Wall clock time and date at job start Tue Mar 31 2020 12:58:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86804 * 120.00136 * 2 1 4 4 H 1.48490 * 109.47050 * 270.00269 * 3 2 1 5 5 H 1.48505 * 109.46646 * 29.99994 * 3 2 1 6 6 H 1.48501 * 109.47089 * 149.99581 * 3 2 1 7 7 C 1.37882 * 120.00140 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99630 * 0.02562 * 7 2 1 9 9 C 1.50701 * 119.99989 * 179.97438 * 7 2 1 10 10 C 1.50695 * 109.46954 * 180.02562 * 9 7 2 11 11 C 1.38283 * 119.92770 * 90.00317 * 10 9 7 12 12 C 1.38117 * 120.07107 * 179.97438 * 11 10 9 13 13 C 1.38878 * 119.92705 * 0.02562 * 12 11 10 14 14 N 1.39928 * 120.06767 * 180.02562 * 13 12 11 15 15 C 1.34779 * 119.99965 * 146.82061 * 14 13 12 16 16 O 1.21286 * 119.99867 * 354.72819 * 15 14 13 17 17 C 1.50693 * 119.99732 * 174.99869 * 15 14 13 18 18 H 1.08996 * 110.86563 * 304.02463 * 17 15 14 19 19 C 1.54738 * 110.97391 * 67.82843 * 17 15 14 20 20 C 1.51685 * 102.55188 * 142.32899 * 19 17 15 21 21 C 1.47479 * 125.86509 * 164.60827 * 20 19 17 22 22 O 1.21463 * 119.99894 * 0.02562 * 21 20 19 23 23 O 1.34753 * 120.00083 * 179.97438 * 21 20 19 24 24 N 1.29052 * 108.27053 * 344.60633 * 20 19 17 25 25 O 1.41442 * 112.89535 * 359.71325 * 24 20 19 26 26 C 1.38871 * 119.85952 * 0.26531 * 13 12 11 27 27 C 1.38121 * 119.92735 * 359.43294 * 26 13 12 28 28 H 0.96997 * 120.00300 * 359.97438 * 1 2 3 29 29 H 1.09001 * 109.47094 * 60.00658 * 9 7 2 30 30 H 1.09005 * 109.47421 * 300.00451 * 9 7 2 31 31 H 1.08003 * 119.96878 * 0.02562 * 11 10 9 32 32 H 1.07995 * 120.03564 * 180.02562 * 12 11 10 33 33 H 0.97003 * 119.99564 * 326.81295 * 14 13 12 34 34 H 1.09008 * 110.79258 * 260.59238 * 19 17 15 35 35 H 1.09003 * 110.79161 * 23.87022 * 19 17 15 36 36 H 0.96694 * 117.00308 * 179.97438 * 23 21 20 37 37 H 1.08000 * 120.03188 * 179.72895 * 26 13 12 38 38 H 1.07997 * 119.96171 * 180.29368 * 27 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5116 -1.1940 0.0000 10 6 4.0139 -2.6148 0.0001 11 6 4.2435 -3.2655 -1.1983 12 6 4.7043 -4.5675 -1.2017 13 6 4.9367 -5.2233 0.0003 14 7 5.4041 -6.5422 0.0003 15 6 6.2313 -6.9640 0.9773 16 8 6.6467 -6.1774 1.8018 17 6 6.6447 -8.4117 1.0416 18 1 5.7720 -9.0631 1.0862 19 6 7.5519 -8.7823 -0.1559 20 6 8.5565 -9.7294 0.4724 21 6 9.4617 -10.6370 -0.2570 22 8 9.4418 -10.6679 -1.4711 23 8 10.3115 -11.4312 0.4234 24 7 8.4831 -9.6046 1.7548 25 8 7.5232 -8.6483 2.1605 26 6 4.6994 -4.5691 1.2020 27 6 4.2445 -3.2650 1.1985 28 1 -0.4850 0.8400 0.0004 29 1 3.8752 -0.6797 0.8895 30 1 3.8746 -0.6807 -0.8905 31 1 4.0630 -2.7548 -2.1327 32 1 4.8838 -5.0750 -2.1379 33 1 5.1328 -7.1529 -0.7028 34 1 6.9788 -9.2867 -0.9340 35 1 8.0472 -7.8970 -0.5546 36 1 10.8849 -12.0092 -0.0981 37 1 4.8750 -5.0779 2.1383 38 1 4.0643 -2.7541 2.1328 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001574480634.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:58:38 Heat of formation + Delta-G solvation = -63.242727 kcal Electronic energy + Delta-G solvation = -24759.218880 eV Core-core repulsion = 20762.464650 eV Total energy + Delta-G solvation = -3996.754231 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.109 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.65874 -40.72759 -39.84974 -38.21325 -36.93812 -35.21187 -33.89820 -33.13190 -32.02013 -30.64178 -30.45206 -27.33056 -26.04674 -25.22999 -23.02335 -22.53512 -21.24237 -20.94118 -20.14645 -18.94914 -18.41318 -18.11991 -17.13672 -16.79611 -16.62671 -16.48538 -16.03574 -15.41971 -14.99028 -14.86073 -14.23176 -14.14231 -13.99578 -13.82460 -13.48776 -13.27857 -12.98160 -12.81594 -12.49863 -12.43274 -12.34058 -11.89208 -11.70041 -11.68830 -11.60464 -10.96998 -10.72450 -10.49320 -10.35913 -10.15697 -9.94137 -9.65595 -9.36783 -8.60741 -8.44497 -7.55902 -6.09793 -4.09144 -0.00915 1.41570 1.66941 1.90392 1.93489 2.08073 2.35739 2.88149 3.27294 3.35592 3.38653 3.41024 3.59481 3.94374 4.04114 4.27001 4.34563 4.39683 4.56383 4.81490 4.85356 5.20832 5.28515 5.39701 5.54442 5.71089 5.81487 5.89936 6.02335 6.17674 6.46278 6.56909 6.65346 6.88844 6.97672 6.99477 7.00118 7.20040 7.46928 7.53973 7.67293 7.81741 8.46542 8.95063 9.50423 11.02986 Molecular weight = 318.11amu Principal moments of inertia in cm(-1) A = 0.038523 B = 0.002112 C = 0.002073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 726.657972 B =13255.914148 C =13503.104508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.069 3.931 3 Si 0.878 3.122 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.264 1.264 7 C -0.513 4.513 8 H 0.074 0.926 9 C 0.013 3.987 10 C -0.034 4.034 11 C -0.105 4.105 12 C -0.138 4.138 13 C 0.103 3.897 14 N -0.658 5.658 15 C 0.515 3.485 16 O -0.489 6.489 17 C 0.025 3.975 18 H 0.128 0.872 19 C -0.122 4.122 20 C 0.055 3.945 21 C 0.567 3.433 22 O -0.482 6.482 23 O -0.493 6.493 24 N -0.198 5.198 25 O -0.140 6.140 26 C -0.115 4.115 27 C -0.104 4.104 28 H 0.264 0.736 29 H 0.029 0.971 30 H 0.024 0.976 31 H 0.125 0.875 32 H 0.118 0.882 33 H 0.408 0.592 34 H 0.127 0.873 35 H 0.120 0.880 36 H 0.425 0.575 37 H 0.125 0.875 38 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.358 -23.286 -3.018 29.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.133 4.133 3 Si 0.705 3.295 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.189 1.189 7 C -0.551 4.551 8 H 0.092 0.908 9 C -0.024 4.024 10 C -0.034 4.034 11 C -0.124 4.124 12 C -0.158 4.158 13 C 0.012 3.988 14 N -0.305 5.305 15 C 0.298 3.702 16 O -0.361 6.361 17 C -0.037 4.037 18 H 0.146 0.854 19 C -0.162 4.162 20 C -0.138 4.138 21 C 0.406 3.594 22 O -0.366 6.366 23 O -0.305 6.305 24 N 0.060 4.940 25 O -0.164 6.164 26 C -0.135 4.135 27 C -0.123 4.123 28 H 0.074 0.926 29 H 0.047 0.953 30 H 0.042 0.958 31 H 0.143 0.857 32 H 0.136 0.864 33 H 0.244 0.756 34 H 0.146 0.854 35 H 0.139 0.861 36 H 0.286 0.714 37 H 0.143 0.857 38 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 17.673 -22.670 -1.378 28.778 hybrid contribution 0.055 0.421 -1.455 1.516 sum 17.728 -22.248 -2.833 28.589 Atomic orbital electron populations 1.69894 1.06252 1.27009 1.50607 1.25005 0.94752 0.99053 0.94475 0.86805 0.80445 0.83645 0.78631 1.20169 1.21243 1.18886 1.20919 0.88182 0.94659 1.51360 0.90794 1.18827 0.97481 0.88591 0.97497 1.20347 0.92804 0.98164 0.92118 1.20882 0.99396 0.93614 0.98510 1.20726 1.04128 0.95433 0.95507 1.17468 1.02814 0.83940 0.94615 1.43196 1.47259 1.12032 1.28022 1.19839 0.79385 0.88516 0.82479 1.90829 1.52298 1.54444 1.38527 1.23729 0.96428 0.96772 0.86764 0.85418 1.22838 0.94349 0.99372 0.99599 1.24645 0.98580 0.97706 0.92842 1.19062 0.78005 0.77863 0.84471 1.91005 1.66705 1.65175 1.13734 1.84633 1.49385 1.51893 1.44550 1.78677 1.02372 0.99549 1.13388 1.91509 1.38286 1.55994 1.30645 1.20994 1.00093 0.95659 0.96710 1.20987 0.98896 0.93838 0.98543 0.92582 0.95283 0.95758 0.85722 0.86440 0.75641 0.85441 0.86146 0.71403 0.85667 0.85789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.20 13.96 55.43 0.77 -26.43 16 2 C 0.07 1.96 5.47 -17.82 -0.10 1.86 16 3 Si 0.88 21.16 27.47 -169.99 -4.67 16.49 16 4 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 5 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 6 H -0.26 -6.12 6.54 56.52 0.37 -5.76 16 7 C -0.51 -14.29 9.65 -34.44 -0.33 -14.62 16 8 H 0.07 2.25 7.98 -52.49 -0.42 1.83 16 9 C 0.01 0.31 4.17 -29.04 -0.12 0.19 16 10 C -0.03 -0.69 5.07 -104.59 -0.53 -1.22 16 11 C -0.11 -1.87 9.69 -39.61 -0.38 -2.25 16 12 C -0.14 -2.01 9.96 -39.39 -0.39 -2.40 16 13 C 0.10 1.52 6.28 -83.69 -0.53 1.00 16 14 N -0.66 -6.77 5.34 -9.86 -0.05 -6.82 16 15 C 0.51 5.89 6.87 -10.99 -0.08 5.81 16 16 O -0.49 -7.99 14.28 -13.31 -0.19 -8.18 16 17 C 0.03 0.20 4.23 -26.97 -0.11 0.09 16 18 H 0.13 0.61 8.14 -51.93 -0.42 0.19 16 19 C -0.12 -0.69 6.44 -26.48 -0.17 -0.86 16 20 C 0.06 0.41 7.30 -79.51 -0.58 -0.17 16 21 C 0.57 3.68 8.34 34.50 0.29 3.97 16 22 O -0.48 -3.96 17.74 -19.24 -0.34 -4.30 16 23 O -0.49 -2.21 13.43 -40.64 -0.55 -2.76 16 24 N -0.20 -1.97 12.51 35.26 0.44 -1.53 16 25 O -0.14 -1.61 11.83 -30.26 -0.36 -1.97 16 26 C -0.11 -1.98 8.66 -39.39 -0.34 -2.32 16 27 C -0.10 -2.00 9.69 -39.61 -0.38 -2.38 16 28 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 29 H 0.03 0.68 7.14 -51.93 -0.37 0.31 16 30 H 0.02 0.55 7.51 -51.93 -0.39 0.16 16 31 H 0.12 2.08 8.06 -52.48 -0.42 1.66 16 32 H 0.12 1.30 8.06 -52.49 -0.42 0.87 16 33 H 0.41 2.46 8.82 -40.82 -0.36 2.10 16 34 H 0.13 0.32 8.14 -51.92 -0.42 -0.10 16 35 H 0.12 0.70 7.90 -51.93 -0.41 0.29 16 36 H 0.43 -0.31 9.11 45.56 0.42 0.10 16 37 H 0.13 2.14 6.43 -52.49 -0.34 1.81 16 38 H 0.12 2.32 8.06 -52.49 -0.42 1.90 16 LS Contribution 342.79 15.07 5.17 5.17 Total: -1.00 -37.05 342.79 -6.69 -43.74 By element: Atomic # 1 Polarization: 3.07 SS G_CDS: -3.15 Total: -0.09 kcal Atomic # 6 Polarization: -9.55 SS G_CDS: -3.76 Total: -13.31 kcal Atomic # 7 Polarization: -35.95 SS G_CDS: 1.16 Total: -34.79 kcal Atomic # 8 Polarization: -15.77 SS G_CDS: -1.43 Total: -17.21 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -4.67 Total: 16.49 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -37.05 -6.69 -43.74 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001574480634.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.502 kcal (2) G-P(sol) polarization free energy of solvation -37.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.741 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds