Wall clock time and date at job start Tue Mar 31 2020 12:01:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09005 * 109.47242 * 2 1 4 4 N 1.46501 * 109.47387 * 120.00079 * 2 1 3 5 5 C 1.34780 * 119.99894 * 275.00394 * 4 2 1 6 6 O 1.21586 * 120.00106 * 359.97438 * 5 4 2 7 7 N 1.34770 * 119.99995 * 179.97438 * 5 4 2 8 8 C 1.39951 * 120.00289 * 184.52192 * 7 5 4 9 9 C 1.39290 * 119.94929 * 144.36100 * 8 7 5 10 10 C 1.38489 * 120.42707 * 179.97438 * 9 8 7 11 11 C 1.37681 * 120.32199 * 359.97438 * 10 9 8 12 12 C 1.40740 * 119.88528 * 0.02562 * 11 10 9 13 13 C 1.41407 * 120.20750 * 180.02562 * 12 11 10 14 14 H 1.08001 * 119.99828 * 155.37569 * 13 12 11 15 15 C 1.39927 * 120.00070 * 335.36601 * 13 12 11 16 16 N 1.30827 * 120.00438 * 344.60166 * 15 13 12 17 17 Si 1.86803 * 120.00100 * 164.60362 * 15 13 12 18 18 H 1.48499 * 109.47112 * 59.99937 * 17 15 13 19 19 H 1.48497 * 109.47631 * 180.02562 * 17 15 13 20 20 H 1.48503 * 109.46832 * 300.00091 * 17 15 13 21 21 C 1.38241 * 119.94493 * 324.08546 * 8 7 5 22 22 C 1.50704 * 109.47052 * 240.00170 * 2 1 3 23 23 C 1.35343 * 123.76439 * 84.72966 * 22 2 1 24 24 S 1.72127 * 104.15008 * 179.89917 * 23 22 2 25 25 N 1.56515 * 95.88237 * 0.32458 * 24 23 22 26 26 N 1.27572 * 109.22293 * 359.80018 * 25 24 23 27 27 H 1.09005 * 109.47242 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47667 * 299.99769 * 1 2 3 29 29 H 1.09004 * 109.47191 * 60.00006 * 1 2 3 30 30 H 0.97001 * 119.99648 * 94.99950 * 4 2 1 31 31 H 0.97006 * 119.99761 * 4.52445 * 7 5 4 32 32 H 1.07995 * 119.78280 * 0.02562 * 9 8 7 33 33 H 1.08001 * 119.83742 * 180.02562 * 10 9 8 34 34 H 1.08005 * 120.05319 * 179.97438 * 11 10 9 35 35 H 0.96997 * 120.00249 * 179.97438 * 16 15 13 36 36 H 1.07998 * 120.15546 * 0.02562 * 21 8 7 37 37 H 1.07996 * 127.92864 * 359.97438 * 23 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 2.1470 -0.0183 2.3572 6 8 1.8582 1.1615 2.4117 7 7 2.5958 -0.6537 3.4577 8 6 2.6400 0.0182 4.6846 9 6 2.3673 -0.6701 5.8645 10 6 2.4087 -0.0152 7.0840 11 6 2.7207 1.3245 7.1433 12 6 2.9986 2.0329 5.9594 13 6 3.3204 3.4089 6.0125 14 1 3.9025 3.8582 5.2215 15 6 2.8844 4.1883 7.0897 16 7 1.9442 3.7417 7.8821 17 14 3.6449 5.8667 7.3963 18 1 3.4225 6.7348 6.2122 19 1 3.0142 6.4856 8.5898 20 1 5.1033 5.7139 7.6311 21 6 2.9598 1.3625 4.7240 22 6 2.0323 -0.7104 -1.2305 23 6 2.1856 -0.1119 -2.4347 24 16 2.7788 -1.3649 -3.4549 25 7 2.7792 -2.4796 -2.3562 26 7 2.3660 -1.9846 -1.2555 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 2.2490 -1.6318 1.1525 31 1 2.8883 -1.5768 3.3993 32 1 2.1228 -1.7213 5.8280 33 1 2.1960 -0.5582 7.9930 34 1 2.7514 1.8310 8.0968 35 1 1.6422 4.2819 8.6290 36 1 3.1754 1.8959 3.8101 37 1 1.9833 0.9164 -2.6955 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001365201061.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:01:04 Heat of formation + Delta-G solvation = 45.963973 kcal Electronic energy + Delta-G solvation = -23036.169654 eV Core-core repulsion = 19519.196603 eV Total energy + Delta-G solvation = -3516.973051 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.089 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.18818 -41.32438 -39.20146 -36.96989 -36.05104 -34.85708 -33.31989 -31.71504 -30.93610 -29.40493 -28.06601 -27.21865 -25.12011 -23.29598 -22.67634 -22.05253 -21.61262 -19.82716 -19.59364 -19.04288 -17.47075 -17.04740 -16.87735 -16.71346 -16.44988 -16.25148 -16.04205 -15.62482 -15.00722 -14.75452 -14.63221 -14.20850 -13.98005 -13.61160 -13.45441 -13.13008 -13.07157 -12.83648 -12.79233 -12.55578 -12.43029 -12.19803 -11.97178 -11.56984 -11.28542 -11.15619 -11.01880 -10.94651 -10.73521 -10.63759 -10.19620 -9.35471 -8.67886 -8.57508 -6.33636 -0.75357 0.14789 0.68820 0.95671 1.04397 1.10042 1.37688 1.49778 1.53942 1.65212 2.17286 2.23806 2.77277 2.83632 3.27776 3.73390 3.78415 3.94049 4.15792 4.21922 4.48320 4.50691 4.67641 4.70467 4.80648 5.08222 5.13697 5.16874 5.20109 5.22593 5.35838 5.42021 5.73384 5.86161 6.08624 6.15753 6.19475 6.39875 6.69615 6.72505 6.97860 7.04183 7.07384 7.58527 8.37254 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.021356 B = 0.002682 C = 0.002496 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1310.790266 B =10436.829418 C =11214.753340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.248 3.752 3 H 0.102 0.898 4 N -0.724 5.724 5 C 0.699 3.301 6 O -0.610 6.610 7 N -0.671 5.671 8 C 0.174 3.826 9 C -0.253 4.253 10 C -0.091 4.091 11 C -0.201 4.201 12 C 0.087 3.913 13 C -0.499 4.499 14 H 0.066 0.934 15 C 0.034 3.966 16 N -0.826 5.826 17 Si 0.984 3.016 18 H -0.264 1.264 19 H -0.263 1.263 20 H -0.259 1.259 21 C -0.234 4.234 22 C 0.004 3.996 23 C -0.275 4.275 24 S 0.512 5.488 25 N -0.333 5.333 26 N -0.263 5.263 27 H 0.062 0.938 28 H 0.051 0.949 29 H 0.095 0.905 30 H 0.412 0.588 31 H 0.416 0.584 32 H 0.129 0.871 33 H 0.122 0.878 34 H 0.107 0.893 35 H 0.288 0.712 36 H 0.091 0.909 37 H 0.234 0.766 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.362 -8.473 -21.131 22.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.139 3.861 3 H 0.120 0.880 4 N -0.382 5.382 5 C 0.399 3.601 6 O -0.488 6.488 7 N -0.319 5.319 8 C 0.080 3.920 9 C -0.274 4.274 10 C -0.110 4.110 11 C -0.221 4.221 12 C 0.084 3.916 13 C -0.529 4.529 14 H 0.084 0.916 15 C -0.180 4.180 16 N -0.452 5.452 17 Si 0.805 3.195 18 H -0.188 1.188 19 H -0.187 1.187 20 H -0.183 1.183 21 C -0.256 4.256 22 C -0.142 4.142 23 C -0.431 4.431 24 S 0.647 5.353 25 N -0.312 5.312 26 N -0.130 5.130 27 H 0.082 0.918 28 H 0.070 0.930 29 H 0.114 0.886 30 H 0.249 0.751 31 H 0.253 0.747 32 H 0.147 0.853 33 H 0.140 0.860 34 H 0.125 0.875 35 H 0.099 0.901 36 H 0.109 0.891 37 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges -0.162 -9.084 -21.681 23.508 hybrid contribution -0.167 1.129 1.186 1.646 sum -0.329 -7.955 -20.495 21.987 Atomic orbital electron populations 1.22159 0.92685 1.02912 1.03487 1.19160 0.94740 0.94969 0.77206 0.87995 1.44941 1.71350 1.14367 1.07500 1.16070 0.78239 0.84784 0.80958 1.90962 1.57651 1.15764 1.84460 1.42327 1.67191 1.16451 1.05940 1.17286 0.99068 0.91650 0.83974 1.20444 1.15896 1.00051 0.90996 1.20816 0.99022 0.94132 0.97059 1.21379 1.08655 0.93871 0.98164 1.17858 0.88885 0.93654 0.91174 1.19742 1.31837 0.94470 1.06871 0.91582 1.26752 0.93127 1.04279 0.93884 1.69866 1.21413 1.39864 1.14098 0.85232 0.79462 0.76112 0.78718 1.18809 1.18692 1.18278 1.21041 1.13081 0.94843 0.96610 1.22264 1.03852 0.90248 0.97832 1.28542 1.07327 1.10685 0.96574 1.81181 1.42415 0.92707 1.19009 1.78553 1.23182 1.27907 1.01560 1.71061 1.13236 1.11577 1.17086 0.91849 0.93019 0.88619 0.75088 0.74671 0.85336 0.85999 0.87498 0.90124 0.89055 0.74977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.22 9.47 71.98 0.68 -2.54 16 2 C 0.25 5.73 2.96 44.24 0.13 5.86 16 3 H 0.10 2.57 7.58 -2.38 -0.02 2.55 16 4 N -0.72 -19.83 5.07 -461.41 -2.34 -22.17 16 5 C 0.70 26.18 8.36 179.06 1.50 27.67 16 6 O -0.61 -28.84 13.49 -3.99 -0.05 -28.89 16 7 N -0.67 -24.55 5.34 -317.33 -1.69 -26.24 16 8 C 0.17 8.08 6.28 38.10 0.24 8.32 16 9 C -0.25 -10.96 9.97 22.58 0.23 -10.73 16 10 C -0.09 -4.29 10.02 22.20 0.22 -4.07 16 11 C -0.20 -11.03 8.69 22.75 0.20 -10.84 16 12 C 0.09 5.10 5.58 -21.31 -0.12 4.98 16 13 C -0.50 -29.29 9.06 23.46 0.21 -29.08 16 14 H 0.07 3.82 7.89 -2.91 -0.02 3.80 16 15 C 0.03 1.81 5.19 85.25 0.44 2.25 16 16 N -0.83 -45.34 10.82 21.82 0.24 -45.10 16 17 Si 0.98 40.46 29.59 68.60 2.03 42.49 16 18 H -0.26 -10.64 7.11 99.48 0.71 -9.94 16 19 H -0.26 -10.01 7.11 99.48 0.71 -9.30 16 20 H -0.26 -10.29 7.11 99.48 0.71 -9.58 16 21 C -0.23 -12.89 8.43 22.85 0.19 -12.70 16 22 C 0.00 0.08 5.92 41.91 0.25 0.33 16 23 C -0.28 -3.13 11.36 67.15 0.76 -2.36 16 24 S 0.51 5.32 23.40 -56.49 -1.32 4.00 16 25 N -0.33 -6.59 12.54 37.02 0.46 -6.13 16 26 N -0.26 -5.80 10.74 -51.25 -0.55 -6.35 16 27 H 0.06 1.28 8.14 -2.38 -0.02 1.26 16 28 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 29 H 0.10 1.42 8.14 -2.38 -0.02 1.40 16 30 H 0.41 9.74 7.89 -92.71 -0.73 9.01 16 31 H 0.42 11.52 8.84 -92.70 -0.82 10.70 16 32 H 0.13 4.53 8.06 -2.91 -0.02 4.50 16 33 H 0.12 4.87 8.06 -2.91 -0.02 4.85 16 34 H 0.11 6.08 6.07 -2.91 -0.02 6.06 16 35 H 0.29 14.21 8.30 -92.71 -0.77 13.44 16 36 H 0.09 5.32 6.27 -2.91 -0.02 5.30 16 37 H 0.23 0.97 8.06 -2.91 -0.02 0.95 16 Total: -1.00 -76.23 335.04 1.30 -74.93 By element: Atomic # 1 Polarization: 36.78 SS G_CDS: -0.41 Total: 36.37 kcal Atomic # 6 Polarization: -27.84 SS G_CDS: 4.93 Total: -22.90 kcal Atomic # 7 Polarization: -102.11 SS G_CDS: -3.88 Total: -105.99 kcal Atomic # 8 Polarization: -28.84 SS G_CDS: -0.05 Total: -28.89 kcal Atomic # 14 Polarization: 40.46 SS G_CDS: 2.03 Total: 42.49 kcal Atomic # 16 Polarization: 5.32 SS G_CDS: -1.32 Total: 4.00 kcal Total: -76.23 1.30 -74.93 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001365201061.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.890 kcal (2) G-P(sol) polarization free energy of solvation -76.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.926 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.964 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds