Wall clock time and date at job start Tue Mar 31 2020 12:03:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.50708 * 109.47141 * 119.99670 * 2 1 3 5 5 H 1.08000 * 119.99723 * 120.00060 * 4 2 1 6 6 C 1.37873 * 119.99930 * 300.00010 * 4 2 1 7 7 N 1.31509 * 120.00195 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99968 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.46809 * 0.02562 * 8 6 4 10 10 H 1.48501 * 109.46948 * 120.00245 * 8 6 4 11 11 H 1.48497 * 109.47378 * 240.00531 * 8 6 4 12 12 N 1.46500 * 109.47473 * 239.99757 * 2 1 3 13 13 C 1.34780 * 119.99910 * 85.00011 * 12 2 1 14 14 O 1.21569 * 119.99853 * 359.97438 * 13 12 2 15 15 C 1.47773 * 120.00069 * 180.02562 * 13 12 2 16 16 C 1.39543 * 120.12475 * 359.72670 * 15 13 12 17 17 C 1.38499 * 119.79874 * 179.77074 * 16 15 13 18 18 N 1.40262 * 119.97744 * 180.24921 * 17 16 15 19 19 C 1.36564 * 125.66733 * 359.94855 * 18 17 16 20 20 C 1.34856 * 108.19864 * 179.89122 * 19 18 17 21 21 C 1.40932 * 107.46976 * 0.36256 * 20 19 18 22 22 C 1.34856 * 107.46252 * 359.77477 * 21 20 19 23 23 C 1.38983 * 120.04779 * 0.50115 * 17 16 15 24 24 C 1.38160 * 120.24947 * 359.74657 * 23 17 16 25 25 C 1.38184 * 120.20310 * 359.97438 * 24 23 17 26 26 Cl 1.73607 * 120.02457 * 180.02562 * 25 24 23 27 27 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 29 29 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 30 30 H 0.97006 * 120.00358 * 179.97438 * 7 6 4 31 31 H 0.96994 * 119.99975 * 265.00388 * 12 2 1 32 32 H 1.08006 * 120.10354 * 0.02562 * 16 15 13 33 33 H 1.07998 * 125.89824 * 359.97438 * 19 18 17 34 34 H 1.08002 * 126.26293 * 180.13545 * 20 19 18 35 35 H 1.07997 * 126.26905 * 179.75386 * 21 20 19 36 36 H 1.08000 * 125.89883 * 179.97438 * 22 21 20 37 37 H 1.07995 * 119.86985 * 179.72520 * 23 17 16 38 38 H 1.07998 * 119.90096 * 179.97438 * 24 23 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2306 5 1 2.6533 -1.5885 1.1315 6 6 1.6993 -0.2393 2.4828 7 7 0.9428 0.8297 2.6034 8 14 2.3213 -1.1202 4.0081 9 1 3.1464 -2.2868 3.6039 10 1 3.1465 -0.1871 4.8166 11 1 1.1661 -1.5866 4.8161 12 7 2.0184 -0.6906 -1.1961 13 6 2.1471 -0.0183 -2.3571 14 8 1.8575 1.1611 -2.4118 15 6 2.6393 -0.7150 -3.5638 16 6 2.9768 -2.0677 -3.5028 17 6 3.4329 -2.7152 -4.6390 18 7 3.7683 -4.0760 -4.5831 19 6 3.6909 -4.8703 -3.4750 20 6 4.0939 -6.1109 -3.8171 21 6 4.4406 -6.0816 -5.1828 22 6 4.2319 -4.8252 -5.6264 23 6 3.5634 -2.0163 -5.8332 24 6 3.2346 -0.6758 -5.8946 25 6 2.7732 -0.0209 -4.7687 26 17 2.3608 1.6635 -4.8513 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 0.5139 0.8900 30 1 0.7081 1.1610 3.4844 31 1 2.2490 -1.6317 -1.1525 32 1 2.8789 -2.6090 -2.5733 33 1 3.3623 -4.5591 -2.4944 34 1 4.1454 -6.9690 -3.1632 35 1 4.8066 -6.9128 -5.7671 36 1 4.4025 -4.4725 -6.6328 37 1 3.9235 -2.5230 -6.7163 38 1 3.3386 -0.1380 -6.8254 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001565695103.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:03:27 Heat of formation + Delta-G solvation = 46.877310 kcal Electronic energy + Delta-G solvation = -23383.173381 eV Core-core repulsion = 19831.903478 eV Total energy + Delta-G solvation = -3551.269903 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.088 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.83067 -39.79177 -38.08527 -36.33546 -34.87143 -33.16624 -32.71118 -31.62609 -29.21615 -28.81948 -28.62387 -25.30845 -24.27804 -23.29257 -21.70400 -20.35002 -20.15334 -19.49647 -18.92884 -17.10996 -16.65819 -16.06193 -15.54971 -15.27286 -15.02237 -14.71731 -14.37759 -14.12454 -14.00279 -13.85687 -13.19830 -12.97363 -12.61215 -12.50622 -12.41710 -12.16326 -11.88512 -11.72757 -11.55160 -11.18590 -11.01528 -10.96193 -10.70268 -10.31061 -10.27392 -9.76866 -9.38296 -9.08781 -8.98919 -8.59719 -8.44799 -8.16133 -7.97347 -6.16338 -4.26037 0.46071 0.71405 2.12474 2.18218 2.58745 2.81799 3.08544 3.21481 3.29449 3.31654 3.80721 3.88749 4.28502 4.32701 4.43813 4.70113 4.74633 4.95596 5.06276 5.16274 5.20127 5.28790 5.42720 5.47252 5.59665 5.69952 5.91798 6.04121 6.10439 6.18442 6.70875 6.78361 6.91812 6.97097 7.09745 7.18652 7.35809 7.48597 7.63459 7.85847 8.09777 8.53730 8.71023 8.97768 9.41445 10.89625 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.010548 B = 0.004329 C = 0.003159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2653.880390 B = 6465.740357 C = 8861.493580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.265 3.735 3 H 0.052 0.948 4 C -0.535 4.535 5 H 0.061 0.939 6 C 0.067 3.933 7 N -0.882 5.882 8 Si 0.901 3.099 9 H -0.273 1.273 10 H -0.282 1.282 11 H -0.282 1.282 12 N -0.699 5.699 13 C 0.536 3.464 14 O -0.521 6.521 15 C -0.084 4.084 16 C -0.099 4.099 17 C 0.135 3.865 18 N -0.396 5.396 19 C -0.011 4.011 20 C -0.190 4.190 21 C -0.190 4.190 22 C -0.018 4.018 23 C -0.115 4.115 24 C -0.092 4.092 25 C -0.005 4.005 26 Cl -0.024 7.024 27 H 0.026 0.974 28 H 0.016 0.984 29 H 0.091 0.909 30 H 0.264 0.736 31 H 0.386 0.614 32 H 0.144 0.856 33 H 0.168 0.832 34 H 0.142 0.858 35 H 0.140 0.860 36 H 0.164 0.836 37 H 0.140 0.860 38 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.664 -9.647 -17.577 20.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.164 3.836 3 H 0.070 0.930 4 C -0.573 4.573 5 H 0.079 0.921 6 C -0.136 4.136 7 N -0.519 5.519 8 Si 0.729 3.271 9 H -0.197 1.197 10 H -0.208 1.208 11 H -0.208 1.208 12 N -0.347 5.347 13 C 0.319 3.681 14 O -0.398 6.398 15 C -0.089 4.089 16 C -0.120 4.120 17 C 0.043 3.957 18 N -0.068 5.068 19 C -0.138 4.138 20 C -0.214 4.214 21 C -0.214 4.214 22 C -0.145 4.145 23 C -0.135 4.135 24 C -0.112 4.112 25 C -0.034 4.034 26 Cl 0.006 6.994 27 H 0.045 0.955 28 H 0.035 0.965 29 H 0.110 0.890 30 H 0.074 0.926 31 H 0.219 0.781 32 H 0.161 0.839 33 H 0.186 0.814 34 H 0.159 0.841 35 H 0.158 0.842 36 H 0.182 0.818 37 H 0.158 0.842 38 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 5.243 -8.231 -17.425 19.971 hybrid contribution 0.404 -0.936 0.878 1.345 sum 5.647 -9.167 -16.547 19.742 Atomic orbital electron populations 1.22082 0.98241 0.99191 1.01071 1.18814 0.91130 0.94083 0.79568 0.93021 1.21220 1.32575 1.13296 0.90255 0.92053 1.24873 0.94743 0.94923 0.99055 1.69907 1.35731 1.22413 1.23861 0.86395 0.78626 0.79539 0.82555 1.19722 1.20835 1.20829 1.46517 1.64499 1.13395 1.10335 1.17948 0.79967 0.87081 0.83059 1.90845 1.49937 1.14664 1.84390 1.20065 1.00895 0.93015 0.94925 1.20991 0.99564 0.93579 0.97831 1.17760 1.00420 0.82434 0.95126 1.41635 1.49208 1.05904 1.10051 1.22051 1.08697 0.91045 0.92002 1.21017 1.07223 0.96821 0.96360 1.20997 1.08094 0.96429 0.95890 1.21874 1.07369 0.91863 0.93356 1.20829 1.02059 0.94058 0.96557 1.20873 0.98803 0.93647 0.97838 1.21060 1.00399 0.88111 0.93795 1.98426 1.91209 1.11526 1.98239 0.95458 0.96497 0.89013 0.92561 0.78123 0.83856 0.81424 0.84055 0.84209 0.81831 0.84204 0.83607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.61 9.26 37.16 0.34 -3.27 16 2 C 0.27 6.62 2.56 -69.08 -0.18 6.44 16 3 H 0.05 1.49 7.58 -51.93 -0.39 1.09 16 4 C -0.54 -13.88 8.73 -34.44 -0.30 -14.18 16 5 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 6 C 0.07 1.79 5.30 -17.82 -0.09 1.69 16 7 N -0.88 -24.50 11.32 55.43 0.63 -23.87 16 8 Si 0.90 20.35 29.54 -169.99 -5.02 15.32 16 9 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 10 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 11 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 12 N -0.70 -14.29 5.02 -55.90 -0.28 -14.58 16 13 C 0.54 10.69 7.73 -12.36 -0.10 10.59 16 14 O -0.52 -12.02 13.62 5.31 0.07 -11.95 16 15 C -0.08 -1.32 5.87 -104.97 -0.62 -1.94 16 16 C -0.10 -1.30 8.94 -39.00 -0.35 -1.65 16 17 C 0.14 1.57 6.61 -83.63 -0.55 1.02 16 18 N -0.40 -4.44 2.97 -60.96 -0.18 -4.62 16 19 C -0.01 -0.13 10.73 -16.64 -0.18 -0.31 16 20 C -0.19 -1.98 10.86 -39.76 -0.43 -2.41 16 21 C -0.19 -1.84 10.86 -39.76 -0.43 -2.28 16 22 C -0.02 -0.18 10.73 -16.65 -0.18 -0.36 16 23 C -0.11 -1.12 9.44 -39.33 -0.37 -1.49 16 24 C -0.09 -0.97 9.81 -39.63 -0.39 -1.36 16 25 C -0.01 -0.07 6.35 -39.05 -0.25 -0.32 16 26 Cl -0.02 -0.37 26.01 -51.86 -1.35 -1.72 16 27 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.09 2.45 6.07 -51.93 -0.32 2.13 16 30 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 31 H 0.39 6.76 6.57 -40.82 -0.27 6.49 16 32 H 0.14 1.72 5.04 -52.48 -0.26 1.46 16 33 H 0.17 1.62 7.00 -52.49 -0.37 1.25 16 34 H 0.14 1.22 8.06 -52.49 -0.42 0.80 16 35 H 0.14 1.05 8.06 -52.49 -0.42 0.63 16 36 H 0.16 1.09 7.00 -52.49 -0.37 0.73 16 37 H 0.14 0.95 6.69 -52.49 -0.35 0.59 16 38 H 0.15 1.13 8.06 -52.49 -0.42 0.71 16 LS Contribution 336.05 15.07 5.06 5.06 Total: -1.00 -30.84 336.05 -9.12 -39.96 By element: Atomic # 1 Polarization: 10.20 SS G_CDS: -3.98 Total: 6.21 kcal Atomic # 6 Polarization: -5.75 SS G_CDS: -4.07 Total: -9.82 kcal Atomic # 7 Polarization: -43.24 SS G_CDS: 0.17 Total: -43.07 kcal Atomic # 8 Polarization: -12.02 SS G_CDS: 0.07 Total: -11.95 kcal Atomic # 14 Polarization: 20.35 SS G_CDS: -5.02 Total: 15.32 kcal Atomic # 17 Polarization: -0.37 SS G_CDS: -1.35 Total: -1.72 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -30.84 -9.12 -39.96 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001565695103.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.838 kcal (2) G-P(sol) polarization free energy of solvation -30.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.961 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.877 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds