Wall clock time and date at job start Tue Mar 31 2020 12:03:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08996 * 109.47745 * 2 1 4 4 C 1.50705 * 109.47115 * 240.00215 * 2 1 3 5 5 H 1.07999 * 119.99835 * 240.00678 * 4 2 1 6 6 C 1.37878 * 119.99843 * 59.99705 * 4 2 1 7 7 N 1.31510 * 119.99871 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99719 * 180.02562 * 6 4 2 9 9 H 1.48503 * 109.47029 * 90.00362 * 8 6 4 10 10 H 1.48498 * 109.47070 * 210.00078 * 8 6 4 11 11 H 1.48501 * 109.47043 * 330.00312 * 8 6 4 12 12 N 1.46499 * 109.47147 * 120.00217 * 2 1 3 13 13 C 1.34776 * 120.00045 * 274.99756 * 12 2 1 14 14 O 1.21586 * 119.99810 * 359.97438 * 13 12 2 15 15 N 1.34773 * 119.99902 * 179.97438 * 13 12 2 16 16 C 1.39796 * 120.00201 * 184.59392 * 15 13 12 17 17 C 1.39009 * 119.93192 * 144.86939 * 16 15 13 18 18 C 1.37802 * 120.07239 * 180.25927 * 17 16 15 19 19 C 1.39607 * 119.92775 * 359.49310 * 18 17 16 20 20 C 1.47830 * 120.06927 * 180.23534 * 19 18 17 21 21 N 1.30646 * 126.22821 * 179.97438 * 20 19 18 22 22 N 1.26247 * 116.23119 * 179.81384 * 21 20 19 23 23 C 1.29348 * 117.91240 * 0.49020 * 22 21 20 24 24 S 1.71274 * 108.92468 * 359.73793 * 23 22 21 25 25 C 1.39596 * 119.85603 * 0.48368 * 19 18 17 26 26 C 1.37808 * 119.93197 * 359.77499 * 25 19 18 27 27 H 1.08991 * 109.47314 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.46941 * 299.99999 * 1 2 3 29 29 H 1.08999 * 109.46991 * 59.99307 * 1 2 3 30 30 H 0.97004 * 119.99583 * 180.02562 * 7 6 4 31 31 H 0.97005 * 119.99817 * 94.99879 * 12 2 1 32 32 H 0.97009 * 120.00085 * 4.59421 * 15 13 12 33 33 H 1.08005 * 119.96483 * 359.97438 * 17 16 15 34 34 H 1.08005 * 120.03869 * 179.72507 * 18 17 16 35 35 H 1.08005 * 125.53497 * 179.73054 * 23 22 21 36 36 H 1.07999 * 120.03463 * 179.79096 * 25 19 18 37 37 H 1.07996 * 119.96445 * 179.97438 * 26 25 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.6992 -0.2393 -2.4828 7 7 0.9435 0.8302 -2.6033 8 14 2.3213 -1.1203 -4.0080 9 1 1.3426 -2.1616 -4.4120 10 1 2.4865 -0.1413 -5.1123 11 1 3.6292 -1.7583 -3.7123 12 7 2.0183 -0.6906 1.1961 13 6 2.1471 -0.0183 2.3571 14 8 1.8584 1.1615 2.4116 15 7 2.5959 -0.6539 3.4576 16 6 2.6387 0.0168 4.6835 17 6 2.3768 -0.6736 5.8613 18 6 2.4129 -0.0142 7.0708 19 6 2.7234 1.3462 7.1134 20 6 2.7682 2.0555 8.4097 21 7 3.0444 3.3198 8.5889 22 7 3.0260 3.7312 9.7823 23 6 2.7490 2.8769 10.7131 24 16 2.4658 1.3471 9.9967 25 6 2.9864 2.0365 5.9289 26 6 2.9434 1.3725 4.7221 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 0.7088 1.1614 -3.4844 31 1 2.2490 -1.6319 1.1525 32 1 2.8892 -1.5767 3.3991 33 1 2.1401 -1.7269 5.8280 34 1 2.2050 -0.5501 7.9851 35 1 2.7037 3.0930 11.7704 36 1 3.2236 3.0897 5.9582 37 1 3.1463 1.9061 3.8053 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001425616503.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:03:57 Heat of formation + Delta-G solvation = 65.788573 kcal Electronic energy + Delta-G solvation = -22545.337398 eV Core-core repulsion = 19029.224007 eV Total energy + Delta-G solvation = -3516.113391 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.089 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.31824 -40.34707 -38.58929 -35.40285 -34.46665 -32.69298 -32.06236 -31.12433 -29.77062 -28.51223 -26.39093 -25.30158 -23.24608 -23.17002 -21.30803 -20.47499 -19.94529 -19.33231 -18.26540 -17.71047 -17.11072 -16.04245 -15.80189 -15.43404 -15.08609 -14.79301 -14.52820 -14.22025 -13.95075 -13.63160 -13.54468 -13.23219 -13.02279 -12.50834 -12.38672 -11.83835 -11.49662 -11.16300 -11.07678 -10.90740 -10.75264 -10.71439 -10.54757 -10.37422 -10.28341 -10.13791 -9.76917 -9.52079 -9.10454 -9.04511 -8.62675 -8.17958 -7.81504 -6.17478 -4.27128 -0.18538 0.58297 1.02709 1.27308 1.31632 2.42670 3.00724 3.21115 3.28646 3.30633 3.52260 3.69789 3.87383 4.27632 4.34142 4.68172 4.74256 4.78982 4.91193 5.10350 5.15292 5.21716 5.44464 5.54405 5.89016 6.04444 6.26839 6.34731 6.51689 6.73146 6.91381 6.98957 7.03223 7.13816 7.36423 7.56224 7.74976 7.91080 8.09363 8.28916 8.63500 8.75850 9.11080 9.40791 10.88501 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.041772 B = 0.002167 C = 0.002119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 670.137673 B =12918.685429 C =13211.791371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.280 3.720 3 H 0.051 0.949 4 C -0.535 4.535 5 H 0.061 0.939 6 C 0.066 3.934 7 N -0.882 5.882 8 Si 0.903 3.097 9 H -0.279 1.279 10 H -0.285 1.285 11 H -0.274 1.274 12 N -0.716 5.716 13 C 0.691 3.309 14 O -0.577 6.577 15 N -0.695 5.695 16 C 0.211 3.789 17 C -0.157 4.157 18 C -0.068 4.068 19 C -0.073 4.073 20 C 0.085 3.915 21 N -0.262 5.262 22 N -0.259 5.259 23 C -0.042 4.042 24 S 0.116 5.884 25 C -0.042 4.042 26 C -0.125 4.125 27 H 0.026 0.974 28 H 0.015 0.985 29 H 0.091 0.909 30 H 0.265 0.735 31 H 0.387 0.613 32 H 0.405 0.595 33 H 0.133 0.867 34 H 0.126 0.874 35 H 0.214 0.786 36 H 0.138 0.862 37 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.419 -5.172 23.675 24.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.178 3.822 3 H 0.068 0.932 4 C -0.574 4.574 5 H 0.080 0.920 6 C -0.137 4.137 7 N -0.519 5.519 8 Si 0.731 3.269 9 H -0.205 1.205 10 H -0.210 1.210 11 H -0.199 1.199 12 N -0.367 5.367 13 C 0.392 3.608 14 O -0.455 6.455 15 N -0.343 5.343 16 C 0.112 3.888 17 C -0.178 4.178 18 C -0.089 4.089 19 C -0.079 4.079 20 C -0.190 4.190 21 N -0.099 5.099 22 N -0.095 5.095 23 C -0.342 4.342 24 S 0.360 5.640 25 C -0.064 4.064 26 C -0.146 4.146 27 H 0.045 0.955 28 H 0.035 0.965 29 H 0.110 0.890 30 H 0.075 0.925 31 H 0.219 0.781 32 H 0.241 0.759 33 H 0.151 0.849 34 H 0.144 0.856 35 H 0.230 0.770 36 H 0.156 0.844 37 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 3.106 -3.582 23.456 23.930 hybrid contribution 0.423 -1.362 -0.680 1.580 sum 3.529 -4.944 22.775 23.572 Atomic orbital electron populations 1.22108 0.98443 0.99145 1.01030 1.18723 0.90919 0.93793 0.78750 0.93152 1.21184 1.32678 1.13329 0.90189 0.92047 1.24886 0.94805 0.94948 0.99076 1.69900 1.35699 1.22291 1.24009 0.86422 0.79125 0.79253 0.82128 1.20539 1.21029 1.19867 1.45903 1.68221 1.13385 1.09149 1.16179 0.78728 0.85540 0.80400 1.90892 1.56792 1.13968 1.83810 1.42940 1.68075 1.16515 1.06724 1.17793 0.94057 0.92366 0.84553 1.20731 1.05356 1.00824 0.90911 1.20832 0.98093 0.92230 0.97779 1.17532 1.09216 0.93033 0.88148 1.28301 1.00378 0.92806 0.97519 1.71940 1.16652 1.09603 1.11724 1.70986 1.13805 1.30278 0.94438 1.30225 1.05175 0.92548 1.06213 1.84661 1.64244 1.13958 1.01181 1.21180 0.94910 1.00292 0.90034 1.21474 1.00168 0.93823 0.99130 0.95483 0.96542 0.89031 0.92474 0.78056 0.75923 0.84881 0.85603 0.76986 0.84424 0.82810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.61 9.26 37.16 0.34 -3.26 16 2 C 0.28 6.86 2.56 -69.08 -0.18 6.69 16 3 H 0.05 1.43 7.58 -51.93 -0.39 1.04 16 4 C -0.54 -13.69 8.73 -34.44 -0.30 -13.99 16 5 H 0.06 1.49 7.74 -52.49 -0.41 1.09 16 6 C 0.07 1.74 5.30 -17.82 -0.09 1.65 16 7 N -0.88 -24.33 11.32 55.43 0.63 -23.70 16 8 Si 0.90 20.15 29.54 -169.99 -5.02 15.13 16 9 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 10 H -0.28 -6.39 7.11 56.52 0.40 -5.98 16 11 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 12 N -0.72 -13.98 5.07 -59.81 -0.30 -14.28 16 13 C 0.69 13.05 8.37 -86.92 -0.73 12.32 16 14 O -0.58 -13.15 13.43 5.29 0.07 -13.08 16 15 N -0.70 -9.53 5.33 -14.19 -0.08 -9.60 16 16 C 0.21 2.82 6.30 -83.65 -0.53 2.30 16 17 C -0.16 -1.62 9.95 -39.46 -0.39 -2.01 16 18 C -0.07 -0.67 9.61 -39.23 -0.38 -1.04 16 19 C -0.07 -0.87 5.87 -104.96 -0.62 -1.49 16 20 C 0.09 0.99 7.45 -14.13 -0.11 0.89 16 21 N -0.26 -3.59 11.34 33.05 0.37 -3.22 16 22 N -0.26 -3.23 11.56 29.45 0.34 -2.89 16 23 C -0.04 -0.35 12.38 51.72 0.64 0.29 16 24 S 0.12 0.90 22.35 -107.50 -2.40 -1.50 16 25 C -0.04 -0.56 9.68 -39.23 -0.38 -0.94 16 26 C -0.13 -1.85 8.67 -39.45 -0.34 -2.19 16 27 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 28 H 0.02 0.38 8.14 -51.93 -0.42 -0.05 16 29 H 0.09 2.43 6.07 -51.93 -0.32 2.11 16 30 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 31 H 0.39 6.33 8.56 -40.82 -0.35 5.98 16 32 H 0.41 4.03 8.84 -40.82 -0.36 3.67 16 33 H 0.13 1.00 8.06 -52.48 -0.42 0.58 16 34 H 0.13 0.90 7.36 -52.48 -0.39 0.51 16 35 H 0.21 0.85 8.06 -52.48 -0.42 0.42 16 36 H 0.14 1.80 7.85 -52.49 -0.41 1.38 16 37 H 0.15 2.64 6.21 -52.49 -0.33 2.31 16 LS Contribution 336.31 15.07 5.07 5.07 Total: -1.00 -32.23 336.31 -8.15 -40.38 By element: Atomic # 1 Polarization: 12.28 SS G_CDS: -3.77 Total: 8.51 kcal Atomic # 6 Polarization: 2.26 SS G_CDS: -3.06 Total: -0.80 kcal Atomic # 7 Polarization: -54.66 SS G_CDS: 0.96 Total: -53.70 kcal Atomic # 8 Polarization: -13.15 SS G_CDS: 0.07 Total: -13.08 kcal Atomic # 14 Polarization: 20.15 SS G_CDS: -5.02 Total: 15.13 kcal Atomic # 16 Polarization: 0.90 SS G_CDS: -2.40 Total: -1.50 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -32.23 -8.15 -40.38 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001425616503.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.165 kcal (2) G-P(sol) polarization free energy of solvation -32.225 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.376 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds