Wall clock time and date at job start Tue Mar 31 2020 11:31:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 H 1.09001 * 109.47563 * 305.00337 * 3 2 1 5 5 C 1.50700 * 109.47798 * 185.00026 * 3 2 1 6 6 H 1.07998 * 120.00370 * 240.00769 * 5 3 2 7 7 C 1.37878 * 119.99824 * 59.99855 * 5 3 2 8 8 N 1.31523 * 120.00027 * 0.02562 * 7 5 3 9 9 Si 1.86802 * 119.99983 * 180.02562 * 7 5 3 10 10 H 1.48496 * 109.47138 * 359.97438 * 9 7 5 11 11 H 1.48500 * 109.47111 * 119.99988 * 9 7 5 12 12 H 1.48503 * 109.46778 * 239.99962 * 9 7 5 13 13 O 1.45208 * 109.47166 * 65.00081 * 3 2 1 14 14 C 1.34769 * 116.99835 * 270.00332 * 13 3 2 15 15 O 1.21525 * 119.99984 * 359.97438 * 14 13 3 16 16 C 1.47311 * 119.99839 * 179.97438 * 14 13 3 17 17 C 1.39874 * 120.11384 * 359.72018 * 16 14 13 18 18 C 1.37586 * 119.92615 * 179.74340 * 17 16 14 19 19 C 1.39124 * 120.16485 * 0.53602 * 18 17 16 20 20 O 1.35696 * 119.88280 * 179.71860 * 19 18 17 21 21 C 1.42904 * 116.99727 * 0.02562 * 20 19 18 22 22 F 1.39901 * 109.46966 * 299.99687 * 21 20 19 23 23 F 1.39896 * 109.47514 * 59.99706 * 21 20 19 24 24 C 1.38846 * 120.23450 * 359.73823 * 19 18 17 25 25 C 1.38046 * 120.06715 * 359.97438 * 24 19 18 26 26 F 1.35099 * 120.07774 * 179.97438 * 25 24 19 27 27 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 28 28 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 29 29 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 31 31 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 32 32 H 0.96993 * 119.99651 * 179.97438 * 8 7 5 33 33 H 1.08000 * 120.04144 * 0.02779 * 17 16 14 34 34 H 1.07997 * 119.91405 * 180.25614 * 18 17 16 35 35 H 1.08999 * 109.47247 * 180.02562 * 21 20 19 36 36 H 1.08001 * 119.96577 * 179.97438 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5419 1.4443 -0.1238 6 1 4.1473 1.8887 0.6523 7 6 4.1433 0.8784 -1.2280 8 7 3.4062 0.3374 -2.1734 9 14 6.0050 0.8801 -1.3812 10 1 6.5988 1.5453 -0.1938 11 1 6.4963 -0.5190 -1.4627 12 1 6.3999 1.6157 -2.6093 13 8 1.6560 2.0916 1.2408 14 6 0.4680 2.7279 1.2561 15 8 -0.2275 2.7403 0.2597 16 6 0.0128 3.4085 2.4807 17 6 0.8089 3.3908 3.6307 18 6 0.3823 4.0321 4.7707 19 6 -0.8440 4.6889 4.7861 20 8 -1.2617 5.3148 5.9153 21 6 -0.3918 5.2586 7.0477 22 9 -0.1861 3.9236 7.4119 23 9 0.8349 5.8477 6.7232 24 6 -1.6423 4.7059 3.6501 25 6 -1.2211 4.0706 2.4992 26 9 -1.9978 4.0866 1.3940 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8933 -0.5139 0.8900 31 1 1.8934 -0.5138 -0.8899 32 1 3.8292 -0.0604 -2.9503 33 1 1.7594 2.8781 3.6224 34 1 0.9990 4.0218 5.6572 35 1 -0.8445 5.7965 7.8807 36 1 -2.5937 5.2168 3.6670 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001525462134.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:31:59 Heat of formation + Delta-G solvation = -271.589044 kcal Electronic energy + Delta-G solvation = -26727.843645 eV Core-core repulsion = 22147.905349 eV Total energy + Delta-G solvation = -4579.938296 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.091 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -50.32643 -50.17356 -48.31543 -41.60336 -40.89350 -38.49865 -37.52815 -35.52259 -33.43240 -32.38539 -31.61531 -29.34693 -27.49251 -25.55548 -24.78193 -24.16403 -22.64850 -21.50862 -20.38130 -19.41377 -19.24923 -18.90372 -18.58527 -17.94861 -17.56892 -17.33271 -17.16672 -16.65328 -16.51159 -16.14398 -15.64798 -15.45678 -15.00711 -14.95593 -14.80414 -14.75688 -14.63440 -14.46847 -14.02915 -13.80955 -13.41216 -13.33517 -13.14934 -12.97914 -12.87033 -12.79560 -12.57278 -12.48956 -12.13313 -11.78500 -11.51667 -11.36004 -10.84366 -10.54723 -10.25184 -9.85617 -8.28028 -6.45090 -0.65480 -0.12022 1.31663 1.40265 1.42313 1.42928 1.56250 1.87334 2.34543 2.40234 2.51972 2.97197 3.01829 3.32184 3.55609 3.63624 3.67522 3.72926 3.82668 4.04568 4.34468 4.36674 4.45918 4.61143 4.73415 4.80156 4.85646 4.88298 5.05446 5.09933 5.18652 5.33108 5.49959 5.64369 5.66726 5.92835 6.07354 6.58783 6.89758 7.25847 8.79283 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.017115 B = 0.003471 C = 0.003081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1635.637509 B = 8064.430985 C = 9085.690460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.129 4.129 3 C 0.225 3.775 4 H 0.006 0.994 5 C -0.548 4.548 6 H 0.068 0.932 7 C 0.017 3.983 8 N -0.915 5.915 9 Si 0.983 3.017 10 H -0.263 1.263 11 H -0.271 1.271 12 H -0.277 1.277 13 O -0.353 6.353 14 C 0.491 3.509 15 O -0.535 6.535 16 C -0.205 4.205 17 C 0.008 3.992 18 C -0.209 4.209 19 C 0.177 3.823 20 O -0.310 6.310 21 C 0.405 3.595 22 F -0.206 7.206 23 F -0.206 7.206 24 C -0.176 4.176 25 C 0.183 3.817 26 F -0.122 7.122 27 H 0.034 0.966 28 H 0.032 0.968 29 H 0.063 0.937 30 H 0.049 0.951 31 H 0.088 0.912 32 H 0.271 0.729 33 H 0.158 0.842 34 H 0.165 0.835 35 H 0.246 0.754 36 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.657 10.206 21.858 25.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.167 4.167 3 C 0.172 3.828 4 H 0.024 0.976 5 C -0.586 4.586 6 H 0.087 0.913 7 C -0.182 4.182 8 N -0.553 5.553 9 Si 0.806 3.194 10 H -0.187 1.187 11 H -0.196 1.196 12 H -0.203 1.203 13 O -0.269 6.269 14 C 0.338 3.662 15 O -0.427 6.427 16 C -0.207 4.207 17 C -0.010 4.010 18 C -0.228 4.228 19 C 0.132 3.868 20 O -0.226 6.226 21 C 0.317 3.683 22 F -0.188 7.188 23 F -0.188 7.188 24 C -0.195 4.195 25 C 0.163 3.837 26 F -0.100 7.100 27 H 0.053 0.947 28 H 0.051 0.949 29 H 0.082 0.918 30 H 0.067 0.933 31 H 0.107 0.893 32 H 0.080 0.920 33 H 0.176 0.824 34 H 0.182 0.818 35 H 0.262 0.738 36 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges -8.978 10.171 21.370 25.313 hybrid contribution 0.887 -0.393 -1.105 1.471 sum -8.090 9.778 20.265 23.911 Atomic orbital electron populations 1.21712 0.96528 1.00592 0.99885 1.21870 0.94224 0.98018 1.02561 1.20451 0.94755 0.89276 0.78311 0.97620 1.21346 0.90193 1.40010 1.07049 0.91343 1.25819 1.04315 0.93823 0.94293 1.70028 1.37434 1.37945 1.09863 0.85138 0.77558 0.78340 0.78384 1.18658 1.19604 1.20276 1.86498 1.34710 1.62982 1.42759 1.21269 0.80327 0.76566 0.88062 1.90822 1.55867 1.59529 1.36464 1.19380 0.97934 1.08729 0.94655 1.21272 0.98337 0.92373 0.89016 1.21740 0.97076 1.02961 1.00992 1.18703 0.91845 0.90126 0.86104 1.86636 1.46659 1.70163 1.19158 1.24507 0.77287 0.78069 0.88456 1.93110 1.95053 1.39146 1.91442 1.93110 1.48285 1.83854 1.93532 1.20272 1.04082 1.06326 0.88858 1.17442 0.87234 0.95447 0.83570 1.91587 1.73180 1.93996 1.51263 0.94675 0.94899 0.91815 0.93257 0.89333 0.92011 0.82410 0.81808 0.73845 0.79904 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.99 8.56 71.98 0.62 -5.37 16 2 C -0.13 -6.65 5.49 30.59 0.17 -6.48 16 3 C 0.23 12.57 2.25 29.85 0.07 12.64 16 4 H 0.01 0.38 7.16 -2.39 -0.02 0.36 16 5 C -0.55 -31.39 8.90 25.60 0.23 -31.16 16 6 H 0.07 3.82 7.81 -2.91 -0.02 3.80 16 7 C 0.02 0.96 5.29 84.65 0.45 1.40 16 8 N -0.91 -52.87 11.30 21.45 0.24 -52.63 16 9 Si 0.98 43.07 29.54 68.60 2.03 45.10 16 10 H -0.26 -11.09 7.11 99.48 0.71 -10.38 16 11 H -0.27 -11.37 7.11 99.48 0.71 -10.67 16 12 H -0.28 -11.89 7.11 99.48 0.71 -11.19 16 13 O -0.35 -17.48 9.05 -56.79 -0.51 -18.00 16 14 C 0.49 22.46 6.34 70.21 0.44 22.90 16 15 O -0.53 -27.43 12.52 19.75 0.25 -27.18 16 16 C -0.20 -7.16 5.88 -20.06 -0.12 -7.28 16 17 C 0.01 0.23 9.60 22.51 0.22 0.45 16 18 C -0.21 -4.52 8.23 22.33 0.18 -4.33 16 19 C 0.18 3.48 6.49 22.63 0.15 3.63 16 20 O -0.31 -4.08 10.42 -90.16 -0.94 -5.02 16 21 C 0.41 3.06 5.98 113.37 0.68 3.74 16 22 F -0.21 -2.51 15.56 44.97 0.70 -1.81 16 23 F -0.21 -2.56 15.57 44.97 0.70 -1.86 16 24 C -0.18 -3.85 9.95 22.37 0.22 -3.63 16 25 C 0.18 5.64 7.28 22.66 0.16 5.81 16 26 F -0.12 -4.34 15.54 44.97 0.70 -3.64 16 27 H 0.03 1.72 7.79 -2.39 -0.02 1.70 16 28 H 0.03 1.47 6.06 -2.39 -0.01 1.46 16 29 H 0.06 2.51 8.14 -2.38 -0.02 2.49 16 30 H 0.05 2.42 8.14 -2.39 -0.02 2.40 16 31 H 0.09 4.96 5.95 -2.39 -0.01 4.94 16 32 H 0.27 14.57 8.31 -92.71 -0.77 13.80 16 33 H 0.16 4.37 7.60 -2.91 -0.02 4.34 16 34 H 0.16 2.93 5.07 -2.91 -0.01 2.91 16 35 H 0.25 -1.11 8.14 -2.39 -0.02 -1.13 16 36 H 0.18 2.88 8.06 -2.91 -0.02 2.85 16 Total: -1.00 -72.82 319.27 7.77 -65.05 By element: Atomic # 1 Polarization: 6.55 SS G_CDS: 1.14 Total: 7.69 kcal Atomic # 6 Polarization: -11.16 SS G_CDS: 3.47 Total: -7.69 kcal Atomic # 7 Polarization: -52.87 SS G_CDS: 0.24 Total: -52.63 kcal Atomic # 8 Polarization: -48.99 SS G_CDS: -1.21 Total: -50.19 kcal Atomic # 9 Polarization: -9.42 SS G_CDS: 2.10 Total: -7.32 kcal Atomic # 14 Polarization: 43.07 SS G_CDS: 2.03 Total: 45.10 kcal Total: -72.82 7.77 -65.05 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001525462134.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -206.542 kcal (2) G-P(sol) polarization free energy of solvation -72.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -279.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.047 kcal (6) G-S(sol) free energy of system = (1) + (5) -271.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds