Wall clock time and date at job start Tue Mar 31 2020 12:03:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.50708 * 109.47141 * 119.99670 * 2 1 3 5 5 H 1.08000 * 119.99723 * 120.00060 * 4 2 1 6 6 C 1.37873 * 119.99930 * 300.00010 * 4 2 1 7 7 N 1.31509 * 120.00195 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99968 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.46809 * 0.02562 * 8 6 4 10 10 H 1.48501 * 109.46948 * 120.00245 * 8 6 4 11 11 H 1.48497 * 109.47378 * 240.00531 * 8 6 4 12 12 N 1.46500 * 109.47473 * 239.99757 * 2 1 3 13 13 C 1.34780 * 119.99910 * 85.00011 * 12 2 1 14 14 O 1.21569 * 119.99853 * 359.97438 * 13 12 2 15 15 C 1.47773 * 120.00069 * 180.02562 * 13 12 2 16 16 C 1.39543 * 120.12475 * 359.72670 * 15 13 12 17 17 C 1.38499 * 119.79874 * 179.77074 * 16 15 13 18 18 N 1.40262 * 119.97744 * 180.24921 * 17 16 15 19 19 C 1.36564 * 125.66733 * 359.94855 * 18 17 16 20 20 C 1.34856 * 108.19864 * 179.89122 * 19 18 17 21 21 C 1.40932 * 107.46976 * 0.36256 * 20 19 18 22 22 C 1.34856 * 107.46252 * 359.77477 * 21 20 19 23 23 C 1.38983 * 120.04779 * 0.50115 * 17 16 15 24 24 C 1.38160 * 120.24947 * 359.74657 * 23 17 16 25 25 C 1.38184 * 120.20310 * 359.97438 * 24 23 17 26 26 Cl 1.73607 * 120.02457 * 180.02562 * 25 24 23 27 27 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 29 29 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 30 30 H 0.97006 * 120.00358 * 179.97438 * 7 6 4 31 31 H 0.96994 * 119.99975 * 265.00388 * 12 2 1 32 32 H 1.08006 * 120.10354 * 0.02562 * 16 15 13 33 33 H 1.07998 * 125.89824 * 359.97438 * 19 18 17 34 34 H 1.08002 * 126.26293 * 180.13545 * 20 19 18 35 35 H 1.07997 * 126.26905 * 179.75386 * 21 20 19 36 36 H 1.08000 * 125.89883 * 179.97438 * 22 21 20 37 37 H 1.07995 * 119.86985 * 179.72520 * 23 17 16 38 38 H 1.07998 * 119.90096 * 179.97438 * 24 23 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2306 5 1 2.6533 -1.5885 1.1315 6 6 1.6993 -0.2393 2.4828 7 7 0.9428 0.8297 2.6034 8 14 2.3213 -1.1202 4.0081 9 1 3.1464 -2.2868 3.6039 10 1 3.1465 -0.1871 4.8166 11 1 1.1661 -1.5866 4.8161 12 7 2.0184 -0.6906 -1.1961 13 6 2.1471 -0.0183 -2.3571 14 8 1.8575 1.1611 -2.4118 15 6 2.6393 -0.7150 -3.5638 16 6 2.9768 -2.0677 -3.5028 17 6 3.4329 -2.7152 -4.6390 18 7 3.7683 -4.0760 -4.5831 19 6 3.6909 -4.8703 -3.4750 20 6 4.0939 -6.1109 -3.8171 21 6 4.4406 -6.0816 -5.1828 22 6 4.2319 -4.8252 -5.6264 23 6 3.5634 -2.0163 -5.8332 24 6 3.2346 -0.6758 -5.8946 25 6 2.7732 -0.0209 -4.7687 26 17 2.3608 1.6635 -4.8513 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 0.5139 0.8900 30 1 0.7081 1.1610 3.4844 31 1 2.2490 -1.6317 -1.1525 32 1 2.8789 -2.6090 -2.5733 33 1 3.3623 -4.5591 -2.4944 34 1 4.1454 -6.9690 -3.1632 35 1 4.8066 -6.9128 -5.7671 36 1 4.4025 -4.4725 -6.6328 37 1 3.9235 -2.5230 -6.7163 38 1 3.3386 -0.1380 -6.8254 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001565695103.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:03:27 Heat of formation + Delta-G solvation = 30.101278 kcal Electronic energy + Delta-G solvation = -23383.900844 eV Core-core repulsion = 19831.903478 eV Total energy + Delta-G solvation = -3551.997366 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.088 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.62980 -41.07254 -39.37059 -37.44920 -36.71830 -34.48171 -34.05382 -32.89150 -30.64243 -29.77504 -29.68570 -27.36392 -25.46809 -24.23400 -23.14233 -21.64300 -21.01676 -20.81125 -20.02675 -18.53242 -17.81162 -17.43856 -17.16454 -16.47125 -16.24568 -15.94110 -15.74940 -15.50636 -14.90281 -14.72717 -14.57116 -14.41192 -14.15908 -13.68332 -13.49941 -13.21634 -13.03060 -12.91149 -12.88285 -12.79318 -12.75681 -12.57632 -12.30940 -12.21224 -12.01894 -11.11508 -10.69591 -10.66111 -10.49633 -10.37915 -9.78782 -9.19231 -9.02025 -8.19072 -6.36649 -0.54371 -0.23404 1.11670 1.27010 1.43674 1.44850 1.56540 1.76496 1.94552 2.08650 2.27985 2.49485 2.62418 3.11865 3.39112 3.46742 3.83536 3.88671 4.03943 4.18884 4.30639 4.46090 4.55619 4.66522 4.72992 4.74243 4.87392 4.90074 4.95606 5.07140 5.30206 5.33898 5.36362 5.40470 5.56064 5.65103 5.86362 5.97777 6.07022 6.20743 6.41829 6.69531 6.84855 7.27952 7.43918 8.87488 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.010548 B = 0.004329 C = 0.003159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2653.880390 B = 6465.740357 C = 8861.493580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.273 3.727 3 H 0.003 0.997 4 C -0.547 4.547 5 H 0.073 0.927 6 C 0.016 3.984 7 N -0.916 5.916 8 Si 0.972 3.028 9 H -0.260 1.260 10 H -0.284 1.284 11 H -0.278 1.278 12 N -0.698 5.698 13 C 0.532 3.468 14 O -0.561 6.561 15 C -0.108 4.108 16 C -0.101 4.101 17 C 0.136 3.864 18 N -0.404 5.404 19 C -0.039 4.039 20 C -0.197 4.197 21 C -0.201 4.201 22 C -0.019 4.019 23 C -0.093 4.093 24 C -0.078 4.078 25 C -0.019 4.019 26 Cl -0.047 7.047 27 H 0.039 0.961 28 H 0.012 0.988 29 H 0.068 0.932 30 H 0.266 0.734 31 H 0.400 0.600 32 H 0.147 0.853 33 H 0.171 0.829 34 H 0.152 0.848 35 H 0.161 0.839 36 H 0.198 0.802 37 H 0.183 0.817 38 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.163 -12.425 -19.672 24.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.170 3.830 3 H 0.021 0.979 4 C -0.585 4.585 5 H 0.091 0.909 6 C -0.184 4.184 7 N -0.554 5.554 8 Si 0.796 3.204 9 H -0.183 1.183 10 H -0.210 1.210 11 H -0.204 1.204 12 N -0.347 5.347 13 C 0.319 3.681 14 O -0.441 6.441 15 C -0.113 4.113 16 C -0.121 4.121 17 C 0.043 3.957 18 N -0.077 5.077 19 C -0.165 4.165 20 C -0.221 4.221 21 C -0.225 4.225 22 C -0.145 4.145 23 C -0.112 4.112 24 C -0.097 4.097 25 C -0.048 4.048 26 Cl -0.017 7.017 27 H 0.058 0.942 28 H 0.031 0.969 29 H 0.087 0.913 30 H 0.075 0.925 31 H 0.236 0.764 32 H 0.164 0.836 33 H 0.188 0.812 34 H 0.170 0.830 35 H 0.178 0.822 36 H 0.215 0.785 37 H 0.200 0.800 38 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges 6.758 -11.060 -19.545 23.452 hybrid contribution -0.012 -0.169 1.415 1.425 sum 6.746 -11.229 -18.130 22.367 Atomic orbital electron populations 1.21897 0.98172 0.99452 0.99683 1.18386 0.91141 0.92055 0.81416 0.97910 1.21538 1.32650 1.13586 0.90706 0.90901 1.25771 0.94814 0.95543 1.02250 1.70053 1.36885 1.23904 1.24591 0.85304 0.78112 0.78539 0.78428 1.18337 1.21007 1.20376 1.46229 1.64891 1.14004 1.09592 1.18583 0.78825 0.86777 0.83920 1.90813 1.51550 1.16518 1.85195 1.19626 1.04054 0.94089 0.93502 1.20952 0.99662 0.92531 0.98987 1.17869 0.99756 0.82934 0.95165 1.41734 1.49730 1.05624 1.10586 1.22305 1.09903 0.91681 0.92595 1.21340 1.06588 0.96951 0.97257 1.21364 1.08025 0.97372 0.95713 1.22498 1.06085 0.91664 0.94223 1.21304 0.99450 0.93415 0.97066 1.21226 0.96863 0.93972 0.97633 1.21301 1.01668 0.87203 0.94629 1.98416 1.91562 1.13492 1.98265 0.94168 0.96871 0.91312 0.92512 0.76396 0.83579 0.81153 0.82988 0.82173 0.78514 0.79981 0.80217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.80 9.26 71.98 0.67 -6.14 16 2 C 0.27 14.21 2.56 44.25 0.11 14.32 16 3 H 0.00 0.18 7.58 -2.39 -0.02 0.17 16 4 C -0.55 -28.81 8.73 25.60 0.22 -28.58 16 5 H 0.07 3.58 7.74 -2.91 -0.02 3.56 16 6 C 0.02 0.88 5.30 84.65 0.45 1.33 16 7 N -0.92 -52.42 11.32 21.44 0.24 -52.18 16 8 Si 0.97 41.81 29.54 68.60 2.03 43.83 16 9 H -0.26 -10.53 7.11 99.48 0.71 -9.82 16 10 H -0.28 -12.23 7.11 99.48 0.71 -11.53 16 11 H -0.28 -11.72 7.11 99.48 0.71 -11.01 16 12 N -0.70 -29.49 5.02 -449.02 -2.25 -31.74 16 13 C 0.53 22.07 7.73 86.76 0.67 22.75 16 14 O -0.56 -27.33 13.62 -3.93 -0.05 -27.38 16 15 C -0.11 -3.39 5.87 -20.09 -0.12 -3.51 16 16 C -0.10 -2.54 8.94 22.65 0.20 -2.34 16 17 C 0.14 2.76 6.61 38.03 0.25 3.01 16 18 N -0.40 -7.85 2.97 -346.77 -1.03 -8.88 16 19 C -0.04 -0.80 10.73 83.18 0.89 0.09 16 20 C -0.20 -3.68 10.86 22.15 0.24 -3.44 16 21 C -0.20 -3.24 10.86 22.15 0.24 -2.99 16 22 C -0.02 -0.30 10.73 83.18 0.89 0.60 16 23 C -0.09 -1.39 9.44 22.43 0.21 -1.18 16 24 C -0.08 -1.38 9.81 22.24 0.22 -1.16 16 25 C -0.02 -0.54 6.35 22.61 0.14 -0.39 16 26 Cl -0.05 -1.48 26.01 -2.72 -0.07 -1.55 16 27 H 0.04 1.88 8.14 -2.39 -0.02 1.86 16 28 H 0.01 0.63 8.14 -2.39 -0.02 0.61 16 29 H 0.07 3.83 6.07 -2.38 -0.01 3.81 16 30 H 0.27 14.35 8.31 -92.70 -0.77 13.58 16 31 H 0.40 14.27 6.57 -92.71 -0.61 13.66 16 32 H 0.15 3.45 5.04 -2.91 -0.01 3.44 16 33 H 0.17 3.17 7.00 -2.91 -0.02 3.15 16 34 H 0.15 2.35 8.06 -2.91 -0.02 2.32 16 35 H 0.16 1.82 8.06 -2.91 -0.02 1.79 16 36 H 0.20 1.46 7.00 -2.91 -0.02 1.44 16 37 H 0.18 1.23 6.69 -2.91 -0.02 1.21 16 38 H 0.18 1.96 8.06 -2.91 -0.02 1.94 16 Total: -1.00 -70.03 336.05 4.66 -65.37 By element: Atomic # 1 Polarization: 19.67 SS G_CDS: 0.50 Total: 20.17 kcal Atomic # 6 Polarization: -12.93 SS G_CDS: 5.30 Total: -7.63 kcal Atomic # 7 Polarization: -89.76 SS G_CDS: -3.04 Total: -92.81 kcal Atomic # 8 Polarization: -27.33 SS G_CDS: -0.05 Total: -27.38 kcal Atomic # 14 Polarization: 41.81 SS G_CDS: 2.03 Total: 43.83 kcal Atomic # 17 Polarization: -1.48 SS G_CDS: -0.07 Total: -1.55 kcal Total: -70.03 4.66 -65.37 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001565695103.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.469 kcal (2) G-P(sol) polarization free energy of solvation -70.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.660 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.368 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds