Wall clock time and date at job start Tue Mar 31 2020 12:03:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08996 * 109.47745 * 2 1 4 4 C 1.50705 * 109.47115 * 240.00215 * 2 1 3 5 5 H 1.07999 * 119.99835 * 240.00678 * 4 2 1 6 6 C 1.37878 * 119.99843 * 59.99705 * 4 2 1 7 7 N 1.31510 * 119.99871 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99719 * 180.02562 * 6 4 2 9 9 H 1.48503 * 109.47029 * 90.00362 * 8 6 4 10 10 H 1.48498 * 109.47070 * 210.00078 * 8 6 4 11 11 H 1.48501 * 109.47043 * 330.00312 * 8 6 4 12 12 N 1.46499 * 109.47147 * 120.00217 * 2 1 3 13 13 C 1.34776 * 120.00045 * 274.99756 * 12 2 1 14 14 O 1.21586 * 119.99810 * 359.97438 * 13 12 2 15 15 N 1.34773 * 119.99902 * 179.97438 * 13 12 2 16 16 C 1.39796 * 120.00201 * 184.59392 * 15 13 12 17 17 C 1.39009 * 119.93192 * 144.86939 * 16 15 13 18 18 C 1.37802 * 120.07239 * 180.25927 * 17 16 15 19 19 C 1.39607 * 119.92775 * 359.49310 * 18 17 16 20 20 C 1.47830 * 120.06927 * 180.23534 * 19 18 17 21 21 N 1.30646 * 126.22821 * 179.97438 * 20 19 18 22 22 N 1.26247 * 116.23119 * 179.81384 * 21 20 19 23 23 C 1.29348 * 117.91240 * 0.49020 * 22 21 20 24 24 S 1.71274 * 108.92468 * 359.73793 * 23 22 21 25 25 C 1.39596 * 119.85603 * 0.48368 * 19 18 17 26 26 C 1.37808 * 119.93197 * 359.77499 * 25 19 18 27 27 H 1.08991 * 109.47314 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.46941 * 299.99999 * 1 2 3 29 29 H 1.08999 * 109.46991 * 59.99307 * 1 2 3 30 30 H 0.97004 * 119.99583 * 180.02562 * 7 6 4 31 31 H 0.97005 * 119.99817 * 94.99879 * 12 2 1 32 32 H 0.97009 * 120.00085 * 4.59421 * 15 13 12 33 33 H 1.08005 * 119.96483 * 359.97438 * 17 16 15 34 34 H 1.08005 * 120.03869 * 179.72507 * 18 17 16 35 35 H 1.08005 * 125.53497 * 179.73054 * 23 22 21 36 36 H 1.07999 * 120.03463 * 179.79096 * 25 19 18 37 37 H 1.07996 * 119.96445 * 179.97438 * 26 25 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.6992 -0.2393 -2.4828 7 7 0.9435 0.8302 -2.6033 8 14 2.3213 -1.1203 -4.0080 9 1 1.3426 -2.1616 -4.4120 10 1 2.4865 -0.1413 -5.1123 11 1 3.6292 -1.7583 -3.7123 12 7 2.0183 -0.6906 1.1961 13 6 2.1471 -0.0183 2.3571 14 8 1.8584 1.1615 2.4116 15 7 2.5959 -0.6539 3.4576 16 6 2.6387 0.0168 4.6835 17 6 2.3768 -0.6736 5.8613 18 6 2.4129 -0.0142 7.0708 19 6 2.7234 1.3462 7.1134 20 6 2.7682 2.0555 8.4097 21 7 3.0444 3.3198 8.5889 22 7 3.0260 3.7312 9.7823 23 6 2.7490 2.8769 10.7131 24 16 2.4658 1.3471 9.9967 25 6 2.9864 2.0365 5.9289 26 6 2.9434 1.3725 4.7221 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 0.7088 1.1614 -3.4844 31 1 2.2490 -1.6319 1.1525 32 1 2.8892 -1.5767 3.3991 33 1 2.1401 -1.7269 5.8280 34 1 2.2050 -0.5501 7.9851 35 1 2.7037 3.0930 11.7704 36 1 3.2236 3.0897 5.9582 37 1 3.1463 1.9061 3.8053 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001425616503.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:03:56 Heat of formation + Delta-G solvation = 42.823520 kcal Electronic energy + Delta-G solvation = -22546.333238 eV Core-core repulsion = 19029.224007 eV Total energy + Delta-G solvation = -3517.109231 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.089 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.14376 -41.61953 -39.78330 -36.99295 -35.91086 -34.40831 -33.14573 -32.08612 -31.11437 -29.89867 -27.36933 -27.21668 -24.38827 -24.18636 -22.80584 -21.58475 -21.30068 -20.18539 -19.69491 -18.86479 -18.05027 -17.80977 -16.89482 -16.64880 -16.56974 -16.00061 -15.75433 -15.56522 -15.08762 -14.82192 -14.41976 -14.36838 -14.29039 -14.07560 -13.72785 -13.36717 -12.99454 -12.89768 -12.71673 -12.44286 -12.28137 -12.13411 -11.89695 -11.51094 -11.30029 -11.15387 -11.08992 -10.89822 -10.64361 -10.59453 -10.01579 -9.82912 -8.92927 -8.16820 -6.34075 -0.96231 -0.12119 0.30928 0.36822 0.38483 1.46298 1.47260 1.56627 1.58494 1.73726 2.16501 2.42731 2.79792 2.91628 3.14042 3.41885 3.72959 3.83991 3.93421 4.04613 4.29376 4.42974 4.50984 4.55893 4.75315 4.93587 4.97709 5.10163 5.11719 5.26253 5.36814 5.40002 5.47406 5.60337 5.66703 5.84795 5.93133 6.10017 6.24583 6.73865 7.21973 7.34680 7.52463 7.65945 8.89564 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.041772 B = 0.002167 C = 0.002119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 670.137673 B =12918.685429 C =13211.791371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.288 3.712 3 H -0.001 1.001 4 C -0.544 4.544 5 H 0.076 0.924 6 C 0.013 3.987 7 N -0.918 5.918 8 Si 0.974 3.026 9 H -0.271 1.271 10 H -0.289 1.289 11 H -0.263 1.263 12 N -0.711 5.711 13 C 0.691 3.309 14 O -0.623 6.623 15 N -0.673 5.673 16 C 0.186 3.814 17 C -0.134 4.134 18 C -0.058 4.058 19 C -0.070 4.070 20 C 0.047 3.953 21 N -0.299 5.299 22 N -0.306 5.306 23 C -0.033 4.033 24 S 0.205 5.795 25 C -0.058 4.058 26 C -0.146 4.146 27 H 0.042 0.958 28 H 0.010 0.990 29 H 0.066 0.934 30 H 0.265 0.735 31 H 0.406 0.594 32 H 0.427 0.573 33 H 0.174 0.826 34 H 0.165 0.835 35 H 0.255 0.745 36 H 0.124 0.876 37 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.541 -8.753 26.533 28.163 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.184 3.816 3 H 0.017 0.983 4 C -0.583 4.583 5 H 0.094 0.906 6 C -0.187 4.187 7 N -0.556 5.556 8 Si 0.799 3.201 9 H -0.196 1.196 10 H -0.215 1.215 11 H -0.187 1.187 12 N -0.364 5.364 13 C 0.391 3.609 14 O -0.503 6.503 15 N -0.322 5.322 16 C 0.088 3.912 17 C -0.155 4.155 18 C -0.079 4.079 19 C -0.075 4.075 20 C -0.228 4.228 21 N -0.137 5.137 22 N -0.141 5.141 23 C -0.331 4.331 24 S 0.449 5.551 25 C -0.081 4.081 26 C -0.167 4.167 27 H 0.061 0.939 28 H 0.029 0.971 29 H 0.085 0.915 30 H 0.074 0.926 31 H 0.241 0.759 32 H 0.266 0.734 33 H 0.191 0.809 34 H 0.182 0.818 35 H 0.271 0.729 36 H 0.142 0.858 37 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 3.260 -7.231 26.374 27.541 hybrid contribution 0.388 -0.208 -1.269 1.343 sum 3.648 -7.439 25.105 26.437 Atomic orbital electron populations 1.21921 0.98381 0.99526 0.99508 1.18261 0.90907 0.91703 0.80698 0.98286 1.21525 1.32597 1.13605 0.90535 0.90570 1.25811 0.94945 0.95594 1.02377 1.70060 1.37010 1.23889 1.24619 0.85316 0.78983 0.77958 0.77881 1.19610 1.21502 1.18749 1.45435 1.68609 1.14059 1.08266 1.16280 0.78431 0.84957 0.81183 1.90880 1.58556 1.16212 1.84682 1.42483 1.67146 1.17135 1.05432 1.17973 0.95997 0.91989 0.85257 1.21084 1.02731 1.02352 0.89307 1.21224 0.96370 0.91176 0.99109 1.17706 1.08014 0.94001 0.87787 1.28337 1.01845 0.93153 0.99507 1.71908 1.17422 1.11291 1.13046 1.70972 1.16474 1.31937 0.94762 1.31007 1.01902 0.92700 1.07527 1.84260 1.61979 1.11802 0.97011 1.21055 0.96351 0.99996 0.90651 1.21225 1.02202 0.95026 0.98246 0.93913 0.97053 0.91510 0.92571 0.75895 0.73419 0.80879 0.81757 0.72936 0.85779 0.86548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.72 9.26 71.98 0.67 -6.06 16 2 C 0.29 14.61 2.56 44.25 0.11 14.73 16 3 H 0.00 -0.05 7.58 -2.39 -0.02 -0.07 16 4 C -0.54 -27.99 8.73 25.60 0.22 -27.76 16 5 H 0.08 3.60 7.74 -2.91 -0.02 3.58 16 6 C 0.01 0.68 5.30 84.66 0.45 1.13 16 7 N -0.92 -52.17 11.32 21.45 0.24 -51.92 16 8 Si 0.97 41.22 29.54 68.60 2.03 43.25 16 9 H -0.27 -11.02 7.11 99.48 0.71 -10.32 16 10 H -0.29 -12.35 7.11 99.48 0.71 -11.64 16 11 H -0.26 -10.60 7.11 99.48 0.71 -9.90 16 12 N -0.71 -28.05 5.07 -461.41 -2.34 -30.39 16 13 C 0.69 26.81 8.37 179.06 1.50 28.31 16 14 O -0.62 -30.31 13.43 -3.99 -0.05 -30.36 16 15 N -0.67 -17.98 5.33 -317.08 -1.69 -19.67 16 16 C 0.19 4.87 6.30 38.24 0.24 5.11 16 17 C -0.13 -2.32 9.95 22.35 0.22 -2.10 16 18 C -0.06 -0.94 9.61 22.50 0.22 -0.72 16 19 C -0.07 -1.59 5.87 -20.08 -0.12 -1.71 16 20 C 0.05 1.05 7.45 87.41 0.65 1.70 16 21 N -0.30 -8.28 11.34 -49.35 -0.56 -8.84 16 22 N -0.31 -7.37 11.56 -60.75 -0.70 -8.07 16 23 C -0.03 -0.44 12.38 130.61 1.62 1.17 16 24 S 0.21 2.39 22.35 -56.49 -1.26 1.13 16 25 C -0.06 -1.66 9.68 22.50 0.22 -1.44 16 26 C -0.15 -4.64 8.67 22.35 0.19 -4.45 16 27 H 0.04 1.94 8.14 -2.39 -0.02 1.92 16 28 H 0.01 0.53 8.14 -2.39 -0.02 0.51 16 29 H 0.07 3.68 6.07 -2.39 -0.01 3.66 16 30 H 0.27 14.30 8.31 -92.70 -0.77 13.53 16 31 H 0.41 12.79 8.56 -92.70 -0.79 12.00 16 32 H 0.43 7.52 8.84 -92.70 -0.82 6.70 16 33 H 0.17 1.63 8.06 -2.91 -0.02 1.61 16 34 H 0.17 1.41 7.36 -2.91 -0.02 1.38 16 35 H 0.25 0.90 8.06 -2.91 -0.02 0.88 16 36 H 0.12 3.71 7.85 -2.91 -0.02 3.69 16 37 H 0.12 4.54 6.21 -2.91 -0.02 4.52 16 Total: -1.00 -76.31 336.31 1.39 -74.92 By element: Atomic # 1 Polarization: 22.52 SS G_CDS: -0.47 Total: 22.05 kcal Atomic # 6 Polarization: 1.71 SS G_CDS: 6.19 Total: 7.90 kcal Atomic # 7 Polarization: -113.84 SS G_CDS: -5.05 Total: -118.89 kcal Atomic # 8 Polarization: -30.31 SS G_CDS: -0.05 Total: -30.36 kcal Atomic # 14 Polarization: 41.22 SS G_CDS: 2.03 Total: 43.25 kcal Atomic # 16 Polarization: 2.39 SS G_CDS: -1.26 Total: 1.13 kcal Total: -76.31 1.39 -74.92 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001425616503.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.745 kcal (2) G-P(sol) polarization free energy of solvation -76.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.921 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds