Wall clock time and date at job start Tue Mar 31 2020 12:01:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09005 * 109.47242 * 2 1 4 4 N 1.46501 * 109.47387 * 120.00079 * 2 1 3 5 5 C 1.34780 * 119.99894 * 275.00394 * 4 2 1 6 6 O 1.21586 * 120.00106 * 359.97438 * 5 4 2 7 7 N 1.34770 * 119.99995 * 179.97438 * 5 4 2 8 8 C 1.39951 * 120.00289 * 184.52192 * 7 5 4 9 9 C 1.39290 * 119.94929 * 144.36100 * 8 7 5 10 10 C 1.38489 * 120.42707 * 179.97438 * 9 8 7 11 11 C 1.37681 * 120.32199 * 359.97438 * 10 9 8 12 12 C 1.40740 * 119.88528 * 0.02562 * 11 10 9 13 13 C 1.41407 * 120.20750 * 180.02562 * 12 11 10 14 14 H 1.08001 * 119.99828 * 155.37569 * 13 12 11 15 15 C 1.39927 * 120.00070 * 335.36601 * 13 12 11 16 16 N 1.30827 * 120.00438 * 344.60166 * 15 13 12 17 17 Si 1.86803 * 120.00100 * 164.60362 * 15 13 12 18 18 H 1.48499 * 109.47112 * 59.99937 * 17 15 13 19 19 H 1.48497 * 109.47631 * 180.02562 * 17 15 13 20 20 H 1.48503 * 109.46832 * 300.00091 * 17 15 13 21 21 C 1.38241 * 119.94493 * 324.08546 * 8 7 5 22 22 C 1.50704 * 109.47052 * 240.00170 * 2 1 3 23 23 C 1.35343 * 123.76439 * 84.72966 * 22 2 1 24 24 S 1.72127 * 104.15008 * 179.89917 * 23 22 2 25 25 N 1.56515 * 95.88237 * 0.32458 * 24 23 22 26 26 N 1.27572 * 109.22293 * 359.80018 * 25 24 23 27 27 H 1.09005 * 109.47242 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47667 * 299.99769 * 1 2 3 29 29 H 1.09004 * 109.47191 * 60.00006 * 1 2 3 30 30 H 0.97001 * 119.99648 * 94.99950 * 4 2 1 31 31 H 0.97006 * 119.99761 * 4.52445 * 7 5 4 32 32 H 1.07995 * 119.78280 * 0.02562 * 9 8 7 33 33 H 1.08001 * 119.83742 * 180.02562 * 10 9 8 34 34 H 1.08005 * 120.05319 * 179.97438 * 11 10 9 35 35 H 0.96997 * 120.00249 * 179.97438 * 16 15 13 36 36 H 1.07998 * 120.15546 * 0.02562 * 21 8 7 37 37 H 1.07996 * 127.92864 * 359.97438 * 23 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 2.1470 -0.0183 2.3572 6 8 1.8582 1.1615 2.4117 7 7 2.5958 -0.6537 3.4577 8 6 2.6400 0.0182 4.6846 9 6 2.3673 -0.6701 5.8645 10 6 2.4087 -0.0152 7.0840 11 6 2.7207 1.3245 7.1433 12 6 2.9986 2.0329 5.9594 13 6 3.3204 3.4089 6.0125 14 1 3.9025 3.8582 5.2215 15 6 2.8844 4.1883 7.0897 16 7 1.9442 3.7417 7.8821 17 14 3.6449 5.8667 7.3963 18 1 3.4225 6.7348 6.2122 19 1 3.0142 6.4856 8.5898 20 1 5.1033 5.7139 7.6311 21 6 2.9598 1.3625 4.7240 22 6 2.0323 -0.7104 -1.2305 23 6 2.1856 -0.1119 -2.4347 24 16 2.7788 -1.3649 -3.4549 25 7 2.7792 -2.4796 -2.3562 26 7 2.3660 -1.9846 -1.2555 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 2.2490 -1.6318 1.1525 31 1 2.8883 -1.5768 3.3993 32 1 2.1228 -1.7213 5.8280 33 1 2.1960 -0.5582 7.9930 34 1 2.7514 1.8310 8.0968 35 1 1.6422 4.2819 8.6290 36 1 3.1754 1.8959 3.8101 37 1 1.9833 0.9164 -2.6955 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001365201061.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:01:05 Heat of formation + Delta-G solvation = 69.016408 kcal Electronic energy + Delta-G solvation = -23035.170025 eV Core-core repulsion = 19519.196603 eV Total energy + Delta-G solvation = -3515.973422 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.089 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.40583 -39.85178 -37.44355 -35.72056 -34.29566 -33.07065 -32.28173 -29.89547 -29.74036 -27.76631 -27.29957 -25.22823 -24.10376 -21.76540 -21.24545 -20.77499 -20.00278 -18.82787 -18.04543 -17.48405 -16.17142 -16.06248 -15.73758 -15.34565 -14.86121 -14.65404 -14.52147 -14.39968 -13.64554 -13.31313 -12.98076 -12.85168 -12.72247 -12.39306 -12.21613 -11.95163 -11.63648 -11.51919 -11.25255 -11.05945 -10.63705 -10.50611 -10.44395 -10.27554 -10.11794 -10.06010 -9.69686 -9.49751 -9.16299 -8.95328 -8.78713 -7.36686 -6.81524 -6.63656 -4.26715 -0.13241 0.72929 1.31642 1.82045 2.79580 2.90464 3.05724 3.12186 3.15801 3.27770 3.62028 3.74721 4.01223 4.43801 4.54521 4.68579 4.72931 4.93995 5.08198 5.21697 5.55802 5.74811 5.80762 6.10712 6.31350 6.47929 6.53866 6.86757 6.87364 7.11717 7.18752 7.32683 7.38796 7.42885 7.76043 7.91200 8.07981 8.17602 8.32915 8.50237 8.73971 8.96646 9.04452 9.11128 10.29477 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.021356 B = 0.002682 C = 0.002496 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1310.790266 B =10436.829418 C =11214.753340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.251 3.749 3 H 0.112 0.888 4 N -0.744 5.744 5 C 0.700 3.300 6 O -0.564 6.564 7 N -0.680 5.680 8 C 0.166 3.834 9 C -0.262 4.262 10 C -0.093 4.093 11 C -0.175 4.175 12 C 0.117 3.883 13 C -0.456 4.456 14 H 0.076 0.924 15 C 0.075 3.925 16 N -0.797 5.797 17 Si 0.909 3.091 18 H -0.266 1.266 19 H -0.279 1.279 20 H -0.264 1.264 21 C -0.208 4.208 22 C 0.024 3.976 23 C -0.285 4.285 24 S 0.428 5.572 25 N -0.285 5.285 26 N -0.234 5.234 27 H 0.060 0.940 28 H 0.080 0.920 29 H 0.066 0.934 30 H 0.402 0.598 31 H 0.395 0.605 32 H 0.088 0.912 33 H 0.091 0.909 34 H 0.121 0.879 35 H 0.279 0.721 36 H 0.112 0.888 37 H 0.202 0.798 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.329 -7.709 -19.493 20.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.141 3.859 3 H 0.130 0.870 4 N -0.402 5.402 5 C 0.401 3.599 6 O -0.440 6.440 7 N -0.326 5.326 8 C 0.074 3.926 9 C -0.284 4.284 10 C -0.112 4.112 11 C -0.194 4.194 12 C 0.114 3.886 13 C -0.486 4.486 14 H 0.094 0.906 15 C -0.142 4.142 16 N -0.422 5.422 17 Si 0.734 3.266 18 H -0.190 1.190 19 H -0.204 1.204 20 H -0.189 1.189 21 C -0.230 4.230 22 C -0.121 4.121 23 C -0.441 4.441 24 S 0.563 5.437 25 N -0.265 5.265 26 N -0.102 5.102 27 H 0.079 0.921 28 H 0.099 0.901 29 H 0.085 0.915 30 H 0.237 0.763 31 H 0.228 0.772 32 H 0.106 0.894 33 H 0.109 0.891 34 H 0.139 0.861 35 H 0.090 0.910 36 H 0.130 0.870 37 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges -0.129 -8.228 -19.998 21.625 hybrid contribution -0.154 1.017 0.908 1.372 sum -0.283 -7.212 -19.090 20.409 Atomic orbital electron populations 1.22233 0.93439 1.02784 1.03512 1.19087 0.94112 0.95361 0.77370 0.86994 1.45076 1.72717 1.14062 1.08338 1.15924 0.78623 0.85291 0.80106 1.90983 1.55800 1.13558 1.83630 1.42538 1.67178 1.15693 1.07160 1.17234 1.01042 0.92478 0.81863 1.20037 1.18067 0.98283 0.92025 1.20450 1.00575 0.95077 0.95097 1.21404 1.06465 0.92421 0.99160 1.17513 0.88000 0.92958 0.90115 1.19522 1.29993 0.93592 1.05481 0.90581 1.25890 0.93229 1.00275 0.94843 1.69818 1.20723 1.38065 1.13624 0.86358 0.80299 0.81496 0.78465 1.19043 1.20414 1.18911 1.21088 1.10977 0.93128 0.97810 1.22531 1.01902 0.90028 0.97673 1.28094 1.09535 1.09025 0.97474 1.81489 1.45265 0.95056 1.21887 1.78863 1.21441 1.25536 1.00621 1.71063 1.12194 1.10919 1.16004 0.92137 0.90133 0.91501 0.76317 0.77163 0.89402 0.89124 0.86101 0.90982 0.87004 0.78079 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.74 9.47 37.16 0.35 -1.39 16 2 C 0.25 2.97 2.96 -69.08 -0.20 2.76 16 3 H 0.11 1.41 7.58 -51.93 -0.39 1.01 16 4 N -0.74 -10.32 5.07 -59.81 -0.30 -10.62 16 5 C 0.70 12.99 8.36 -86.92 -0.73 12.26 16 6 O -0.56 -12.85 13.49 5.29 0.07 -12.78 16 7 N -0.68 -12.63 5.34 -14.27 -0.08 -12.71 16 8 C 0.17 3.85 6.28 -83.76 -0.53 3.33 16 9 C -0.26 -5.92 9.97 -39.10 -0.39 -6.31 16 10 C -0.09 -2.22 10.02 -39.69 -0.40 -2.61 16 11 C -0.17 -4.67 8.69 -38.84 -0.34 -5.01 16 12 C 0.12 3.28 5.58 -106.85 -0.60 2.68 16 13 C -0.46 -12.69 9.06 -37.74 -0.34 -13.03 16 14 H 0.08 2.06 7.89 -52.49 -0.41 1.64 16 15 C 0.07 1.94 5.19 -17.35 -0.09 1.85 16 16 N -0.80 -21.26 10.82 55.55 0.60 -20.66 16 17 Si 0.91 19.33 29.59 -169.99 -5.03 14.30 16 18 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 19 H -0.28 -5.74 7.11 56.52 0.40 -5.34 16 20 H -0.26 -5.54 7.11 56.52 0.40 -5.13 16 21 C -0.21 -5.51 8.43 -38.69 -0.33 -5.83 16 22 C 0.02 0.25 5.92 -83.66 -0.50 -0.25 16 23 C -0.28 -2.03 11.36 29.70 0.34 -1.69 16 24 S 0.43 2.84 23.40 -107.50 -2.52 0.32 16 25 N -0.29 -3.06 12.54 60.35 0.76 -2.30 16 26 N -0.23 -2.73 10.74 32.45 0.35 -2.38 16 27 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.08 1.07 8.14 -51.93 -0.42 0.64 16 29 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.40 4.93 7.89 -40.82 -0.32 4.61 16 31 H 0.39 5.82 8.84 -40.82 -0.36 5.46 16 32 H 0.09 1.72 8.06 -52.49 -0.42 1.30 16 33 H 0.09 1.91 8.06 -52.49 -0.42 1.49 16 34 H 0.12 3.31 6.07 -52.48 -0.32 2.99 16 35 H 0.28 6.78 8.30 -40.82 -0.34 6.44 16 36 H 0.11 3.05 6.27 -52.49 -0.33 2.72 16 37 H 0.20 0.82 8.06 -52.49 -0.42 0.39 16 LS Contribution 335.04 15.07 5.05 5.05 Total: -1.00 -33.00 335.04 -8.65 -41.65 By element: Atomic # 1 Polarization: 17.19 SS G_CDS: -3.81 Total: 13.38 kcal Atomic # 6 Polarization: -9.51 SS G_CDS: -3.74 Total: -13.25 kcal Atomic # 7 Polarization: -49.99 SS G_CDS: 1.33 Total: -48.66 kcal Atomic # 8 Polarization: -12.85 SS G_CDS: 0.07 Total: -12.78 kcal Atomic # 14 Polarization: 19.33 SS G_CDS: -5.03 Total: 14.30 kcal Atomic # 16 Polarization: 2.84 SS G_CDS: -2.52 Total: 0.32 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -33.00 -8.65 -41.65 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001365201061.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.662 kcal (2) G-P(sol) polarization free energy of solvation -32.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.645 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds