Wall clock time and date at job start Tue Mar 31 2020 12:23:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 S 1.80997 * 109.46939 * 2 1 4 4 C 1.76199 * 100.00210 * 180.02562 * 3 2 1 5 5 C 1.39660 * 120.56980 * 0.23059 * 4 3 2 6 6 C 1.38171 * 118.42298 * 180.26445 * 5 4 3 7 7 C 1.38854 * 119.48670 * 359.75132 * 6 5 4 8 8 N 1.31344 * 121.14232 * 0.02562 * 7 6 5 9 9 C 1.32901 * 121.71598 * 359.97438 * 8 7 6 10 10 C 1.47651 * 119.81102 * 179.97438 * 9 8 7 11 11 O 1.21599 * 119.99967 * 179.97438 * 10 9 8 12 12 N 1.34774 * 120.00033 * 0.02562 * 10 9 8 13 13 C 1.40511 * 120.00164 * 180.02562 * 12 10 9 14 14 C 1.40670 * 126.08340 * 359.95021 * 13 12 10 15 15 N 1.30901 * 108.38421 * 179.76013 * 14 13 12 16 16 N 1.40070 * 108.41420 * 0.43868 * 15 14 13 17 17 C 1.37314 * 126.06769 * 179.81720 * 16 15 14 18 18 H 1.07998 * 120.00425 * 185.45378 * 17 16 15 19 19 C 1.38989 * 119.99795 * 5.18157 * 17 16 15 20 20 N 1.31295 * 120.00245 * 354.31613 * 19 17 16 21 21 Si 1.86803 * 120.00145 * 174.31102 * 19 17 16 22 22 H 1.48494 * 109.47248 * 94.97708 * 21 19 17 23 23 H 1.48500 * 109.47261 * 214.98192 * 21 19 17 24 24 H 1.48506 * 109.46671 * 334.98298 * 21 19 17 25 25 C 1.35703 * 126.08428 * 179.97438 * 13 12 10 26 26 H 1.09002 * 109.47718 * 60.00044 * 1 2 3 27 27 H 1.09001 * 109.47195 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47081 * 299.99303 * 1 2 3 29 29 H 1.09002 * 109.46587 * 240.00563 * 2 1 3 30 30 H 1.09001 * 109.47209 * 120.00061 * 2 1 3 31 31 H 1.08002 * 120.79243 * 359.97438 * 5 4 3 32 32 H 1.07993 * 120.26050 * 179.72366 * 6 5 4 33 33 H 1.07999 * 119.43082 * 180.02562 * 7 6 5 34 34 H 0.97007 * 120.00223 * 359.97438 * 12 10 9 35 35 H 1.07998 * 125.80666 * 0.03943 * 14 13 12 36 36 H 0.96997 * 120.00151 * 179.97438 * 20 19 17 37 37 H 1.07989 * 126.25384 * 359.97438 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1332 1.7065 0.0000 4 6 3.8712 1.4167 -0.0008 5 6 4.3741 0.1137 -0.0060 6 6 5.7445 -0.0624 -0.0008 7 6 6.5764 1.0494 0.0042 8 7 6.0833 2.2667 0.0045 9 6 4.7732 2.4899 -0.0004 10 6 4.2647 3.8761 0.0008 11 8 3.0667 4.0842 -0.0042 12 7 5.1284 4.9107 0.0062 13 6 4.6445 6.2298 0.0079 14 6 3.2919 6.6162 0.0033 15 7 3.2361 7.9240 0.0119 16 7 4.5449 8.4227 0.0121 17 6 4.9051 9.7478 0.0163 18 1 5.9451 10.0250 -0.0728 19 6 3.9307 10.7324 0.1296 20 7 2.6599 10.4026 0.1203 21 14 4.4292 12.5251 0.2954 22 1 4.4195 13.1674 -1.0434 23 1 3.4702 13.2251 1.1873 24 1 5.7943 12.6077 0.8741 25 6 5.3989 7.3579 0.0137 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5137 0.8901 29 1 1.8932 -0.5138 -0.8901 30 1 1.8933 -0.5138 0.8900 31 1 3.7076 -0.7361 -0.0093 32 1 6.1654 -1.0569 -0.0001 33 1 7.6475 0.9107 0.0078 34 1 6.0842 4.7447 0.0098 35 1 2.4438 5.9475 -0.0015 36 1 1.9799 11.0898 0.1997 37 1 6.4777 7.4046 0.0183 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001417620990.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:23:32 Heat of formation + Delta-G solvation = 91.851239 kcal Electronic energy + Delta-G solvation = -22959.060953 eV Core-core repulsion = 19444.077724 eV Total energy + Delta-G solvation = -3514.983229 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.089 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.52524 -39.58553 -38.20297 -34.28906 -33.51049 -33.13697 -32.33478 -31.54157 -30.17754 -27.80263 -25.48290 -24.56023 -23.83139 -23.32306 -21.10658 -20.53935 -19.36168 -18.06227 -17.54321 -17.03659 -16.49113 -15.72556 -15.42088 -15.24364 -15.01334 -14.80257 -14.77612 -14.20176 -13.85838 -13.67572 -13.41321 -12.98330 -12.88521 -12.75657 -12.35290 -11.76709 -11.75762 -11.65503 -11.41426 -11.24190 -10.98458 -10.55677 -10.51677 -10.41472 -10.15185 -9.84554 -9.66232 -9.13619 -8.92738 -8.76694 -8.02579 -7.46882 -6.62798 -6.53566 -4.19065 0.52294 0.92763 1.52469 2.36430 2.81059 3.02395 3.07559 3.12997 3.50426 3.58691 3.87333 3.90399 4.23021 4.50475 4.51600 4.64865 4.67816 4.70601 4.80595 4.96657 5.04387 5.12728 5.17404 5.35194 5.48583 5.57466 5.65823 5.76525 5.87441 6.29190 6.31290 6.51175 6.93037 6.99070 7.13798 7.26212 7.62896 7.89149 8.22021 8.31991 8.63692 8.85286 9.40927 9.70018 10.42650 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.022051 B = 0.002970 C = 0.002624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1269.489563 B = 9424.691292 C =10669.818190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.183 4.183 3 S 0.043 5.957 4 C -0.105 4.105 5 C -0.103 4.103 6 C -0.135 4.135 7 C 0.085 3.915 8 N -0.442 5.442 9 C 0.099 3.901 10 C 0.543 3.457 11 O -0.507 6.507 12 N -0.595 5.595 13 C -0.062 4.062 14 C -0.028 4.028 15 N -0.261 5.261 16 N -0.142 5.142 17 C -0.323 4.323 18 H 0.117 0.883 19 C 0.047 3.953 20 N -0.769 5.769 21 Si 0.934 3.066 22 H -0.271 1.271 23 H -0.276 1.276 24 H -0.263 1.263 25 C -0.079 4.079 26 H 0.065 0.935 27 H 0.066 0.934 28 H 0.065 0.935 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.141 0.859 32 H 0.140 0.860 33 H 0.163 0.837 34 H 0.407 0.593 35 H 0.178 0.822 36 H 0.275 0.725 37 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.905 -20.891 -0.015 21.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.330 4.330 3 S 0.290 5.710 4 C -0.223 4.223 5 C -0.135 4.135 6 C -0.157 4.157 7 C -0.079 4.079 8 N -0.154 5.154 9 C -0.047 4.047 10 C 0.328 3.672 11 O -0.385 6.385 12 N -0.236 5.236 13 C -0.168 4.168 14 C -0.204 4.204 15 N -0.092 5.092 16 N 0.091 4.909 17 C -0.455 4.455 18 H 0.134 0.866 19 C -0.171 4.171 20 N -0.395 5.395 21 Si 0.758 3.242 22 H -0.197 1.197 23 H -0.201 1.201 24 H -0.187 1.187 25 C -0.231 4.231 26 H 0.084 0.916 27 H 0.085 0.915 28 H 0.084 0.916 29 H 0.101 0.899 30 H 0.101 0.899 31 H 0.159 0.841 32 H 0.158 0.842 33 H 0.180 0.820 34 H 0.242 0.758 35 H 0.194 0.806 36 H 0.085 0.915 37 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 1.749 -17.812 0.002 17.897 hybrid contribution 1.786 -2.169 0.057 2.810 sum 3.535 -19.981 0.059 20.291 Atomic orbital electron populations 1.21424 0.92012 1.02399 1.03383 1.24149 1.01391 1.02753 1.04753 1.87566 0.92518 1.02777 1.88163 1.23180 1.01004 0.96083 1.02025 1.21583 0.96388 0.95227 1.00307 1.22191 0.93692 1.00809 0.99056 1.22770 1.00645 0.87063 0.97444 1.67603 1.12988 1.25280 1.09490 1.20970 0.88548 0.93549 1.01606 1.17479 0.86216 0.83138 0.80369 1.90608 1.14496 1.82329 1.51076 1.42251 1.09444 1.03418 1.68466 1.17289 0.93494 0.81989 1.23994 1.24137 0.95292 0.93439 1.07552 1.78247 0.97672 1.07548 1.25688 1.44558 1.03079 1.04269 1.39038 1.19878 0.95104 0.77633 1.52874 0.86591 1.25644 0.94740 1.01176 0.95507 1.70223 0.99726 1.34451 1.35107 0.85825 0.79152 0.80473 0.78779 1.19681 1.20054 1.18745 1.21276 0.95539 0.86657 1.19580 0.91574 0.91468 0.91571 0.89947 0.89949 0.84121 0.84218 0.82004 0.75776 0.80554 0.91480 0.83557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.11 9.92 37.16 0.37 -0.74 16 2 C -0.18 -1.69 4.90 37.16 0.18 -1.50 16 3 S 0.04 0.61 18.97 -107.50 -2.04 -1.43 16 4 C -0.11 -1.47 6.17 -38.32 -0.24 -1.70 16 5 C -0.10 -1.04 9.27 -39.08 -0.36 -1.40 16 6 C -0.14 -1.15 10.10 -39.38 -0.40 -1.55 16 7 C 0.09 0.85 11.17 -17.53 -0.20 0.66 16 8 N -0.44 -6.14 9.53 -9.66 -0.09 -6.23 16 9 C 0.10 1.58 6.76 -82.83 -0.56 1.02 16 10 C 0.54 10.63 7.75 -12.42 -0.10 10.54 16 11 O -0.51 -11.04 10.89 5.28 0.06 -10.99 16 12 N -0.59 -11.83 5.45 -10.91 -0.06 -11.89 16 13 C -0.06 -1.49 6.90 -83.87 -0.58 -2.07 16 14 C -0.03 -0.76 10.85 -17.03 -0.18 -0.95 16 15 N -0.26 -7.69 10.41 30.80 0.32 -7.37 16 16 N -0.14 -3.97 3.74 -11.41 -0.04 -4.01 16 17 C -0.32 -8.65 10.24 -14.82 -0.15 -8.81 16 18 H 0.12 2.78 7.84 -52.49 -0.41 2.37 16 19 C 0.05 1.22 5.50 -17.50 -0.10 1.12 16 20 N -0.77 -21.67 11.83 55.50 0.66 -21.02 16 21 Si 0.93 19.12 29.56 -169.99 -5.02 14.10 16 22 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 23 H -0.28 -5.60 7.11 56.52 0.40 -5.20 16 24 H -0.26 -5.16 7.11 56.52 0.40 -4.76 16 25 C -0.08 -1.93 11.50 -16.38 -0.19 -2.12 16 26 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 27 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 29 H 0.08 0.66 7.56 -51.92 -0.39 0.27 16 30 H 0.08 0.66 7.58 -51.92 -0.39 0.27 16 31 H 0.14 1.05 5.66 -52.49 -0.30 0.76 16 32 H 0.14 0.68 8.06 -52.49 -0.42 0.25 16 33 H 0.16 1.07 8.06 -52.49 -0.42 0.64 16 34 H 0.41 6.95 8.15 -40.82 -0.33 6.62 16 35 H 0.18 4.65 5.91 -52.49 -0.31 4.34 16 36 H 0.27 7.07 8.31 -40.82 -0.34 6.73 16 37 H 0.15 2.99 8.06 -52.49 -0.42 2.57 16 LS Contribution 332.34 15.07 5.01 5.01 Total: -1.00 -33.69 332.34 -7.52 -41.21 By element: Atomic # 1 Polarization: 13.93 SS G_CDS: -3.81 Total: 10.12 kcal Atomic # 6 Polarization: -5.00 SS G_CDS: -2.50 Total: -7.50 kcal Atomic # 7 Polarization: -51.30 SS G_CDS: 0.78 Total: -50.52 kcal Atomic # 8 Polarization: -11.04 SS G_CDS: 0.06 Total: -10.99 kcal Atomic # 14 Polarization: 19.12 SS G_CDS: -5.02 Total: 14.10 kcal Atomic # 16 Polarization: 0.61 SS G_CDS: -2.04 Total: -1.43 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -33.69 -7.52 -41.21 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001417620990.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.058 kcal (2) G-P(sol) polarization free energy of solvation -33.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.207 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds