Wall clock time and date at job start Tue Mar 31 2020 11:32:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 H 1.09001 * 109.47563 * 305.00337 * 3 2 1 5 5 C 1.50700 * 109.47798 * 185.00026 * 3 2 1 6 6 H 1.07998 * 120.00370 * 240.00769 * 5 3 2 7 7 C 1.37878 * 119.99824 * 59.99855 * 5 3 2 8 8 N 1.31523 * 120.00027 * 0.02562 * 7 5 3 9 9 Si 1.86802 * 119.99983 * 180.02562 * 7 5 3 10 10 H 1.48496 * 109.47138 * 359.97438 * 9 7 5 11 11 H 1.48500 * 109.47111 * 119.99988 * 9 7 5 12 12 H 1.48503 * 109.46778 * 239.99962 * 9 7 5 13 13 O 1.45208 * 109.47166 * 65.00081 * 3 2 1 14 14 C 1.34769 * 116.99835 * 270.00332 * 13 3 2 15 15 O 1.21525 * 119.99984 * 359.97438 * 14 13 3 16 16 C 1.47311 * 119.99839 * 179.97438 * 14 13 3 17 17 C 1.39874 * 120.11384 * 359.72018 * 16 14 13 18 18 C 1.37586 * 119.92615 * 179.74340 * 17 16 14 19 19 C 1.39124 * 120.16485 * 0.53602 * 18 17 16 20 20 O 1.35696 * 119.88280 * 179.71860 * 19 18 17 21 21 C 1.42904 * 116.99727 * 0.02562 * 20 19 18 22 22 F 1.39901 * 109.46966 * 299.99687 * 21 20 19 23 23 F 1.39896 * 109.47514 * 59.99706 * 21 20 19 24 24 C 1.38846 * 120.23450 * 359.73823 * 19 18 17 25 25 C 1.38046 * 120.06715 * 359.97438 * 24 19 18 26 26 F 1.35099 * 120.07774 * 179.97438 * 25 24 19 27 27 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 28 28 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 29 29 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 31 31 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 32 32 H 0.96993 * 119.99651 * 179.97438 * 8 7 5 33 33 H 1.08000 * 120.04144 * 0.02779 * 17 16 14 34 34 H 1.07997 * 119.91405 * 180.25614 * 18 17 16 35 35 H 1.08999 * 109.47247 * 180.02562 * 21 20 19 36 36 H 1.08001 * 119.96577 * 179.97438 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5419 1.4443 -0.1238 6 1 4.1473 1.8887 0.6523 7 6 4.1433 0.8784 -1.2280 8 7 3.4062 0.3374 -2.1734 9 14 6.0050 0.8801 -1.3812 10 1 6.5988 1.5453 -0.1938 11 1 6.4963 -0.5190 -1.4627 12 1 6.3999 1.6157 -2.6093 13 8 1.6560 2.0916 1.2408 14 6 0.4680 2.7279 1.2561 15 8 -0.2275 2.7403 0.2597 16 6 0.0128 3.4085 2.4807 17 6 0.8089 3.3908 3.6307 18 6 0.3823 4.0321 4.7707 19 6 -0.8440 4.6889 4.7861 20 8 -1.2617 5.3148 5.9153 21 6 -0.3918 5.2586 7.0477 22 9 -0.1861 3.9236 7.4119 23 9 0.8349 5.8477 6.7232 24 6 -1.6423 4.7059 3.6501 25 6 -1.2211 4.0706 2.4992 26 9 -1.9978 4.0866 1.3940 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8933 -0.5139 0.8900 31 1 1.8934 -0.5138 -0.8899 32 1 3.8292 -0.0604 -2.9503 33 1 1.7594 2.8781 3.6224 34 1 0.9990 4.0218 5.6572 35 1 -0.8445 5.7965 7.8807 36 1 -2.5937 5.2168 3.6670 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001525462134.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:32:00 Heat of formation + Delta-G solvation = -252.969102 kcal Electronic energy + Delta-G solvation = -26727.036224 eV Core-core repulsion = 22147.905349 eV Total energy + Delta-G solvation = -4579.130875 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.091 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -49.78105 -48.91100 -47.76159 -40.38140 -39.46273 -37.42579 -35.69757 -33.51855 -31.57002 -31.15536 -30.46622 -27.39126 -26.70699 -24.04542 -23.36124 -22.85669 -21.12095 -19.66085 -19.52164 -18.63793 -18.34579 -17.65795 -17.08901 -16.55997 -16.06226 -15.87904 -15.81988 -15.26437 -15.04650 -14.86775 -14.66209 -14.32450 -14.17870 -14.05980 -13.96148 -13.67943 -13.01130 -12.86681 -12.80663 -12.34741 -12.12804 -11.71696 -11.55492 -11.43312 -11.31946 -11.16840 -10.97183 -10.64811 -10.28056 -9.81396 -9.67066 -9.37966 -9.19532 -8.81260 -8.74727 -8.45893 -6.19081 -4.26271 0.53418 0.93585 1.99296 2.79676 3.00960 3.23319 3.29569 3.33804 3.51304 3.68406 3.82371 4.10510 4.17789 4.31987 4.41271 4.60027 4.77984 5.00717 5.12776 5.25136 5.70282 5.79335 5.96700 6.02296 6.13291 6.24755 6.31797 6.46844 6.62402 6.87596 6.96801 7.17416 7.22663 7.60790 7.73101 7.92259 8.14258 8.58724 8.86284 9.38875 10.87793 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.017115 B = 0.003471 C = 0.003081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1635.637509 B = 8064.430985 C = 9085.690460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.136 4.136 3 C 0.222 3.778 4 H 0.049 0.951 5 C -0.521 4.521 6 H 0.070 0.930 7 C 0.063 3.937 8 N -0.887 5.887 9 Si 0.911 3.089 10 H -0.270 1.270 11 H -0.281 1.281 12 H -0.282 1.282 13 O -0.349 6.349 14 C 0.496 3.504 15 O -0.500 6.500 16 C -0.174 4.174 17 C 0.006 3.994 18 C -0.218 4.218 19 C 0.158 3.842 20 O -0.316 6.316 21 C 0.412 3.588 22 F -0.195 7.195 23 F -0.195 7.195 24 C -0.190 4.190 25 C 0.195 3.805 26 F -0.105 7.105 27 H 0.053 0.947 28 H 0.031 0.969 29 H 0.033 0.967 30 H 0.042 0.958 31 H 0.109 0.891 32 H 0.266 0.734 33 H 0.159 0.841 34 H 0.146 0.854 35 H 0.185 0.815 36 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.738 9.271 18.893 22.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.174 4.174 3 C 0.170 3.830 4 H 0.067 0.933 5 C -0.559 4.559 6 H 0.088 0.912 7 C -0.139 4.139 8 N -0.525 5.525 9 Si 0.738 3.262 10 H -0.195 1.195 11 H -0.207 1.207 12 H -0.208 1.208 13 O -0.266 6.266 14 C 0.340 3.660 15 O -0.390 6.390 16 C -0.176 4.176 17 C -0.012 4.012 18 C -0.236 4.236 19 C 0.114 3.886 20 O -0.233 6.233 21 C 0.323 3.677 22 F -0.177 7.177 23 F -0.176 7.176 24 C -0.209 4.209 25 C 0.175 3.825 26 F -0.083 7.083 27 H 0.073 0.927 28 H 0.050 0.950 29 H 0.052 0.948 30 H 0.061 0.939 31 H 0.127 0.873 32 H 0.076 0.924 33 H 0.177 0.823 34 H 0.163 0.837 35 H 0.202 0.798 36 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -9.046 9.227 18.372 22.461 hybrid contribution 0.990 -0.206 -0.346 1.068 sum -8.056 9.021 18.026 21.707 Atomic orbital electron populations 1.21864 0.98331 0.99054 1.00807 1.22024 0.92667 0.99251 1.03414 1.20740 0.95076 0.88777 0.78428 0.93342 1.21066 0.89539 1.38983 1.06315 0.91226 1.24887 0.99248 0.94748 0.95049 1.69903 1.35306 1.37823 1.09439 0.86229 0.83866 0.77875 0.78230 1.19481 1.20709 1.20758 1.86519 1.33240 1.62452 1.44379 1.20461 0.81534 0.77321 0.86723 1.90853 1.55273 1.58159 1.34738 1.19573 0.96056 1.06263 0.95707 1.21284 0.98673 0.92105 0.89163 1.21572 0.96623 1.03966 1.01456 1.18647 0.92811 0.91804 0.85331 1.86578 1.45947 1.71228 1.19550 1.23418 0.77710 0.78190 0.88424 1.93126 1.95011 1.37978 1.91554 1.93127 1.47299 1.83759 1.93446 1.20079 1.03099 1.07591 0.90128 1.17207 0.87755 0.94638 0.82903 1.91633 1.72857 1.93750 1.50053 0.92740 0.95012 0.94761 0.93918 0.87256 0.92412 0.82329 0.83694 0.79838 0.82859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.21 8.56 37.16 0.32 -2.89 16 2 C -0.14 -3.38 5.49 -26.74 -0.15 -3.53 16 3 C 0.22 5.90 2.25 -27.89 -0.06 5.84 16 4 H 0.05 1.43 7.16 -51.93 -0.37 1.06 16 5 C -0.52 -14.46 8.90 -34.44 -0.31 -14.76 16 6 H 0.07 1.90 7.81 -52.49 -0.41 1.49 16 7 C 0.06 1.72 5.29 -17.82 -0.09 1.62 16 8 N -0.89 -24.98 11.30 55.43 0.63 -24.36 16 9 Si 0.91 20.92 29.54 -169.99 -5.02 15.90 16 10 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 11 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 12 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 13 O -0.35 -8.26 9.05 -40.68 -0.37 -8.62 16 14 C 0.50 10.78 6.34 34.42 0.22 11.00 16 15 O -0.50 -12.07 12.52 -19.29 -0.24 -12.31 16 16 C -0.17 -2.98 5.88 -104.92 -0.62 -3.59 16 17 C 0.01 0.08 9.60 -39.21 -0.38 -0.29 16 18 C -0.22 -2.59 8.23 -39.49 -0.32 -2.92 16 19 C 0.16 1.79 6.49 -39.03 -0.25 1.54 16 20 O -0.32 -2.76 10.42 -18.79 -0.20 -2.96 16 21 C 0.41 2.47 5.98 101.05 0.60 3.08 16 22 F -0.19 -1.55 15.56 2.25 0.04 -1.51 16 23 F -0.19 -1.56 15.57 2.25 0.04 -1.53 16 24 C -0.19 -2.29 9.95 -39.43 -0.39 -2.68 16 25 C 0.20 3.02 7.28 -38.98 -0.28 2.73 16 26 F -0.11 -1.82 15.54 2.25 0.03 -1.78 16 27 H 0.05 1.28 7.79 -51.93 -0.40 0.88 16 28 H 0.03 0.69 6.06 -51.93 -0.31 0.37 16 29 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.04 1.02 8.14 -51.93 -0.42 0.60 16 31 H 0.11 2.95 5.95 -51.93 -0.31 2.64 16 32 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 33 H 0.16 2.18 7.60 -52.49 -0.40 1.78 16 34 H 0.15 1.51 5.07 -52.49 -0.27 1.24 16 35 H 0.19 0.13 8.14 -51.93 -0.42 -0.30 16 36 H 0.15 1.47 8.06 -52.49 -0.42 1.04 16 LS Contribution 319.27 15.07 4.81 4.81 Total: -1.00 -31.83 319.27 -5.30 -37.13 By element: Atomic # 1 Polarization: 3.39 SS G_CDS: -3.30 Total: 0.09 kcal Atomic # 6 Polarization: -3.14 SS G_CDS: -1.72 Total: -4.86 kcal Atomic # 7 Polarization: -24.98 SS G_CDS: 0.63 Total: -24.36 kcal Atomic # 8 Polarization: -23.08 SS G_CDS: -0.81 Total: -23.89 kcal Atomic # 9 Polarization: -4.93 SS G_CDS: 0.11 Total: -4.82 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -31.83 -5.30 -37.13 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001525462134.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -215.836 kcal (2) G-P(sol) polarization free energy of solvation -31.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -247.667 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.133 kcal (6) G-S(sol) free energy of system = (1) + (5) -252.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds