Wall clock time and date at job start Tue Mar 31 2020 12:23:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 S 1.80997 * 109.46939 * 2 1 4 4 C 1.76199 * 100.00210 * 180.02562 * 3 2 1 5 5 C 1.39660 * 120.56980 * 0.23059 * 4 3 2 6 6 C 1.38171 * 118.42298 * 180.26445 * 5 4 3 7 7 C 1.38854 * 119.48670 * 359.75132 * 6 5 4 8 8 N 1.31344 * 121.14232 * 0.02562 * 7 6 5 9 9 C 1.32901 * 121.71598 * 359.97438 * 8 7 6 10 10 C 1.47651 * 119.81102 * 179.97438 * 9 8 7 11 11 O 1.21599 * 119.99967 * 179.97438 * 10 9 8 12 12 N 1.34774 * 120.00033 * 0.02562 * 10 9 8 13 13 C 1.40511 * 120.00164 * 180.02562 * 12 10 9 14 14 C 1.40670 * 126.08340 * 359.95021 * 13 12 10 15 15 N 1.30901 * 108.38421 * 179.76013 * 14 13 12 16 16 N 1.40070 * 108.41420 * 0.43868 * 15 14 13 17 17 C 1.37314 * 126.06769 * 179.81720 * 16 15 14 18 18 H 1.07998 * 120.00425 * 185.45378 * 17 16 15 19 19 C 1.38989 * 119.99795 * 5.18157 * 17 16 15 20 20 N 1.31295 * 120.00245 * 354.31613 * 19 17 16 21 21 Si 1.86803 * 120.00145 * 174.31102 * 19 17 16 22 22 H 1.48494 * 109.47248 * 94.97708 * 21 19 17 23 23 H 1.48500 * 109.47261 * 214.98192 * 21 19 17 24 24 H 1.48506 * 109.46671 * 334.98298 * 21 19 17 25 25 C 1.35703 * 126.08428 * 179.97438 * 13 12 10 26 26 H 1.09002 * 109.47718 * 60.00044 * 1 2 3 27 27 H 1.09001 * 109.47195 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47081 * 299.99303 * 1 2 3 29 29 H 1.09002 * 109.46587 * 240.00563 * 2 1 3 30 30 H 1.09001 * 109.47209 * 120.00061 * 2 1 3 31 31 H 1.08002 * 120.79243 * 359.97438 * 5 4 3 32 32 H 1.07993 * 120.26050 * 179.72366 * 6 5 4 33 33 H 1.07999 * 119.43082 * 180.02562 * 7 6 5 34 34 H 0.97007 * 120.00223 * 359.97438 * 12 10 9 35 35 H 1.07998 * 125.80666 * 0.03943 * 14 13 12 36 36 H 0.96997 * 120.00151 * 179.97438 * 20 19 17 37 37 H 1.07989 * 126.25384 * 359.97438 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1332 1.7065 0.0000 4 6 3.8712 1.4167 -0.0008 5 6 4.3741 0.1137 -0.0060 6 6 5.7445 -0.0624 -0.0008 7 6 6.5764 1.0494 0.0042 8 7 6.0833 2.2667 0.0045 9 6 4.7732 2.4899 -0.0004 10 6 4.2647 3.8761 0.0008 11 8 3.0667 4.0842 -0.0042 12 7 5.1284 4.9107 0.0062 13 6 4.6445 6.2298 0.0079 14 6 3.2919 6.6162 0.0033 15 7 3.2361 7.9240 0.0119 16 7 4.5449 8.4227 0.0121 17 6 4.9051 9.7478 0.0163 18 1 5.9451 10.0250 -0.0728 19 6 3.9307 10.7324 0.1296 20 7 2.6599 10.4026 0.1203 21 14 4.4292 12.5251 0.2954 22 1 4.4195 13.1674 -1.0434 23 1 3.4702 13.2251 1.1873 24 1 5.7943 12.6077 0.8741 25 6 5.3989 7.3579 0.0137 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5137 0.8901 29 1 1.8932 -0.5138 -0.8901 30 1 1.8933 -0.5138 0.8900 31 1 3.7076 -0.7361 -0.0093 32 1 6.1654 -1.0569 -0.0001 33 1 7.6475 0.9107 0.0078 34 1 6.0842 4.7447 0.0098 35 1 2.4438 5.9475 -0.0015 36 1 1.9799 11.0898 0.1997 37 1 6.4777 7.4046 0.0183 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001417620990.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:23:31 Heat of formation + Delta-G solvation = 68.701168 kcal Electronic energy + Delta-G solvation = -22960.064816 eV Core-core repulsion = 19444.077724 eV Total energy + Delta-G solvation = -3515.987092 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.089 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.88969 -41.17362 -39.69448 -36.01107 -35.04196 -34.23917 -33.20335 -32.60160 -32.13393 -29.65250 -27.09014 -25.90596 -24.68968 -24.29450 -22.87743 -22.07650 -21.21598 -19.55568 -18.93438 -18.24472 -17.55649 -17.41770 -16.79976 -16.46022 -16.43571 -15.91632 -15.72206 -15.58562 -15.25766 -15.14473 -14.79732 -14.48973 -14.40144 -13.61141 -13.49245 -13.34234 -13.09285 -12.92717 -12.84704 -12.51746 -12.48548 -12.07463 -11.87564 -11.65617 -11.44186 -11.02347 -10.84052 -10.76308 -10.54710 -10.17342 -10.10606 -8.68604 -8.47832 -8.38156 -6.24188 -0.46636 0.10175 0.56744 1.24011 1.39935 1.48868 1.56238 1.59481 1.86624 2.01610 2.24465 2.44106 2.83232 2.84437 3.08087 3.28650 3.74085 3.83693 3.93838 4.00814 4.07032 4.30241 4.42332 4.50227 4.51869 4.59444 4.80089 4.84800 4.88866 5.00030 5.00789 5.08336 5.21986 5.27862 5.43235 5.54832 5.94879 6.28513 6.56888 6.71502 6.83497 7.27793 7.44981 7.66022 8.52057 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.022051 B = 0.002970 C = 0.002624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1269.489563 B = 9424.691292 C =10669.818190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.156 4.156 3 S -0.053 6.053 4 C -0.106 4.106 5 C -0.101 4.101 6 C -0.107 4.107 7 C 0.083 3.917 8 N -0.461 5.461 9 C 0.060 3.940 10 C 0.540 3.460 11 O -0.537 6.537 12 N -0.597 5.597 13 C -0.047 4.047 14 C -0.054 4.054 15 N -0.308 5.308 16 N -0.165 5.165 17 C -0.354 4.354 18 H 0.141 0.859 19 C -0.006 4.006 20 N -0.823 5.823 21 Si 1.021 2.979 22 H -0.264 1.264 23 H -0.276 1.276 24 H -0.244 1.244 25 C -0.080 4.080 26 H 0.055 0.945 27 H 0.097 0.903 28 H 0.055 0.945 29 H 0.101 0.899 30 H 0.101 0.899 31 H 0.173 0.827 32 H 0.192 0.808 33 H 0.202 0.798 34 H 0.420 0.580 35 H 0.170 0.830 36 H 0.277 0.723 37 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.758 -24.002 0.076 24.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.303 4.303 3 S 0.194 5.806 4 C -0.223 4.223 5 C -0.133 4.133 6 C -0.128 4.128 7 C -0.082 4.082 8 N -0.173 5.173 9 C -0.083 4.083 10 C 0.326 3.674 11 O -0.416 6.416 12 N -0.241 5.241 13 C -0.154 4.154 14 C -0.229 4.229 15 N -0.140 5.140 16 N 0.066 4.934 17 C -0.485 4.485 18 H 0.158 0.842 19 C -0.218 4.218 20 N -0.451 5.451 21 Si 0.839 3.161 22 H -0.189 1.189 23 H -0.201 1.201 24 H -0.167 1.167 25 C -0.230 4.230 26 H 0.074 0.926 27 H 0.115 0.885 28 H 0.074 0.926 29 H 0.120 0.880 30 H 0.120 0.880 31 H 0.190 0.810 32 H 0.209 0.791 33 H 0.219 0.781 34 H 0.258 0.742 35 H 0.186 0.814 36 H 0.087 0.913 37 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges 4.627 -20.968 0.089 21.472 hybrid contribution 0.959 -1.607 0.015 1.872 sum 5.586 -22.575 0.105 23.256 Atomic orbital electron populations 1.21479 0.91511 1.03891 1.02491 1.24107 1.01497 0.98233 1.06506 1.87833 0.95138 1.08917 1.88711 1.23205 0.99479 0.97266 1.02385 1.22055 0.97929 0.94214 0.99109 1.22791 0.92561 1.02660 0.94814 1.23581 1.02806 0.86194 0.95591 1.67529 1.11786 1.27739 1.10220 1.20353 0.90073 0.91660 1.06177 1.18234 0.85848 0.84730 0.78556 1.90610 1.15912 1.83620 1.51447 1.42214 1.10285 1.01917 1.69669 1.17369 0.92341 0.84039 1.21612 1.24154 0.96671 0.93046 1.09046 1.78134 0.99649 1.08720 1.27500 1.44849 1.02941 1.05409 1.40219 1.20643 0.96622 0.77712 1.53564 0.84173 1.26917 0.94301 1.06478 0.94118 1.70404 1.01382 1.36361 1.36927 0.84563 0.79415 0.73176 0.78925 1.18870 1.20102 1.16664 1.21947 0.97114 0.85825 1.18122 0.92566 0.88472 0.92570 0.88017 0.88031 0.81001 0.79072 0.78139 0.74219 0.81362 0.91326 0.79666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.06 9.92 71.98 0.71 -1.35 16 2 C -0.16 -2.55 4.90 71.98 0.35 -2.19 16 3 S -0.05 -1.54 18.97 -56.49 -1.07 -2.61 16 4 C -0.11 -2.85 6.17 23.09 0.14 -2.70 16 5 C -0.10 -1.65 9.27 22.60 0.21 -1.44 16 6 C -0.11 -1.21 10.10 22.40 0.23 -0.98 16 7 C 0.08 1.32 11.17 84.91 0.95 2.26 16 8 N -0.46 -12.00 9.53 -184.48 -1.76 -13.76 16 9 C 0.06 1.94 6.76 41.94 0.28 2.22 16 10 C 0.54 22.16 7.75 86.73 0.67 22.83 16 11 O -0.54 -25.19 10.89 -4.03 -0.04 -25.24 16 12 N -0.60 -24.55 5.45 -306.68 -1.67 -26.22 16 13 C -0.05 -2.37 6.90 37.76 0.26 -2.11 16 14 C -0.05 -3.11 10.85 85.43 0.93 -2.18 16 15 N -0.31 -19.32 10.41 -56.46 -0.59 -19.91 16 16 N -0.17 -9.58 3.74 -190.01 -0.71 -10.29 16 17 C -0.35 -19.37 10.24 84.01 0.86 -18.51 16 18 H 0.14 6.66 7.84 -2.91 -0.02 6.63 16 19 C -0.01 -0.34 5.50 84.95 0.47 0.13 16 20 N -0.82 -48.62 11.83 21.66 0.26 -48.36 16 21 Si 1.02 39.51 29.56 68.60 2.03 41.53 16 22 H -0.26 -9.80 7.11 99.48 0.71 -9.10 16 23 H -0.28 -10.57 7.11 99.48 0.71 -9.86 16 24 H -0.24 -8.56 7.11 99.48 0.71 -7.85 16 25 C -0.08 -3.95 11.50 83.38 0.96 -2.99 16 26 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 27 H 0.10 0.94 8.14 -2.39 -0.02 0.92 16 28 H 0.06 0.97 8.14 -2.38 -0.02 0.95 16 29 H 0.10 1.29 7.56 -2.39 -0.02 1.27 16 30 H 0.10 1.29 7.58 -2.39 -0.02 1.27 16 31 H 0.17 1.66 5.66 -2.91 -0.02 1.64 16 32 H 0.19 0.30 8.06 -2.91 -0.02 0.27 16 33 H 0.20 1.52 8.06 -2.91 -0.02 1.49 16 34 H 0.42 14.51 8.15 -92.70 -0.76 13.75 16 35 H 0.17 9.75 5.91 -2.91 -0.02 9.73 16 36 H 0.28 14.99 8.31 -92.71 -0.77 14.22 16 37 H 0.19 7.40 8.06 -2.92 -0.02 7.38 16 Total: -1.00 -82.06 332.34 3.84 -78.22 By element: Atomic # 1 Polarization: 33.30 SS G_CDS: 0.37 Total: 33.67 kcal Atomic # 6 Polarization: -14.05 SS G_CDS: 7.02 Total: -7.02 kcal Atomic # 7 Polarization: -114.08 SS G_CDS: -4.47 Total: -118.56 kcal Atomic # 8 Polarization: -25.19 SS G_CDS: -0.04 Total: -25.24 kcal Atomic # 14 Polarization: 39.51 SS G_CDS: 2.03 Total: 41.53 kcal Atomic # 16 Polarization: -1.54 SS G_CDS: -1.07 Total: -2.61 kcal Total: -82.06 3.84 -78.22 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001417620990.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.921 kcal (2) G-P(sol) polarization free energy of solvation -82.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.219 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds