Wall clock time and date at job start Tue Mar 31 2020 11:30:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46509 * 119.99888 * 2 1 4 4 C 1.50700 * 109.46856 * 275.00416 * 3 2 1 5 5 C 1.33637 * 122.75045 * 94.73785 * 4 3 2 6 6 S 1.76199 * 107.92064 * 179.97438 * 5 4 3 7 7 C 1.70977 * 90.28744 * 0.27088 * 6 5 4 8 8 N 1.29033 * 110.16303 * 359.84297 * 7 6 5 9 9 S 1.65598 * 120.00172 * 180.02562 * 2 1 3 10 10 O 1.42102 * 104.27557 * 26.07115 * 9 2 1 11 11 O 1.42103 * 104.27475 * 153.92754 * 9 2 1 12 12 C 1.81394 * 104.44713 * 269.99727 * 9 2 1 13 13 C 1.53006 * 109.47145 * 179.97438 * 12 9 2 14 14 C 1.53001 * 109.46907 * 300.00279 * 13 12 9 15 15 C 1.52997 * 109.47048 * 59.99941 * 13 12 9 16 16 C 1.50695 * 109.47040 * 180.02562 * 13 12 9 17 17 H 1.07994 * 120.00428 * 357.69507 * 16 13 12 18 18 C 1.37880 * 119.99758 * 177.69482 * 16 13 12 19 19 N 1.31521 * 120.00096 * 6.58150 * 18 16 13 20 20 Si 1.86802 * 119.99964 * 186.58102 * 18 16 13 21 21 H 1.48501 * 109.47321 * 84.99631 * 20 18 16 22 22 H 1.48506 * 109.47100 * 204.99482 * 20 18 16 23 23 H 1.48495 * 109.47111 * 324.99514 * 20 18 16 24 24 H 1.09001 * 109.47335 * 89.99906 * 1 2 3 25 25 H 1.08999 * 109.47165 * 209.99611 * 1 2 3 26 26 H 1.08996 * 109.47420 * 330.00062 * 1 2 3 27 27 H 1.08989 * 109.47003 * 155.00161 * 3 2 1 28 28 H 1.08995 * 109.46808 * 34.99881 * 3 2 1 29 29 H 1.07988 * 126.04201 * 0.02579 * 5 4 3 30 30 H 1.07993 * 124.92063 * 179.83981 * 7 6 5 31 31 H 1.09000 * 109.47807 * 299.99900 * 12 9 2 32 32 H 1.09002 * 109.47361 * 60.00421 * 12 9 2 33 33 H 1.08996 * 109.47276 * 66.66738 * 14 13 12 34 34 H 1.08999 * 109.47289 * 186.67054 * 14 13 12 35 35 H 1.08998 * 109.47420 * 306.66850 * 14 13 12 36 36 H 1.08999 * 109.47172 * 60.00315 * 15 13 12 37 37 H 1.09005 * 109.47146 * 180.02562 * 15 13 12 38 38 H 1.08994 * 109.47300 * 300.00610 * 15 13 12 39 39 H 0.96997 * 119.99781 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.3413 1.7658 -1.4154 5 6 1.4900 2.6365 -1.9659 6 16 2.0222 2.9450 -3.6170 7 6 3.3319 1.8664 -3.4056 8 7 3.3132 1.3724 -2.2137 9 16 2.2930 -1.4341 -0.0006 10 8 1.3970 -2.3558 -0.6063 11 8 3.5395 -1.1187 -0.6058 12 6 2.5194 -1.8268 1.7558 13 6 3.2810 -3.1471 1.8892 14 6 2.4841 -4.2658 1.2150 15 6 4.6484 -3.0174 1.2152 16 6 3.4684 -3.4736 3.3483 17 1 3.1160 -2.7881 4.1047 18 6 4.0900 -4.6476 3.7177 19 7 4.6339 -5.4199 2.8025 20 14 4.1596 -5.1413 5.5180 21 1 2.9096 -5.8543 5.8844 22 1 5.3236 -6.0362 5.7412 23 1 4.3011 -3.9259 6.3594 24 1 -0.3634 0.0000 -1.0277 25 1 -0.3633 -0.8900 0.5138 26 1 -0.3634 0.8899 0.5138 27 1 3.1857 1.1178 0.4342 28 1 1.6501 2.0043 0.5894 29 1 0.6287 3.0744 -1.4838 30 1 4.0680 1.6324 -4.1603 31 1 3.0867 -1.0296 2.2362 32 1 1.5452 -1.9196 2.2358 33 1 2.4494 -4.0901 0.1398 34 1 2.9654 -5.2239 1.4112 35 1 1.4698 -4.2805 1.6136 36 1 5.2160 -2.2205 1.6955 37 1 5.1908 -3.9582 1.3099 38 1 4.5124 -2.7814 0.1599 39 1 5.0709 -6.2460 3.0624 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001413282153.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:30:15 Heat of formation + Delta-G solvation = -14.740146 kcal Electronic energy + Delta-G solvation = -23475.726534 eV Core-core repulsion = 20059.272355 eV Total energy + Delta-G solvation = -3416.454178 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 318.086 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -39.91757 -36.45242 -36.26853 -36.02922 -35.10358 -31.64328 -31.01399 -27.92629 -26.66942 -25.68131 -25.27170 -25.19871 -24.18402 -19.83295 -19.41617 -18.48620 -18.04858 -17.25931 -16.06184 -15.95876 -15.78454 -15.30040 -14.77083 -14.59861 -14.22088 -13.89342 -13.45245 -13.29114 -13.07259 -12.90994 -12.68947 -12.47048 -12.14961 -11.87525 -11.73396 -11.32711 -11.19549 -11.05968 -10.97790 -10.88071 -10.64528 -10.34312 -10.25165 -10.05696 -9.63549 -9.62297 -9.54310 -9.53544 -9.09456 -8.95782 -8.62182 -8.35639 -6.01881 -4.13437 0.59226 0.91507 1.30145 1.62158 2.68205 3.27227 3.28747 3.34153 3.35702 4.13841 4.36577 4.51724 4.73866 4.75590 4.91869 5.13721 5.17473 5.22878 5.39524 5.50965 5.53487 5.70666 5.72961 5.80080 5.98419 6.04633 6.41794 6.64696 6.72124 6.82563 6.95780 7.08989 7.34941 7.52258 7.69639 7.74761 8.00384 8.13058 8.36283 8.84866 9.51488 10.99154 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.031417 B = 0.003524 C = 0.003452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 891.018924 B = 7943.630337 C = 8108.512972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.095 3.905 2 N -1.007 6.007 3 C 0.199 3.801 4 C 0.051 3.949 5 C -0.243 4.243 6 S 0.091 5.909 7 C 0.026 3.974 8 N -0.433 5.433 9 S 2.586 3.414 10 O -0.964 6.964 11 O -0.936 6.936 12 C -0.585 4.585 13 C 0.082 3.918 14 C -0.160 4.160 15 C -0.163 4.163 16 C -0.502 4.502 17 H 0.058 0.942 18 C 0.064 3.936 19 N -0.882 5.882 20 Si 0.895 3.105 21 H -0.280 1.280 22 H -0.286 1.286 23 H -0.275 1.275 24 H 0.051 0.949 25 H 0.073 0.927 26 H 0.068 0.932 27 H 0.101 0.899 28 H 0.094 0.906 29 H 0.177 0.823 30 H 0.199 0.801 31 H 0.116 0.884 32 H 0.115 0.885 33 H 0.026 0.974 34 H 0.093 0.907 35 H 0.034 0.966 36 H 0.036 0.964 37 H 0.096 0.904 38 H 0.028 0.972 39 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.474 17.095 -8.571 20.532 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 N -0.842 5.842 3 C 0.070 3.930 4 C -0.084 4.084 5 C -0.383 4.383 6 S 0.343 5.657 7 C -0.274 4.274 8 N -0.145 5.145 9 S 2.684 3.316 10 O -0.954 6.954 11 O -0.926 6.926 12 C -0.718 4.718 13 C 0.080 3.920 14 C -0.218 4.218 15 C -0.220 4.220 16 C -0.542 4.542 17 H 0.077 0.923 18 C -0.137 4.137 19 N -0.520 5.520 20 Si 0.722 3.278 21 H -0.206 1.206 22 H -0.212 1.212 23 H -0.200 1.200 24 H 0.070 0.930 25 H 0.092 0.908 26 H 0.086 0.914 27 H 0.119 0.881 28 H 0.112 0.888 29 H 0.194 0.806 30 H 0.216 0.784 31 H 0.135 0.865 32 H 0.133 0.867 33 H 0.045 0.955 34 H 0.112 0.888 35 H 0.053 0.947 36 H 0.055 0.945 37 H 0.115 0.885 38 H 0.047 0.953 39 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -7.048 16.708 -10.074 20.744 hybrid contribution -0.238 -0.374 2.377 2.419 sum -7.286 16.334 -7.697 19.471 Atomic orbital electron populations 1.21411 0.78992 1.02798 1.01835 1.57938 1.14876 1.21253 1.90153 1.19686 0.98219 0.85928 0.89174 1.20896 0.91600 0.96635 0.99241 1.26879 1.06717 1.07209 0.97541 1.83949 1.24840 1.44318 1.12618 1.28592 1.02071 0.98843 0.97885 1.66252 1.23035 1.22728 1.02490 1.06099 0.74039 0.72222 0.79267 1.93534 1.65407 1.61380 1.75121 1.93622 1.42461 1.82058 1.74429 1.30605 1.09642 1.10188 1.21320 1.17925 0.90899 0.85413 0.97789 1.22201 0.98914 1.04134 0.96516 1.22289 0.99393 1.03864 0.96488 1.20941 1.38413 1.04852 0.89969 0.92331 1.24943 0.94814 0.96470 0.97513 1.69820 1.36228 1.13390 1.32567 0.86570 0.77605 0.78514 0.85062 1.20561 1.21188 1.20008 0.93021 0.90790 0.91354 0.88064 0.88773 0.80604 0.78412 0.86521 0.86703 0.95542 0.88791 0.94716 0.94526 0.88535 0.95332 0.92731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.10 10.24 59.85 0.61 1.71 16 2 N -1.01 -14.57 3.10 -123.06 -0.38 -14.96 16 3 C 0.20 2.48 5.71 -5.19 -0.03 2.45 16 4 C 0.05 0.67 6.32 -84.22 -0.53 0.14 16 5 C -0.24 -2.47 11.12 29.12 0.32 -2.15 16 6 S 0.09 0.83 23.22 -107.50 -2.50 -1.67 16 7 C 0.03 0.30 12.23 51.59 0.63 0.93 16 8 N -0.43 -6.66 10.07 -11.90 -0.12 -6.78 16 9 S 2.59 50.12 4.36 -107.50 -0.47 49.65 16 10 O -0.96 -21.13 14.85 -57.54 -0.85 -21.98 16 11 O -0.94 -20.33 14.14 -57.54 -0.81 -21.14 16 12 C -0.58 -11.65 5.11 37.16 0.19 -11.46 16 13 C 0.08 2.02 0.52 -155.66 -0.08 1.94 16 14 C -0.16 -4.02 7.58 37.16 0.28 -3.73 16 15 C -0.16 -4.10 7.80 37.16 0.29 -3.81 16 16 C -0.50 -13.34 8.01 -34.44 -0.28 -13.61 16 17 H 0.06 1.51 7.75 -52.49 -0.41 1.10 16 18 C 0.06 1.73 5.09 -17.82 -0.09 1.64 16 19 N -0.88 -24.34 9.39 55.43 0.52 -23.82 16 20 Si 0.89 20.73 29.54 -169.99 -5.02 15.71 16 21 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 22 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 23 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 24 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 25 H 0.07 0.86 7.79 -51.93 -0.40 0.45 16 26 H 0.07 0.54 7.94 -51.93 -0.41 0.13 16 27 H 0.10 1.33 7.61 -51.94 -0.40 0.94 16 28 H 0.09 0.78 7.92 -51.93 -0.41 0.37 16 29 H 0.18 1.25 8.06 -52.49 -0.42 0.82 16 30 H 0.20 1.70 8.06 -52.49 -0.42 1.28 16 31 H 0.12 2.10 8.14 -51.92 -0.42 1.68 16 32 H 0.11 2.07 8.14 -51.92 -0.42 1.65 16 33 H 0.03 0.64 5.96 -51.93 -0.31 0.33 16 34 H 0.09 2.53 5.99 -51.93 -0.31 2.22 16 35 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.04 0.88 8.14 -51.93 -0.42 0.45 16 37 H 0.10 2.62 6.02 -51.93 -0.31 2.31 16 38 H 0.03 0.69 5.46 -51.93 -0.28 0.40 16 39 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 LS Contribution 337.28 15.07 5.08 5.08 Total: -1.00 -34.12 337.28 -8.57 -42.70 By element: Atomic # 1 Polarization: 8.49 SS G_CDS: -5.34 Total: 3.14 kcal Atomic # 6 Polarization: -27.27 SS G_CDS: 1.32 Total: -25.95 kcal Atomic # 7 Polarization: -45.57 SS G_CDS: 0.02 Total: -45.55 kcal Atomic # 8 Polarization: -41.45 SS G_CDS: -1.67 Total: -43.12 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.71 kcal Atomic # 16 Polarization: 50.95 SS G_CDS: -2.96 Total: 47.99 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -34.12 -8.57 -42.70 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001413282153.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.958 kcal (2) G-P(sol) polarization free energy of solvation -34.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.574 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.698 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.740 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds