37 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.775 -22.236 0.426 22.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.353 5.353 3 C 0.153 3.847 4 C -0.578 4.578 5 H 0.071 0.929 6 C -0.191 4.191 7 N -0.568 5.568 8 Si 0.791 3.209 9 H -0.192 1.192 10 H -0.195 1.195 11 H -0.209 1.209 12 C 0.394 3.606 13 O -0.495 6.495 14 N -0.325 5.325 15 C 0.087 3.913 16 C -0.159 4.159 17 C -0.068 4.068 18 C -0.074 4.074 19 C -0.222 4.222 20 N -0.123 5.123 21 N -0.136 5.136 22 C -0.325 4.325 23 S 0.416 5.584 24 C -0.089 4.089 25 C -0.163 4.163 26 H 0.092 0.908 27 H 0.092 0.908 28 H 0.106 0.894 29 H 0.048 0.952 30 H 0.019 0.981 31 H 0.076 0.924 32 H 0.264 0.736 33 H 0.184 0.816 34 H 0.169 0.831 35 H 0.271 0.729 36 H 0.157 0.843 37 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -2.010 -22.264 0.672 22.364 hybrid contribution 0.129 0.754 -0.751 1.072 sum -1.880 -21.509 -0.079 21.591 Atomic orbital electron populations 1.21929 0.77805 1.04049 1.02799 1.47380 1.08069 1.04831 1.75011 1.18729 0.91016 0.78920 0.96056 1.21724 1.36630 1.06404 0.93070 0.92883 1.25821 0.94985 0.96494 1.01771 1.70053 1.38982 1.14871 1.32884 0.85386 0.77818 0.78358 0.79330 1.19177 1.19535 1.20873 1.16099 0.85127 0.81119 0.78211 1.90863 1.13686 1.86353 1.58602 1.42640 1.10953 1.02325 1.76556 1.17988 0.93030 0.85321 0.94931 1.21070 1.03048 0.91748 1.00055 1.21180 0.92078 0.97501 0.96008 1.17654 0.96017 0.89022 1.04749 1.28254 0.96553 0.98175 0.99234 1.71883 1.25544 0.96202 1.18662 1.70949 1.02367 1.21835 1.18403 1.30935 1.00600 1.02106 0.98879 1.84748 1.15865 1.08784 1.48975 1.21088 0.99570 0.91024 0.97201 1.21215 0.95991 0.97854 1.01234 0.90824 0.90789 0.89371 0.95211 0.98070 0.92414 0.73604 0.81588 0.83063 0.72950 0.84304 0.86098 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.06 10.24 127.77 1.31 3.37 16 2 N -0.62 -25.14 2.86 -869.31 -2.48 -27.62 16 3 C 0.27 14.36 5.16 85.63 0.44 14.80 16 4 C -0.54 -30.29 9.39 25.60 0.24 -30.05 16 5 H 0.05 2.96 7.81 -2.91 -0.02 2.94 16 6 C 0.01 0.47 5.46 84.65 0.46 0.93 16 7 N -0.93 -55.16 13.29 21.45 0.28 -54.88 16 8 Si 0.97 44.12 29.54 68.60 2.03 46.14 16 9 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 10 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 11 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 12 C 0.69 28.18 8.12 179.05 1.45 29.63 16 13 O -0.62 -31.04 13.34 -4.00 -0.05 -31.09 16 14 N -0.67 -19.27 5.21 -317.07 -1.65 -20.92 16 15 C 0.18 5.11 6.30 38.24 0.24 5.35 16 16 C -0.14 -2.84 9.95 22.35 0.22 -2.62 16 17 C -0.05 -0.96 9.68 22.50 0.22 -0.75 16 18 C -0.07 -1.62 5.87 -20.08 -0.12 -1.74 16 19 C 0.05 1.21 7.45 87.41 0.65 1.86 16 20 N -0.28 -7.25 11.34 -49.35 -0.56 -7.81 16 21 N -0.30 -6.89 11.56 -60.76 -0.70 -7.59 16 22 C -0.03 -0.39 12.38 130.61 1.62 1.23 16 23 S 0.17 2.67 22.35 -56.49 -1.26 1.41 16 24 C -0.07 -1.71 9.61 22.50 0.22 -1.49 16 25 C -0.14 -4.41 8.67 22.35 0.19 -4.22 16 26 H 0.07 1.62 8.14 -2.38 -0.02 1.60 16 27 H 0.07 2.11 8.07 -2.39 -0.02 2.09 16 28 H 0.09 1.69 6.30 -2.39 -0.02 1.67 16 29 H 0.03 1.57 8.07 -2.39 -0.02 1.55 16 30 H 0.00 0.07 7.42 -2.39 -0.02 0.05 16 31 H 0.27 14.86 8.31 -92.71 -0.77 14.09 16 32 H 0.42 8.47 6.52 -92.71 -0.60 7.86 16 33 H 0.17 2.24 8.06 -2.91 -0.02 2.21 16 34 H 0.15 2.80 7.85 -2.91 -0.02 2.78 16 35 H 0.25 1.20 8.06 -2.91 -0.02 1.18 16 36 H 0.14 2.98 7.36 -2.91 -0.02 2.96 16 37 H 0.12 4.61 6.21 -2.91 -0.02 4.59 16 Total: -1.00 -78.01 337.26 3.27 -74.74 By element: Atomic # 1 Polarization: 10.79 SS G_CDS: 0.52 Total: 11.31 kcal Atomic # 6 Polarization: 9.16 SS G_CDS: 7.15 Total: 16.30 kcal Atomic # 7 Polarization: -113.71 SS G_CDS: -5.11 Total: -118.82 kcal Atomic # 8 Polarization: -31.04 SS G_CDS: -0.05 Total: -31.09 kcal Atomic # 14 Polarization: 44.12 SS G_CDS: 2.03 Total: 46.14 kcal Atomic # 16 Polarization: 2.67 SS G_CDS: -1.26 Total: 1.41 kcal Total: -78.01 3.27 -74.74 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001365053235.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.212 kcal (2) G-P(sol) polarization free energy of solvation -78.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.270 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.739 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds