Wall clock time and date at job start Tue Mar 31 2020 11:30:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52999 * 109.47000 * 2 1 4 4 H 1.08999 * 109.47091 * 55.00324 * 3 2 1 5 5 C 1.50706 * 109.46812 * 174.99913 * 3 2 1 6 6 H 1.07998 * 119.99769 * 120.00769 * 5 3 2 7 7 C 1.37877 * 120.00286 * 299.99911 * 5 3 2 8 8 N 1.31515 * 119.99896 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 119.99872 * 180.02562 * 7 5 3 10 10 H 1.48497 * 109.46927 * 90.00469 * 9 7 5 11 11 H 1.48504 * 109.47102 * 210.00293 * 9 7 5 12 12 H 1.48497 * 109.47275 * 330.00418 * 9 7 5 13 13 N 1.46499 * 109.47341 * 295.00080 * 3 2 1 14 14 C 1.34777 * 119.99665 * 85.27876 * 13 3 2 15 15 O 1.21563 * 120.00283 * 359.72077 * 14 13 3 16 16 C 1.47707 * 119.99508 * 179.72383 * 14 13 3 17 17 C 1.39007 * 120.27695 * 359.97438 * 16 14 13 18 18 C 1.40509 * 117.98906 * 180.02562 * 17 16 14 19 19 C 1.40549 * 121.20398 * 180.02562 * 18 17 16 20 20 C 1.36135 * 119.62437 * 180.02562 * 19 18 17 21 21 C 1.39338 * 120.83705 * 359.95235 * 20 19 18 22 22 C 1.36130 * 121.08886 * 0.02669 * 21 20 19 23 23 C 1.40528 * 119.82128 * 359.97438 * 22 21 20 24 24 N 1.33796 * 120.80967 * 180.02562 * 23 22 21 25 25 C 1.30953 * 121.70880 * 179.71731 * 24 23 22 26 26 Cl 1.73601 * 119.25792 * 180.28602 * 25 24 23 27 27 H 1.09003 * 109.47322 * 59.99862 * 1 2 3 28 28 H 1.09004 * 109.47177 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.46986 * 299.99873 * 1 2 3 30 30 H 1.09002 * 109.46986 * 240.00127 * 2 1 3 31 31 H 1.08994 * 109.47111 * 120.00040 * 2 1 3 32 32 H 0.96999 * 119.99952 * 179.97438 * 8 7 5 33 33 H 0.97001 * 119.99790 * 264.99588 * 13 3 2 34 34 H 1.08000 * 121.00828 * 0.02562 * 17 16 14 35 35 H 1.08002 * 120.18748 * 359.97438 * 19 18 17 36 36 H 1.07998 * 119.58194 * 180.02562 * 20 19 18 37 37 H 1.08002 * 119.45782 * 180.02562 * 21 20 19 38 38 H 1.08003 * 120.09062 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9815 0.8418 5 6 3.5419 1.4442 0.1239 6 1 4.1471 1.8889 -0.6522 7 6 4.1433 0.8784 1.2280 8 7 3.4062 0.3366 2.1729 9 14 6.0049 0.8812 1.3817 10 1 6.4416 2.1141 2.0849 11 1 6.4396 -0.3099 2.1548 12 1 6.6135 0.8417 0.0278 13 7 1.6524 2.0975 -1.2518 14 6 0.4371 2.6693 -1.3649 15 8 -0.3392 2.6371 -0.4300 16 6 0.0487 3.3350 -2.6249 17 6 0.9322 3.3757 -3.6974 18 6 0.5133 4.0218 -4.8727 19 6 1.3517 4.1021 -5.9979 20 6 0.9133 4.7363 -7.1199 21 6 -0.3572 5.3064 -7.1678 22 6 -1.1953 5.2468 -6.0967 23 6 -0.7802 4.6010 -4.9196 24 7 -1.5879 4.5303 -3.8554 25 6 -1.2213 3.9281 -2.7518 26 17 -2.3234 3.8677 -1.4118 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8899 32 1 3.8293 -0.0619 2.9495 33 1 2.2719 2.1232 -1.9977 34 1 1.9110 2.9242 -3.6293 35 1 2.3385 3.6640 -5.9722 36 1 1.5579 4.7973 -7.9842 37 1 -0.6825 5.8039 -8.0695 38 1 -2.1766 5.6946 -6.1513 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001528108624.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:30:44 Heat of formation + Delta-G solvation = -2.510453 kcal Electronic energy + Delta-G solvation = -23691.238471 eV Core-core repulsion = 20137.826954 eV Total energy + Delta-G solvation = -3553.411517 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.088 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.08621 -40.52170 -38.35641 -37.22946 -36.85866 -35.04235 -34.11939 -32.80944 -31.52172 -31.05114 -28.88906 -25.96456 -25.31388 -24.64347 -23.20446 -22.40262 -21.27819 -19.78385 -19.06777 -18.57968 -17.89766 -17.08746 -16.69154 -16.48039 -16.15685 -15.71972 -15.63984 -15.34413 -15.17402 -14.59814 -14.47881 -14.34462 -13.88461 -13.56702 -13.39853 -13.16042 -12.89683 -12.75066 -12.67101 -12.56634 -12.29099 -12.13391 -12.03334 -11.99979 -11.71432 -11.52150 -11.14303 -11.00743 -10.52962 -10.32489 -9.87197 -9.59122 -9.32236 -8.13285 -6.30488 -0.90319 -0.61611 0.74557 0.79467 1.45757 1.47610 1.47984 1.58038 2.27318 2.31368 2.51173 2.95523 3.16751 3.24731 3.44016 3.50465 3.55086 3.95243 4.10783 4.24527 4.32070 4.52557 4.53876 4.59011 4.60153 4.77554 4.82791 5.01509 5.10451 5.24668 5.29627 5.34058 5.44715 5.46525 5.56743 5.62529 5.79692 5.82509 5.93506 6.18983 6.46147 6.76402 6.92975 7.34485 7.52255 8.92012 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.015221 B = 0.003927 C = 0.003279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1839.098269 B = 7128.676151 C = 8537.426439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.119 4.119 3 C 0.281 3.719 4 H 0.002 0.998 5 C -0.547 4.547 6 H 0.075 0.925 7 C 0.017 3.983 8 N -0.914 5.914 9 Si 0.968 3.032 10 H -0.281 1.281 11 H -0.287 1.287 12 H -0.257 1.257 13 N -0.695 5.695 14 C 0.542 3.458 15 O -0.551 6.551 16 C -0.192 4.192 17 C 0.010 3.990 18 C -0.123 4.123 19 C -0.085 4.085 20 C -0.110 4.110 21 C -0.069 4.069 22 C -0.120 4.120 23 C 0.130 3.870 24 N -0.493 5.493 25 C 0.229 3.771 26 Cl -0.010 7.010 27 H 0.041 0.959 28 H 0.043 0.957 29 H 0.027 0.973 30 H 0.042 0.958 31 H 0.073 0.927 32 H 0.264 0.736 33 H 0.401 0.599 34 H 0.181 0.819 35 H 0.165 0.835 36 H 0.170 0.830 37 H 0.170 0.830 38 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.817 8.007 -22.120 23.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.158 4.158 3 C 0.178 3.822 4 H 0.020 0.980 5 C -0.585 4.585 6 H 0.093 0.907 7 C -0.184 4.184 8 N -0.553 5.553 9 Si 0.793 3.207 10 H -0.207 1.207 11 H -0.212 1.212 12 H -0.181 1.181 13 N -0.345 5.345 14 C 0.328 3.672 15 O -0.430 6.430 16 C -0.199 4.199 17 C -0.016 4.016 18 C -0.125 4.125 19 C -0.104 4.104 20 C -0.127 4.127 21 C -0.088 4.088 22 C -0.138 4.138 23 C 0.009 3.991 24 N -0.204 5.204 25 C 0.050 3.950 26 Cl 0.018 6.982 27 H 0.060 0.940 28 H 0.062 0.938 29 H 0.046 0.954 30 H 0.061 0.939 31 H 0.091 0.909 32 H 0.073 0.927 33 H 0.237 0.763 34 H 0.198 0.802 35 H 0.183 0.817 36 H 0.188 0.812 37 H 0.187 0.813 38 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -4.259 8.282 -21.285 23.233 hybrid contribution 1.308 -0.482 0.957 1.691 sum -2.951 7.799 -20.328 21.972 Atomic orbital electron populations 1.21676 0.97137 0.99007 1.00269 1.21780 0.93551 0.99125 1.01392 1.18405 0.93739 0.89098 0.80923 0.97973 1.21569 0.91250 1.38904 1.06782 0.90716 1.25741 1.03136 0.94411 0.95067 1.70051 1.37030 1.38320 1.09862 0.85400 0.79320 0.77237 0.78702 1.20675 1.21235 1.18127 1.46128 1.14865 1.55613 1.17911 1.18133 0.82795 0.79260 0.87022 1.90828 1.51477 1.60104 1.40634 1.20619 0.95671 1.06290 0.97281 1.22392 0.98952 0.90957 0.89306 1.19063 0.95811 1.01213 0.96394 1.21461 0.99948 0.98030 0.90932 1.21488 0.96411 0.95850 0.98956 1.21485 0.93071 0.95868 0.98400 1.21029 1.02051 0.99968 0.90779 1.19327 0.90127 0.96989 0.92640 1.67329 1.36108 1.17676 0.99274 1.21879 0.89191 0.93996 0.89979 1.98440 1.62433 1.96194 1.41089 0.93998 0.93842 0.95375 0.93920 0.90914 0.92677 0.76286 0.80158 0.81721 0.81250 0.81301 0.83833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.58 8.52 71.98 0.61 -4.97 16 2 C -0.12 -5.78 5.45 30.59 0.17 -5.61 16 3 C 0.28 14.01 2.24 44.25 0.10 14.11 16 4 H 0.00 0.14 7.57 -2.39 -0.02 0.12 16 5 C -0.55 -27.85 8.73 25.60 0.22 -27.63 16 6 H 0.07 3.50 7.74 -2.91 -0.02 3.48 16 7 C 0.02 0.87 5.29 84.65 0.45 1.32 16 8 N -0.91 -51.45 11.29 21.45 0.24 -51.21 16 9 Si 0.97 40.91 29.54 68.60 2.03 42.93 16 10 H -0.28 -11.84 7.11 99.48 0.71 -11.13 16 11 H -0.29 -12.09 7.11 99.48 0.71 -11.38 16 12 H -0.26 -10.11 7.11 99.48 0.71 -9.40 16 13 N -0.70 -27.81 4.97 -449.11 -2.23 -30.04 16 14 C 0.54 21.91 6.34 86.75 0.55 22.46 16 15 O -0.55 -25.99 11.07 -3.91 -0.04 -26.04 16 16 C -0.19 -6.39 5.89 -19.98 -0.12 -6.50 16 17 C 0.01 0.25 9.39 23.01 0.22 0.46 16 18 C -0.12 -2.66 5.74 -21.28 -0.12 -2.78 16 19 C -0.09 -1.12 9.77 22.34 0.22 -0.90 16 20 C -0.11 -0.99 9.96 22.04 0.22 -0.77 16 21 C -0.07 -0.71 9.94 22.04 0.22 -0.49 16 22 C -0.12 -2.12 9.97 22.34 0.22 -1.90 16 23 C 0.13 3.29 6.61 40.28 0.27 3.55 16 24 N -0.49 -15.53 10.27 -178.58 -1.83 -17.36 16 25 C 0.23 7.97 7.30 85.44 0.62 8.59 16 26 Cl -0.01 -0.38 26.11 -2.72 -0.07 -0.45 16 27 H 0.04 1.84 5.66 -2.39 -0.01 1.83 16 28 H 0.04 1.74 8.14 -2.38 -0.02 1.72 16 29 H 0.03 1.36 7.85 -2.39 -0.02 1.35 16 30 H 0.04 1.92 8.14 -2.39 -0.02 1.90 16 31 H 0.07 3.95 5.95 -2.39 -0.01 3.94 16 32 H 0.26 14.15 8.31 -92.71 -0.77 13.38 16 33 H 0.40 13.02 6.61 -92.71 -0.61 12.41 16 34 H 0.18 3.23 6.48 -2.91 -0.02 3.22 16 35 H 0.17 1.21 8.06 -2.91 -0.02 1.19 16 36 H 0.17 0.32 8.06 -2.91 -0.02 0.29 16 37 H 0.17 0.53 8.06 -2.91 -0.02 0.51 16 38 H 0.14 2.29 8.06 -2.91 -0.02 2.27 16 Total: -1.00 -69.97 330.39 2.43 -67.54 By element: Atomic # 1 Polarization: 15.18 SS G_CDS: 0.50 Total: 15.68 kcal Atomic # 6 Polarization: -4.90 SS G_CDS: 3.85 Total: -1.05 kcal Atomic # 7 Polarization: -94.78 SS G_CDS: -3.82 Total: -98.61 kcal Atomic # 8 Polarization: -25.99 SS G_CDS: -0.04 Total: -26.04 kcal Atomic # 14 Polarization: 40.91 SS G_CDS: 2.03 Total: 42.93 kcal Atomic # 17 Polarization: -0.38 SS G_CDS: -0.07 Total: -0.45 kcal Total: -69.97 2.43 -67.54 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001528108624.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.029 kcal (2) G-P(sol) polarization free energy of solvation -69.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.539 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds