Wall clock time and date at job start Tue Mar 31 2020 12:29:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46500 * 119.99627 * 2 1 4 4 C 1.50696 * 109.47445 * 89.99896 * 3 2 1 5 5 C 1.33643 * 122.74934 * 94.73152 * 4 3 2 6 6 S 1.76199 * 107.92421 * 179.97438 * 5 4 3 7 7 C 1.70977 * 90.28251 * 0.27677 * 6 5 4 8 8 N 1.29025 * 110.16800 * 359.83404 * 7 6 5 9 9 C 1.34770 * 120.00467 * 179.97438 * 2 1 3 10 10 O 1.21575 * 120.00336 * 180.02562 * 9 2 1 11 11 N 1.34777 * 119.99778 * 359.97438 * 9 2 1 12 12 C 1.39462 * 119.99807 * 175.34233 * 11 9 2 13 13 C 1.38649 * 119.64843 * 185.44807 * 12 11 9 14 14 C 1.40812 * 118.67401 * 180.02562 * 13 12 11 15 15 C 1.41549 * 120.99734 * 179.97438 * 14 13 12 16 16 H 1.08000 * 119.99771 * 198.23925 * 15 14 13 17 17 C 1.40028 * 119.99697 * 18.23846 * 15 14 13 18 18 N 1.30739 * 120.00160 * 19.53616 * 17 15 14 19 19 Si 1.86799 * 119.99763 * 199.53117 * 17 15 14 20 20 H 1.48499 * 109.47239 * 90.00360 * 19 17 15 21 21 H 1.48504 * 109.47139 * 210.00042 * 19 17 15 22 22 H 1.48500 * 109.47499 * 330.00312 * 19 17 15 23 23 C 1.41161 * 118.00720 * 0.02562 * 14 13 12 24 24 C 1.36591 * 119.13080 * 359.97438 * 23 14 13 25 25 N 1.32068 * 121.25209 * 359.72519 * 24 23 14 26 26 H 1.08998 * 109.47237 * 90.00643 * 1 2 3 27 27 H 1.09001 * 109.46814 * 210.00207 * 1 2 3 28 28 H 1.09002 * 109.47488 * 330.00013 * 1 2 3 29 29 H 1.09005 * 109.47243 * 329.99636 * 3 2 1 30 30 H 1.08999 * 109.47256 * 209.99760 * 3 2 1 31 31 H 1.07992 * 126.03734 * 0.04169 * 5 4 3 32 32 H 1.08003 * 124.91762 * 179.84098 * 7 6 5 33 33 H 0.96997 * 119.99956 * 355.35139 * 11 9 2 34 34 H 1.08006 * 120.65962 * 0.03261 * 13 12 11 35 35 H 0.97009 * 119.99937 * 180.02562 * 18 17 15 36 36 H 1.07999 * 120.43770 * 179.97438 * 23 14 13 37 37 H 1.07993 * 119.37670 * 179.97438 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4485 1.7039 1.4207 5 6 3.5829 1.4283 2.0715 6 16 3.4604 2.1150 3.6895 7 6 1.8929 2.6973 3.3329 8 7 1.5651 2.3818 2.1255 9 6 2.1389 -1.1671 0.0005 10 8 3.3547 -1.1671 0.0010 11 7 1.4651 -2.3343 0.0016 12 6 2.1590 -3.5401 -0.0960 13 6 1.4551 -4.7293 -0.2085 14 6 2.1764 -5.9348 -0.3051 15 6 1.5078 -7.1771 -0.4212 16 1 2.0323 -8.0952 -0.2013 17 6 0.1665 -7.2155 -0.8213 18 7 -0.3592 -6.1936 -1.4449 19 14 -0.8717 -8.7267 -0.4643 20 1 -1.5291 -8.5744 0.8586 21 1 -1.9079 -8.8757 -1.5176 22 1 -0.0037 -9.9316 -0.4498 23 6 3.5862 -5.8675 -0.2816 24 6 4.1919 -4.6485 -0.1677 25 7 3.4839 -3.5367 -0.0850 26 1 -0.3633 -0.0001 -1.0276 27 1 -0.3633 -0.8900 0.5139 28 1 -0.3634 0.8900 0.5138 29 1 1.6083 2.0284 -0.5139 30 1 3.1498 1.1385 -0.5138 31 1 4.4261 0.8822 1.6752 32 1 1.2676 3.2494 4.0189 33 1 0.4975 -2.3357 0.0700 34 1 0.3751 -4.7310 -0.2218 35 1 -1.2886 -6.2201 -1.7217 36 1 4.1783 -6.7679 -0.3527 37 1 5.2702 -4.5924 -0.1488 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001426072257.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:29:06 Heat of formation + Delta-G solvation = 54.253399 kcal Electronic energy + Delta-G solvation = -23471.075219 eV Core-core repulsion = 19954.461625 eV Total energy + Delta-G solvation = -3516.613594 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.089 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.67848 -40.70375 -39.73593 -36.58076 -36.10071 -35.55425 -32.47502 -32.16415 -30.34924 -28.50285 -27.93316 -27.25880 -25.59111 -23.80505 -23.22014 -21.27406 -20.47430 -19.68494 -19.37391 -18.65979 -17.72217 -17.18972 -17.01105 -16.59821 -16.18296 -16.03656 -15.89020 -15.34231 -14.87582 -14.74562 -14.59239 -14.34606 -14.20179 -14.09447 -13.80651 -13.43822 -13.17829 -13.08998 -12.92249 -12.63944 -12.32122 -11.99852 -11.91478 -11.52812 -11.23178 -11.13850 -10.69054 -10.42177 -9.99351 -9.92489 -9.72836 -9.58347 -8.83203 -8.64544 -6.55840 -0.23570 0.45252 0.77748 0.85772 1.01627 1.37426 1.41438 1.54512 1.59540 1.98333 2.19550 2.25430 2.81204 2.92869 3.27974 3.79546 3.98302 4.11854 4.17442 4.21319 4.44181 4.52719 4.61485 4.71984 4.75833 4.80607 4.88055 4.94692 5.10065 5.12642 5.24553 5.45276 5.52559 5.66754 5.77271 5.94969 6.23736 6.55784 6.71223 6.78661 6.82597 6.86822 7.56985 7.91355 8.22967 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.020748 B = 0.003042 C = 0.002892 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1349.206088 B = 9203.458409 C = 9680.316110 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.623 5.623 3 C 0.211 3.789 4 C 0.030 3.970 5 C -0.248 4.248 6 S 0.147 5.853 7 C 0.020 3.980 8 N -0.480 5.480 9 C 0.690 3.310 10 O -0.569 6.569 11 N -0.662 5.662 12 C 0.352 3.648 13 C -0.274 4.274 14 C 0.113 3.887 15 C -0.479 4.479 16 H 0.084 0.916 17 C 0.040 3.960 18 N -0.803 5.803 19 Si 0.988 3.012 20 H -0.261 1.261 21 H -0.265 1.265 22 H -0.258 1.258 23 C -0.303 4.303 24 C 0.116 3.884 25 N -0.580 5.580 26 H 0.073 0.927 27 H 0.063 0.937 28 H 0.094 0.906 29 H 0.119 0.881 30 H 0.087 0.913 31 H 0.166 0.834 32 H 0.235 0.765 33 H 0.416 0.584 34 H 0.129 0.871 35 H 0.294 0.706 36 H 0.114 0.886 37 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.324 15.342 6.980 17.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.361 5.361 3 C 0.085 3.915 4 C -0.103 4.103 5 C -0.388 4.388 6 S 0.399 5.601 7 C -0.278 4.278 8 N -0.195 5.195 9 C 0.391 3.609 10 O -0.443 6.443 11 N -0.312 5.312 12 C 0.125 3.875 13 C -0.300 4.300 14 C 0.105 3.895 15 C -0.509 4.509 16 H 0.102 0.898 17 C -0.178 4.178 18 N -0.427 5.427 19 Si 0.808 3.192 20 H -0.185 1.185 21 H -0.190 1.190 22 H -0.182 1.182 23 C -0.327 4.327 24 C -0.037 4.037 25 N -0.301 5.301 26 H 0.092 0.908 27 H 0.082 0.918 28 H 0.113 0.887 29 H 0.137 0.863 30 H 0.106 0.894 31 H 0.183 0.817 32 H 0.251 0.749 33 H 0.254 0.746 34 H 0.147 0.853 35 H 0.105 0.895 36 H 0.132 0.868 37 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -2.121 16.562 7.588 18.341 hybrid contribution -1.255 -1.822 -0.861 2.374 sum -3.376 14.740 6.728 16.551 Atomic orbital electron populations 1.21941 0.77655 1.03879 1.03064 1.47121 1.07659 1.03420 1.77927 1.19793 0.98647 0.83801 0.89289 1.20829 0.90020 0.99634 0.99802 1.27138 1.04763 1.08538 0.98380 1.83881 1.16111 1.47943 1.12133 1.29012 0.98859 1.03635 0.96279 1.66163 1.32820 1.14242 1.06248 1.16208 0.85446 0.80835 0.78400 1.90938 1.12299 1.85675 1.55380 1.42635 1.10252 1.02868 1.75455 1.18194 0.89250 0.84457 0.95556 1.21589 1.00545 0.90734 1.17093 1.17975 0.91608 0.93565 0.86369 1.19909 0.96714 0.93527 1.40788 0.89759 1.26864 0.98879 1.01110 0.90943 1.69812 1.15653 1.32546 1.24730 0.85109 0.77509 0.77389 0.79168 1.18547 1.18969 1.18213 1.21780 0.95185 0.98271 1.17455 1.21892 0.99062 0.87578 0.95204 1.67328 1.05930 1.31143 1.25669 0.90826 0.91799 0.88718 0.86312 0.89434 0.81662 0.74871 0.74553 0.85319 0.89512 0.86780 0.83623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.67 10.24 127.77 1.31 2.98 16 2 N -0.62 -18.52 2.86 -869.35 -2.48 -21.00 16 3 C 0.21 5.48 5.84 85.63 0.50 5.98 16 4 C 0.03 0.79 6.32 41.52 0.26 1.05 16 5 C -0.25 -6.59 11.12 66.78 0.74 -5.85 16 6 S 0.15 2.79 23.22 -56.49 -1.31 1.48 16 7 C 0.02 0.35 12.23 130.65 1.60 1.95 16 8 N -0.48 -11.14 10.53 -191.55 -2.02 -13.16 16 9 C 0.69 27.85 8.24 179.06 1.48 29.33 16 10 O -0.57 -27.23 14.18 -3.95 -0.06 -27.28 16 11 N -0.66 -27.69 5.27 -322.37 -1.70 -29.38 16 12 C 0.35 17.91 7.42 132.76 0.99 18.90 16 13 C -0.27 -14.40 8.69 23.00 0.20 -14.20 16 14 C 0.11 6.12 5.66 -21.12 -0.12 6.01 16 15 C -0.48 -24.89 9.12 23.52 0.21 -24.68 16 16 H 0.08 4.19 7.92 -2.91 -0.02 4.17 16 17 C 0.04 1.91 5.20 85.29 0.44 2.35 16 18 N -0.80 -38.92 10.73 21.84 0.23 -38.69 16 19 Si 0.99 35.52 29.60 68.60 2.03 37.56 16 20 H -0.26 -9.11 7.11 99.48 0.71 -8.41 16 21 H -0.27 -8.99 7.11 99.48 0.71 -8.28 16 22 H -0.26 -9.14 7.11 99.48 0.71 -8.44 16 23 C -0.30 -15.34 9.85 22.60 0.22 -15.12 16 24 C 0.12 5.74 11.10 84.27 0.94 6.68 16 25 N -0.58 -30.86 7.85 -194.27 -1.53 -32.39 16 26 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 27 H 0.06 1.39 6.30 -2.39 -0.02 1.37 16 28 H 0.09 1.76 8.07 -2.39 -0.02 1.74 16 29 H 0.12 2.38 8.07 -2.38 -0.02 2.36 16 30 H 0.09 2.51 7.38 -2.39 -0.02 2.49 16 31 H 0.17 4.91 8.06 -2.91 -0.02 4.89 16 32 H 0.24 2.06 8.06 -2.91 -0.02 2.03 16 33 H 0.42 14.61 6.39 -92.71 -0.59 14.02 16 34 H 0.13 6.70 5.90 -2.91 -0.02 6.69 16 35 H 0.29 12.61 8.29 -92.70 -0.77 11.84 16 36 H 0.11 5.27 8.06 -2.91 -0.02 5.24 16 37 H 0.15 6.26 8.06 -2.91 -0.02 6.23 16 Total: -1.00 -70.67 335.29 2.47 -68.19 By element: Atomic # 1 Polarization: 38.78 SS G_CDS: 0.53 Total: 39.31 kcal Atomic # 6 Polarization: 6.60 SS G_CDS: 8.77 Total: 15.37 kcal Atomic # 7 Polarization: -127.13 SS G_CDS: -7.49 Total: -134.62 kcal Atomic # 8 Polarization: -27.23 SS G_CDS: -0.06 Total: -27.28 kcal Atomic # 14 Polarization: 35.52 SS G_CDS: 2.03 Total: 37.56 kcal Atomic # 16 Polarization: 2.79 SS G_CDS: -1.31 Total: 1.48 kcal Total: -70.67 2.47 -68.19 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001426072257.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.446 kcal (2) G-P(sol) polarization free energy of solvation -70.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.779 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.192 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds