Wall clock time and date at job start Tue Mar 31 2020 11:30:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52999 * 109.47000 * 2 1 4 4 H 1.08999 * 109.47091 * 55.00324 * 3 2 1 5 5 C 1.50706 * 109.46812 * 174.99913 * 3 2 1 6 6 H 1.07998 * 119.99769 * 120.00769 * 5 3 2 7 7 C 1.37877 * 120.00286 * 299.99911 * 5 3 2 8 8 N 1.31515 * 119.99896 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 119.99872 * 180.02562 * 7 5 3 10 10 H 1.48497 * 109.46927 * 90.00469 * 9 7 5 11 11 H 1.48504 * 109.47102 * 210.00293 * 9 7 5 12 12 H 1.48497 * 109.47275 * 330.00418 * 9 7 5 13 13 N 1.46499 * 109.47341 * 295.00080 * 3 2 1 14 14 C 1.34777 * 119.99665 * 85.27876 * 13 3 2 15 15 O 1.21563 * 120.00283 * 359.72077 * 14 13 3 16 16 C 1.47707 * 119.99508 * 179.72383 * 14 13 3 17 17 C 1.39007 * 120.27695 * 359.97438 * 16 14 13 18 18 C 1.40509 * 117.98906 * 180.02562 * 17 16 14 19 19 C 1.40549 * 121.20398 * 180.02562 * 18 17 16 20 20 C 1.36135 * 119.62437 * 180.02562 * 19 18 17 21 21 C 1.39338 * 120.83705 * 359.95235 * 20 19 18 22 22 C 1.36130 * 121.08886 * 0.02669 * 21 20 19 23 23 C 1.40528 * 119.82128 * 359.97438 * 22 21 20 24 24 N 1.33796 * 120.80967 * 180.02562 * 23 22 21 25 25 C 1.30953 * 121.70880 * 179.71731 * 24 23 22 26 26 Cl 1.73601 * 119.25792 * 180.28602 * 25 24 23 27 27 H 1.09003 * 109.47322 * 59.99862 * 1 2 3 28 28 H 1.09004 * 109.47177 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.46986 * 299.99873 * 1 2 3 30 30 H 1.09002 * 109.46986 * 240.00127 * 2 1 3 31 31 H 1.08994 * 109.47111 * 120.00040 * 2 1 3 32 32 H 0.96999 * 119.99952 * 179.97438 * 8 7 5 33 33 H 0.97001 * 119.99790 * 264.99588 * 13 3 2 34 34 H 1.08000 * 121.00828 * 0.02562 * 17 16 14 35 35 H 1.08002 * 120.18748 * 359.97438 * 19 18 17 36 36 H 1.07998 * 119.58194 * 180.02562 * 20 19 18 37 37 H 1.08002 * 119.45782 * 180.02562 * 21 20 19 38 38 H 1.08003 * 120.09062 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9815 0.8418 5 6 3.5419 1.4442 0.1239 6 1 4.1471 1.8889 -0.6522 7 6 4.1433 0.8784 1.2280 8 7 3.4062 0.3366 2.1729 9 14 6.0049 0.8812 1.3817 10 1 6.4416 2.1141 2.0849 11 1 6.4396 -0.3099 2.1548 12 1 6.6135 0.8417 0.0278 13 7 1.6524 2.0975 -1.2518 14 6 0.4371 2.6693 -1.3649 15 8 -0.3392 2.6371 -0.4300 16 6 0.0487 3.3350 -2.6249 17 6 0.9322 3.3757 -3.6974 18 6 0.5133 4.0218 -4.8727 19 6 1.3517 4.1021 -5.9979 20 6 0.9133 4.7363 -7.1199 21 6 -0.3572 5.3064 -7.1678 22 6 -1.1953 5.2468 -6.0967 23 6 -0.7802 4.6010 -4.9196 24 7 -1.5879 4.5303 -3.8554 25 6 -1.2213 3.9281 -2.7518 26 17 -2.3234 3.8677 -1.4118 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8899 32 1 3.8293 -0.0619 2.9495 33 1 2.2719 2.1232 -1.9977 34 1 1.9110 2.9242 -3.6293 35 1 2.3385 3.6640 -5.9722 36 1 1.5579 4.7973 -7.9842 37 1 -0.6825 5.8039 -8.0695 38 1 -2.1766 5.6946 -6.1513 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001528108624.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:30:45 Heat of formation + Delta-G solvation = 15.632274 kcal Electronic energy + Delta-G solvation = -23690.451743 eV Core-core repulsion = 20137.826954 eV Total energy + Delta-G solvation = -3552.624789 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.088 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.08021 -39.07920 -37.30426 -36.10863 -35.08286 -33.91808 -32.37413 -31.23437 -30.46321 -30.07574 -27.03349 -24.88600 -24.11429 -23.02844 -22.31378 -20.92820 -19.53494 -18.56794 -17.83421 -17.56725 -16.35967 -15.44594 -15.41145 -15.15471 -14.89737 -14.69787 -14.32954 -14.24506 -13.88989 -13.53018 -13.11372 -12.70629 -12.64215 -12.11605 -11.99575 -11.83230 -11.55167 -11.29719 -11.11474 -10.97911 -10.89814 -10.88090 -10.68104 -10.34282 -10.21324 -10.01473 -9.63455 -9.09989 -8.87978 -8.84770 -8.53455 -8.50585 -7.89194 -6.16172 -4.26081 0.01637 0.37528 1.64684 1.91745 2.42414 3.21776 3.28731 3.29766 3.53721 3.76465 3.98606 4.21488 4.28971 4.33996 4.48185 4.54039 4.72739 4.88448 5.00220 5.15356 5.24835 5.43737 5.51841 5.68885 5.70217 6.01322 6.10846 6.13830 6.38485 6.45126 6.48940 6.64601 7.02311 7.17161 7.31032 7.37584 7.48467 7.57788 7.67414 7.85448 8.13743 8.54642 8.71178 8.99920 9.41051 10.89051 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.015221 B = 0.003927 C = 0.003279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1839.098269 B = 7128.676151 C = 8537.426439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.127 4.127 3 C 0.272 3.728 4 H 0.053 0.947 5 C -0.537 4.537 6 H 0.061 0.939 7 C 0.068 3.932 8 N -0.880 5.880 9 Si 0.901 3.099 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.274 1.274 13 N -0.699 5.699 14 C 0.541 3.459 15 O -0.516 6.516 16 C -0.162 4.162 17 C -0.011 4.011 18 C -0.112 4.112 19 C -0.083 4.083 20 C -0.122 4.122 21 C -0.092 4.092 22 C -0.097 4.097 23 C 0.153 3.847 24 N -0.479 5.479 25 C 0.248 3.752 26 Cl 0.014 6.986 27 H 0.038 0.962 28 H 0.023 0.977 29 H 0.051 0.949 30 H 0.031 0.969 31 H 0.100 0.900 32 H 0.265 0.735 33 H 0.385 0.615 34 H 0.155 0.845 35 H 0.136 0.864 36 H 0.130 0.870 37 H 0.132 0.868 38 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.039 7.278 -17.664 19.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.166 4.166 3 C 0.171 3.829 4 H 0.071 0.929 5 C -0.575 4.575 6 H 0.079 0.921 7 C -0.135 4.135 8 N -0.517 5.517 9 Si 0.728 3.272 10 H -0.206 1.206 11 H -0.211 1.211 12 H -0.199 1.199 13 N -0.347 5.347 14 C 0.324 3.676 15 O -0.393 6.393 16 C -0.168 4.168 17 C -0.038 4.038 18 C -0.114 4.114 19 C -0.102 4.102 20 C -0.140 4.140 21 C -0.112 4.112 22 C -0.116 4.116 23 C 0.031 3.969 24 N -0.190 5.190 25 C 0.068 3.932 26 Cl 0.043 6.957 27 H 0.057 0.943 28 H 0.042 0.958 29 H 0.070 0.930 30 H 0.050 0.950 31 H 0.118 0.882 32 H 0.075 0.925 33 H 0.218 0.782 34 H 0.172 0.828 35 H 0.154 0.846 36 H 0.148 0.852 37 H 0.149 0.851 38 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -6.484 7.537 -16.777 19.502 hybrid contribution 2.004 -0.385 -0.131 2.044 sum -4.480 7.152 -16.908 18.897 Atomic orbital electron populations 1.21843 0.98214 0.98144 1.01321 1.21936 0.92707 0.99613 1.02331 1.18851 0.94279 0.89237 0.80576 0.92909 1.21201 0.90591 1.39287 1.06413 0.92124 1.24870 0.98587 0.94731 0.95361 1.69889 1.35158 1.37375 1.09304 0.86462 0.84834 0.77692 0.78191 1.20553 1.21051 1.19876 1.46461 1.14120 1.55408 1.18750 1.17717 0.83593 0.80044 0.86216 1.90851 1.50565 1.58955 1.38961 1.21026 0.94586 1.03570 0.97662 1.22080 0.98928 0.92588 0.90182 1.18827 0.95678 1.01268 0.95623 1.21080 0.99226 0.98063 0.91838 1.20946 0.96379 0.98271 0.98428 1.20965 0.93712 0.98181 0.98366 1.20800 1.00794 0.99092 0.90900 1.18781 0.89477 0.96184 0.92428 1.67378 1.35085 1.17520 0.98971 1.21953 0.89155 0.92288 0.89810 1.98466 1.61609 1.95906 1.39672 0.94306 0.95836 0.92977 0.95048 0.88185 0.92497 0.78199 0.82754 0.84611 0.85212 0.85057 0.84417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.01 8.52 37.16 0.32 -2.70 16 2 C -0.13 -2.99 5.45 -26.73 -0.15 -3.14 16 3 C 0.27 6.56 2.24 -69.08 -0.15 6.40 16 4 H 0.05 1.48 7.57 -51.93 -0.39 1.09 16 5 C -0.54 -13.61 8.73 -34.44 -0.30 -13.91 16 6 H 0.06 1.46 7.74 -52.49 -0.41 1.05 16 7 C 0.07 1.77 5.29 -17.82 -0.09 1.68 16 8 N -0.88 -24.03 11.29 55.43 0.63 -23.41 16 9 Si 0.90 20.04 29.54 -169.99 -5.02 15.02 16 10 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 11 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 12 H -0.27 -5.94 7.11 56.52 0.40 -5.53 16 13 N -0.70 -13.80 4.97 -55.92 -0.28 -14.08 16 14 C 0.54 10.55 6.34 -12.39 -0.08 10.47 16 15 O -0.52 -11.45 11.07 5.31 0.06 -11.39 16 16 C -0.16 -2.65 5.89 -104.80 -0.62 -3.27 16 17 C -0.01 -0.15 9.39 -38.44 -0.36 -0.51 16 18 C -0.11 -1.35 5.74 -106.81 -0.61 -1.97 16 19 C -0.08 -0.75 9.77 -39.47 -0.39 -1.13 16 20 C -0.12 -0.92 9.96 -39.93 -0.40 -1.32 16 21 C -0.09 -0.71 9.94 -39.93 -0.40 -1.11 16 22 C -0.10 -0.99 9.97 -39.48 -0.39 -1.39 16 23 C 0.15 2.03 6.61 -84.79 -0.56 1.47 16 24 N -0.48 -7.42 10.27 -7.80 -0.08 -7.50 16 25 C 0.25 4.14 7.30 -16.98 -0.12 4.02 16 26 Cl 0.01 0.25 26.11 -51.86 -1.35 -1.11 16 27 H 0.04 0.83 5.66 -51.93 -0.29 0.53 16 28 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 29 H 0.05 1.21 7.85 -51.93 -0.41 0.80 16 30 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.10 2.62 5.95 -51.93 -0.31 2.31 16 32 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 33 H 0.38 6.44 6.61 -40.82 -0.27 6.17 16 34 H 0.15 1.61 6.48 -52.49 -0.34 1.27 16 35 H 0.14 0.90 8.06 -52.49 -0.42 0.48 16 36 H 0.13 0.62 8.06 -52.49 -0.42 0.20 16 37 H 0.13 0.63 8.06 -52.49 -0.42 0.21 16 38 H 0.14 1.22 8.06 -52.48 -0.42 0.80 16 LS Contribution 330.39 15.07 4.98 4.98 Total: -1.00 -29.95 330.39 -9.47 -39.42 By element: Atomic # 1 Polarization: 8.55 SS G_CDS: -4.09 Total: 4.45 kcal Atomic # 6 Polarization: -2.09 SS G_CDS: -4.31 Total: -6.40 kcal Atomic # 7 Polarization: -45.26 SS G_CDS: 0.27 Total: -44.99 kcal Atomic # 8 Polarization: -11.45 SS G_CDS: 0.06 Total: -11.39 kcal Atomic # 14 Polarization: 20.04 SS G_CDS: -5.02 Total: 15.02 kcal Atomic # 17 Polarization: 0.25 SS G_CDS: -1.35 Total: -1.11 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -29.95 -9.47 -39.42 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001528108624.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.053 kcal (2) G-P(sol) polarization free energy of solvation -29.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.420 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds