Wall clock time and date at job start Tue Mar 31 2020 12:29:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46500 * 119.99627 * 2 1 4 4 C 1.50696 * 109.47445 * 89.99896 * 3 2 1 5 5 C 1.33643 * 122.74934 * 94.73152 * 4 3 2 6 6 S 1.76199 * 107.92421 * 179.97438 * 5 4 3 7 7 C 1.70977 * 90.28251 * 0.27677 * 6 5 4 8 8 N 1.29025 * 110.16800 * 359.83404 * 7 6 5 9 9 C 1.34770 * 120.00467 * 179.97438 * 2 1 3 10 10 O 1.21575 * 120.00336 * 180.02562 * 9 2 1 11 11 N 1.34777 * 119.99778 * 359.97438 * 9 2 1 12 12 C 1.39462 * 119.99807 * 175.34233 * 11 9 2 13 13 C 1.38649 * 119.64843 * 185.44807 * 12 11 9 14 14 C 1.40812 * 118.67401 * 180.02562 * 13 12 11 15 15 C 1.41549 * 120.99734 * 179.97438 * 14 13 12 16 16 H 1.08000 * 119.99771 * 198.23925 * 15 14 13 17 17 C 1.40028 * 119.99697 * 18.23846 * 15 14 13 18 18 N 1.30739 * 120.00160 * 19.53616 * 17 15 14 19 19 Si 1.86799 * 119.99763 * 199.53117 * 17 15 14 20 20 H 1.48499 * 109.47239 * 90.00360 * 19 17 15 21 21 H 1.48504 * 109.47139 * 210.00042 * 19 17 15 22 22 H 1.48500 * 109.47499 * 330.00312 * 19 17 15 23 23 C 1.41161 * 118.00720 * 0.02562 * 14 13 12 24 24 C 1.36591 * 119.13080 * 359.97438 * 23 14 13 25 25 N 1.32068 * 121.25209 * 359.72519 * 24 23 14 26 26 H 1.08998 * 109.47237 * 90.00643 * 1 2 3 27 27 H 1.09001 * 109.46814 * 210.00207 * 1 2 3 28 28 H 1.09002 * 109.47488 * 330.00013 * 1 2 3 29 29 H 1.09005 * 109.47243 * 329.99636 * 3 2 1 30 30 H 1.08999 * 109.47256 * 209.99760 * 3 2 1 31 31 H 1.07992 * 126.03734 * 0.04169 * 5 4 3 32 32 H 1.08003 * 124.91762 * 179.84098 * 7 6 5 33 33 H 0.96997 * 119.99956 * 355.35139 * 11 9 2 34 34 H 1.08006 * 120.65962 * 0.03261 * 13 12 11 35 35 H 0.97009 * 119.99937 * 180.02562 * 18 17 15 36 36 H 1.07999 * 120.43770 * 179.97438 * 23 14 13 37 37 H 1.07993 * 119.37670 * 179.97438 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4485 1.7039 1.4207 5 6 3.5829 1.4283 2.0715 6 16 3.4604 2.1150 3.6895 7 6 1.8929 2.6973 3.3329 8 7 1.5651 2.3818 2.1255 9 6 2.1389 -1.1671 0.0005 10 8 3.3547 -1.1671 0.0010 11 7 1.4651 -2.3343 0.0016 12 6 2.1590 -3.5401 -0.0960 13 6 1.4551 -4.7293 -0.2085 14 6 2.1764 -5.9348 -0.3051 15 6 1.5078 -7.1771 -0.4212 16 1 2.0323 -8.0952 -0.2013 17 6 0.1665 -7.2155 -0.8213 18 7 -0.3592 -6.1936 -1.4449 19 14 -0.8717 -8.7267 -0.4643 20 1 -1.5291 -8.5744 0.8586 21 1 -1.9079 -8.8757 -1.5176 22 1 -0.0037 -9.9316 -0.4498 23 6 3.5862 -5.8675 -0.2816 24 6 4.1919 -4.6485 -0.1677 25 7 3.4839 -3.5367 -0.0850 26 1 -0.3633 -0.0001 -1.0276 27 1 -0.3633 -0.8900 0.5139 28 1 -0.3634 0.8900 0.5138 29 1 1.6083 2.0284 -0.5139 30 1 3.1498 1.1385 -0.5138 31 1 4.4261 0.8822 1.6752 32 1 1.2676 3.2494 4.0189 33 1 0.4975 -2.3357 0.0700 34 1 0.3751 -4.7310 -0.2218 35 1 -1.2886 -6.2201 -1.7217 36 1 4.1783 -6.7679 -0.3527 37 1 5.2702 -4.5924 -0.1488 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001426072257.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:29:07 Heat of formation + Delta-G solvation = 73.997403 kcal Electronic energy + Delta-G solvation = -23470.219055 eV Core-core repulsion = 19954.461625 eV Total energy + Delta-G solvation = -3515.757430 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.089 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.32688 -39.47525 -38.02807 -35.20150 -34.34923 -33.79800 -31.18938 -30.48828 -28.64583 -27.43490 -26.16653 -25.96844 -24.57317 -21.92460 -21.53974 -19.84448 -19.32068 -18.40356 -17.68223 -17.46118 -16.16093 -15.93219 -15.50648 -15.27652 -14.80875 -14.30763 -14.16726 -14.02773 -13.60763 -13.33141 -13.24302 -13.04654 -12.83767 -12.63399 -12.38130 -12.22304 -12.03761 -11.46085 -11.36414 -11.21759 -10.88733 -10.29376 -10.10238 -9.81612 -9.76066 -9.59104 -9.50365 -9.33788 -8.99505 -8.51000 -8.01525 -7.69700 -6.99902 -6.81712 -4.61284 0.66191 1.32175 1.65806 2.49001 2.71274 2.80615 3.00157 3.03495 3.21376 3.26808 3.81429 3.82506 4.13606 4.31611 4.66907 4.97829 5.04364 5.17745 5.35731 5.48485 5.62024 5.68979 5.74421 5.74826 5.93577 6.06600 6.47923 6.63157 6.70380 6.83949 6.93172 7.14749 7.22441 7.45803 7.50569 7.62493 7.85706 8.08629 8.34292 8.47457 8.74154 8.74945 9.16460 9.76696 10.01563 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.020748 B = 0.003042 C = 0.002892 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1349.206088 B = 9203.458409 C = 9680.316110 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.633 5.633 3 C 0.213 3.787 4 C 0.036 3.964 5 C -0.213 4.213 6 S 0.107 5.893 7 C 0.011 3.989 8 N -0.460 5.460 9 C 0.695 3.305 10 O -0.530 6.530 11 N -0.666 5.666 12 C 0.355 3.645 13 C -0.256 4.256 14 C 0.142 3.858 15 C -0.451 4.451 16 H 0.083 0.917 17 C 0.078 3.922 18 N -0.781 5.781 19 Si 0.911 3.089 20 H -0.266 1.266 21 H -0.277 1.277 22 H -0.261 1.261 23 C -0.289 4.289 24 C 0.121 3.879 25 N -0.556 5.556 26 H 0.056 0.944 27 H 0.063 0.937 28 H 0.076 0.924 29 H 0.091 0.909 30 H 0.102 0.898 31 H 0.184 0.816 32 H 0.197 0.803 33 H 0.403 0.597 34 H 0.132 0.868 35 H 0.282 0.718 36 H 0.100 0.900 37 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.440 14.754 6.109 16.033 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.373 5.373 3 C 0.087 3.913 4 C -0.097 4.097 5 C -0.353 4.353 6 S 0.358 5.642 7 C -0.288 4.288 8 N -0.174 5.174 9 C 0.396 3.604 10 O -0.401 6.401 11 N -0.315 5.315 12 C 0.129 3.871 13 C -0.281 4.281 14 C 0.134 3.866 15 C -0.482 4.482 16 H 0.101 0.899 17 C -0.142 4.142 18 N -0.406 5.406 19 Si 0.735 3.265 20 H -0.191 1.191 21 H -0.202 1.202 22 H -0.184 1.184 23 C -0.313 4.313 24 C -0.032 4.032 25 N -0.275 5.275 26 H 0.074 0.926 27 H 0.081 0.919 28 H 0.095 0.905 29 H 0.109 0.891 30 H 0.120 0.880 31 H 0.201 0.799 32 H 0.213 0.787 33 H 0.240 0.760 34 H 0.150 0.850 35 H 0.093 0.907 36 H 0.118 0.882 37 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -0.207 15.913 6.714 17.273 hybrid contribution -1.831 -1.748 -0.624 2.607 sum -2.038 14.165 6.090 15.553 Atomic orbital electron populations 1.21717 0.80011 1.02960 1.01612 1.47118 1.06245 1.04429 1.79485 1.19646 0.98837 0.84271 0.88587 1.20868 0.89721 0.99294 0.99779 1.27128 1.04813 1.07283 0.96073 1.84043 1.16323 1.49103 1.14696 1.28303 0.98721 1.05127 0.96639 1.66129 1.32775 1.13261 1.05253 1.16029 0.85718 0.80047 0.78625 1.90972 1.10497 1.84942 1.53694 1.42721 1.09704 1.03536 1.75558 1.17982 0.89300 0.83205 0.96568 1.21610 1.00734 0.90342 1.15464 1.17544 0.90580 0.92726 0.85795 1.19618 0.95207 0.93678 1.39686 0.89929 1.25992 0.98453 0.97802 0.91904 1.69794 1.14721 1.30855 1.25259 0.86259 0.79411 0.81695 0.79093 1.19144 1.20204 1.18434 1.21598 0.95374 0.97477 1.16822 1.21450 0.97777 0.87882 0.96123 1.67203 1.05293 1.30507 1.24522 0.92569 0.91861 0.90541 0.89101 0.88027 0.79891 0.78655 0.76022 0.85014 0.90702 0.88165 0.86146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.95 10.24 59.85 0.61 1.56 16 2 N -0.63 -9.59 2.86 -188.75 -0.54 -10.13 16 3 C 0.21 2.82 5.84 -5.20 -0.03 2.79 16 4 C 0.04 0.48 6.32 -84.23 -0.53 -0.05 16 5 C -0.21 -2.80 11.12 29.12 0.32 -2.48 16 6 S 0.11 1.10 23.22 -107.50 -2.50 -1.40 16 7 C 0.01 0.11 12.23 51.58 0.63 0.74 16 8 N -0.46 -5.80 10.53 -11.90 -0.13 -5.92 16 9 C 0.69 13.83 8.24 -86.92 -0.72 13.12 16 10 O -0.53 -12.29 14.18 5.30 0.08 -12.22 16 11 N -0.67 -13.75 5.27 -15.86 -0.08 -13.83 16 12 C 0.36 8.82 7.42 -154.67 -1.15 7.67 16 13 C -0.26 -6.57 8.69 -38.46 -0.33 -6.90 16 14 C 0.14 3.76 5.66 -106.55 -0.60 3.15 16 15 C -0.45 -11.59 9.12 -37.65 -0.34 -11.94 16 16 H 0.08 2.04 7.92 -52.49 -0.42 1.62 16 17 C 0.08 1.87 5.20 -17.35 -0.09 1.78 16 18 N -0.78 -19.04 10.73 55.55 0.60 -18.45 16 19 Si 0.91 17.76 29.60 -169.99 -5.03 12.73 16 20 H -0.27 -5.14 7.11 56.52 0.40 -4.74 16 21 H -0.28 -5.27 7.11 56.52 0.40 -4.87 16 22 H -0.26 -5.05 7.11 56.52 0.40 -4.65 16 23 C -0.29 -7.16 9.85 -39.07 -0.38 -7.55 16 24 C 0.12 2.96 11.10 -18.04 -0.20 2.76 16 25 N -0.56 -14.43 7.85 -12.76 -0.10 -14.53 16 26 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.06 0.73 6.30 -51.93 -0.33 0.41 16 28 H 0.08 0.81 8.07 -51.93 -0.42 0.39 16 29 H 0.09 0.98 8.07 -51.93 -0.42 0.56 16 30 H 0.10 1.41 7.38 -51.93 -0.38 1.02 16 31 H 0.18 2.53 8.06 -52.49 -0.42 2.11 16 32 H 0.20 1.27 8.06 -52.48 -0.42 0.85 16 33 H 0.40 7.07 6.39 -40.82 -0.26 6.81 16 34 H 0.13 3.36 5.90 -52.48 -0.31 3.05 16 35 H 0.28 6.18 8.29 -40.82 -0.34 5.84 16 36 H 0.10 2.28 8.06 -52.49 -0.42 1.86 16 37 H 0.12 2.57 8.06 -52.49 -0.42 2.15 16 LS Contribution 335.29 15.07 5.05 5.05 Total: -1.00 -32.21 335.29 -9.25 -41.46 By element: Atomic # 1 Polarization: 16.36 SS G_CDS: -3.78 Total: 12.57 kcal Atomic # 6 Polarization: 7.47 SS G_CDS: -2.81 Total: 4.66 kcal Atomic # 7 Polarization: -62.60 SS G_CDS: -0.25 Total: -62.86 kcal Atomic # 8 Polarization: -12.29 SS G_CDS: 0.08 Total: -12.22 kcal Atomic # 14 Polarization: 17.76 SS G_CDS: -5.03 Total: 12.73 kcal Atomic # 16 Polarization: 1.10 SS G_CDS: -2.50 Total: -1.40 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -32.21 -9.25 -41.46 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001426072257.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.457 kcal (2) G-P(sol) polarization free energy of solvation -32.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.460 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds