Wall clock time and date at job start Tue Mar 31 2020 12:58:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86799 * 119.99739 * 2 1 4 4 H 1.48506 * 109.47169 * 269.99880 * 3 2 1 5 5 H 1.48503 * 109.47591 * 30.00218 * 3 2 1 6 6 H 1.48499 * 109.47018 * 150.00466 * 3 2 1 7 7 C 1.37876 * 119.99914 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99624 * 179.97438 * 7 2 1 9 9 C 1.50693 * 120.00134 * 359.97438 * 7 2 1 10 10 C 1.50699 * 109.47207 * 180.02562 * 9 7 2 11 11 C 1.38281 * 119.93620 * 89.99553 * 10 9 7 12 12 C 1.38100 * 120.07272 * 179.97438 * 11 10 9 13 13 C 1.38870 * 119.93353 * 0.02658 * 12 11 10 14 14 N 1.39928 * 120.07463 * 179.97438 * 13 12 11 15 15 C 1.34769 * 119.99880 * 33.38827 * 14 13 12 16 16 O 1.21282 * 120.00335 * 5.09182 * 15 14 13 17 17 C 1.50699 * 119.99885 * 185.09326 * 15 14 13 18 18 H 1.09001 * 110.86578 * 55.70241 * 17 15 14 19 19 C 1.54739 * 110.97396 * 291.89905 * 17 15 14 20 20 C 1.51744 * 102.52140 * 217.69263 * 19 17 15 21 21 C 1.47481 * 125.85326 * 195.31960 * 20 19 17 22 22 O 1.21475 * 119.99732 * 0.02562 * 21 20 19 23 23 O 1.34755 * 120.00455 * 180.02562 * 21 20 19 24 24 N 1.29052 * 108.28847 * 15.34559 * 20 19 17 25 25 O 1.41390 * 112.87708 * 0.34499 * 24 20 19 26 26 C 1.38876 * 119.85784 * 0.24842 * 13 12 11 27 27 C 1.38120 * 119.92547 * 359.47295 * 26 13 12 28 28 H 0.97003 * 120.00295 * 359.97438 * 1 2 3 29 29 H 1.08998 * 109.47362 * 59.99668 * 9 7 2 30 30 H 1.09002 * 109.47016 * 299.99578 * 9 7 2 31 31 H 1.07996 * 119.95831 * 359.97438 * 11 10 9 32 32 H 1.08005 * 120.03550 * 180.02562 * 12 11 10 33 33 H 0.97005 * 119.99799 * 213.11849 * 14 13 12 34 34 H 1.08997 * 110.79437 * 335.93825 * 19 17 15 35 35 H 1.09003 * 110.79195 * 99.40425 * 19 17 15 36 36 H 0.96698 * 117.00361 * 180.02562 * 23 21 20 37 37 H 1.07999 * 120.03815 * 179.74582 * 26 13 12 38 38 H 1.08000 * 119.96462 * 180.27147 * 27 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.6999 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 6 2.2303 -3.6445 -0.0005 11 6 2.6788 -4.1690 1.1978 12 6 3.5758 -5.2190 1.2011 13 6 4.0279 -5.7479 -0.0007 14 7 4.9372 -6.8115 -0.0008 15 6 4.8870 -7.7411 0.9737 16 8 3.9977 -7.7084 1.7977 17 6 5.9358 -8.8212 1.0395 18 1 6.9356 -8.3893 1.0840 19 6 5.8054 -9.7935 -0.1572 20 6 6.1250 -11.1362 0.4735 21 6 6.4593 -12.3746 -0.2541 22 8 6.4964 -12.3745 -1.4683 23 8 6.7237 -13.5064 0.4279 24 7 6.0536 -11.0085 1.7557 25 8 5.7027 -9.6996 2.1591 26 6 3.5801 -5.2153 -1.2025 27 6 2.6785 -4.1689 -1.1990 28 1 -0.4851 0.8400 0.0004 29 1 0.6240 -2.5567 -0.8902 30 1 0.6248 -2.5571 0.8897 31 1 2.3272 -3.7569 2.1321 32 1 3.9254 -5.6284 2.1374 33 1 5.6012 -6.8819 -0.7045 34 1 4.7904 -9.7844 -0.5543 35 1 6.5286 -9.5488 -0.9352 36 1 6.9381 -14.2927 -0.0925 37 1 3.9329 -5.6217 -2.1389 38 1 2.3264 -3.7572 -2.1333 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001574480635.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:58:41 Heat of formation + Delta-G solvation = -67.413273 kcal Electronic energy + Delta-G solvation = -24729.997169 eV Core-core repulsion = 20733.062090 eV Total energy + Delta-G solvation = -3996.935079 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.109 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.64030 -40.70507 -39.81634 -38.14150 -36.92561 -35.15101 -33.88045 -33.17274 -31.98860 -30.42669 -30.28704 -26.95108 -26.02206 -25.17009 -23.22036 -22.51042 -21.27631 -20.96690 -20.16919 -18.93547 -18.38090 -18.10395 -17.09272 -16.61286 -16.47007 -16.32855 -16.00754 -15.38282 -14.96653 -14.82760 -14.30505 -14.13523 -13.98075 -13.78304 -13.45570 -13.13248 -12.90579 -12.82890 -12.56446 -12.34158 -12.08836 -11.87724 -11.67750 -11.46504 -11.32739 -10.90876 -10.73011 -10.59522 -10.41985 -10.17117 -9.94090 -9.50170 -9.34238 -8.44931 -8.38171 -7.50956 -6.05973 -4.10298 0.00410 1.44216 1.71488 1.94763 1.96734 2.10223 2.40261 2.90816 3.28690 3.35284 3.39104 3.42641 3.61175 3.95962 4.06193 4.29030 4.33998 4.50462 4.57707 4.83256 4.86779 5.27586 5.33031 5.45731 5.55516 5.76313 5.92606 5.99666 6.11301 6.19606 6.55255 6.63073 6.74782 7.01192 7.08494 7.13092 7.25182 7.46584 7.60707 7.81324 7.86006 7.89473 8.29132 8.94900 9.53577 11.03636 Molecular weight = 318.11amu Principal moments of inertia in cm(-1) A = 0.037906 B = 0.002080 C = 0.002045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 738.483227 B =13455.129531 C =13688.187628 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.058 3.942 3 Si 0.896 3.104 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.512 4.512 8 H 0.057 0.943 9 C 0.047 3.953 10 C -0.038 4.038 11 C -0.107 4.107 12 C -0.115 4.115 13 C 0.099 3.901 14 N -0.658 5.658 15 C 0.514 3.486 16 O -0.489 6.489 17 C 0.025 3.975 18 H 0.128 0.872 19 C -0.122 4.122 20 C 0.055 3.945 21 C 0.567 3.433 22 O -0.483 6.483 23 O -0.493 6.493 24 N -0.198 5.198 25 O -0.140 6.140 26 C -0.139 4.139 27 C -0.108 4.108 28 H 0.262 0.738 29 H 0.030 0.970 30 H 0.030 0.970 31 H 0.123 0.877 32 H 0.124 0.876 33 H 0.407 0.593 34 H 0.120 0.880 35 H 0.127 0.873 36 H 0.425 0.575 37 H 0.116 0.884 38 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.807 -23.735 -3.035 28.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.144 4.144 3 Si 0.723 3.277 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.550 4.550 8 H 0.076 0.924 9 C 0.010 3.990 10 C -0.038 4.038 11 C -0.126 4.126 12 C -0.135 4.135 13 C 0.007 3.993 14 N -0.305 5.305 15 C 0.297 3.703 16 O -0.361 6.361 17 C -0.037 4.037 18 H 0.145 0.855 19 C -0.161 4.161 20 C -0.138 4.138 21 C 0.406 3.594 22 O -0.366 6.366 23 O -0.305 6.305 24 N 0.060 4.940 25 O -0.164 6.164 26 C -0.159 4.159 27 C -0.127 4.127 28 H 0.072 0.928 29 H 0.048 0.952 30 H 0.048 0.952 31 H 0.141 0.859 32 H 0.142 0.858 33 H 0.243 0.757 34 H 0.139 0.861 35 H 0.145 0.855 36 H 0.286 0.714 37 H 0.134 0.866 38 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 14.983 -23.779 -1.391 28.140 hybrid contribution 0.931 0.886 -1.447 1.936 sum 15.914 -22.892 -2.838 28.024 Atomic orbital electron populations 1.69956 1.06031 1.26853 1.50373 1.25021 0.94895 0.99283 0.95192 0.86531 0.79832 0.83158 0.78144 1.20604 1.21160 1.19816 1.21045 0.93026 0.89817 1.51121 0.92446 1.18372 0.92578 0.89552 0.98523 1.20765 0.96152 0.95073 0.91838 1.21014 0.97358 0.95509 0.98682 1.20992 0.99315 0.96596 0.96608 1.17451 0.96451 0.90735 0.94626 1.43186 1.34932 1.24257 1.28091 1.19829 0.85803 0.82111 0.82557 1.90830 1.33867 1.72853 1.38522 1.23735 1.00687 0.92533 0.86742 0.85473 1.22852 1.07239 0.86435 0.99597 1.24666 1.01208 0.95093 0.92849 1.19070 0.73675 0.82191 0.84467 1.91007 1.46835 1.85058 1.13736 1.84635 1.80726 1.20569 1.44531 1.78665 1.02257 0.99645 1.13426 1.91500 1.84364 1.09874 1.30690 1.20730 1.00086 0.99662 0.95394 1.20913 0.97274 0.95841 0.98647 0.92811 0.95225 0.95201 0.85886 0.85807 0.75731 0.86142 0.85451 0.71412 0.86608 0.85817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.16 13.29 55.43 0.74 -25.42 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.90 21.28 29.54 -169.99 -5.02 16.26 16 4 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 5 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 6 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 7 C -0.51 -14.08 9.09 -34.44 -0.31 -14.40 16 8 H 0.06 1.56 7.74 -52.48 -0.41 1.16 16 9 C 0.05 1.18 5.10 -29.04 -0.15 1.03 16 10 C -0.04 -0.80 5.07 -104.59 -0.53 -1.33 16 11 C -0.11 -2.12 9.69 -39.62 -0.38 -2.50 16 12 C -0.12 -2.03 8.66 -39.40 -0.34 -2.37 16 13 C 0.10 1.49 6.28 -83.69 -0.53 0.96 16 14 N -0.66 -6.94 5.34 -9.86 -0.05 -6.99 16 15 C 0.51 6.02 6.88 -10.99 -0.08 5.94 16 16 O -0.49 -8.16 14.27 -13.31 -0.19 -8.35 16 17 C 0.03 0.21 4.23 -26.97 -0.11 0.09 16 18 H 0.13 0.62 8.14 -51.93 -0.42 0.20 16 19 C -0.12 -0.71 6.44 -26.45 -0.17 -0.88 16 20 C 0.05 0.41 7.30 -79.48 -0.58 -0.17 16 21 C 0.57 3.76 8.34 34.50 0.29 4.05 16 22 O -0.48 -4.03 17.74 -19.24 -0.34 -4.37 16 23 O -0.49 -2.27 13.43 -40.64 -0.55 -2.81 16 24 N -0.20 -2.01 12.51 35.27 0.44 -1.57 16 25 O -0.14 -1.64 11.82 -30.23 -0.36 -2.00 16 26 C -0.14 -2.07 9.96 -39.39 -0.39 -2.47 16 27 C -0.11 -1.98 9.69 -39.61 -0.38 -2.36 16 28 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 29 H 0.03 0.78 8.08 -51.93 -0.42 0.36 16 30 H 0.03 0.80 8.08 -51.93 -0.42 0.38 16 31 H 0.12 2.40 8.06 -52.49 -0.42 1.97 16 32 H 0.12 2.16 6.42 -52.48 -0.34 1.83 16 33 H 0.41 2.53 8.82 -40.82 -0.36 2.17 16 34 H 0.12 0.73 7.90 -51.93 -0.41 0.32 16 35 H 0.13 0.34 8.14 -51.93 -0.42 -0.09 16 36 H 0.43 -0.26 9.11 45.56 0.42 0.15 16 37 H 0.12 1.32 8.06 -52.49 -0.42 0.90 16 38 H 0.12 2.17 8.06 -52.49 -0.42 1.74 16 LS Contribution 346.37 15.07 5.22 5.22 Total: -1.00 -36.32 346.37 -7.07 -43.38 By element: Atomic # 1 Polarization: 2.73 SS G_CDS: -3.19 Total: -0.46 kcal Atomic # 6 Polarization: -9.12 SS G_CDS: -3.77 Total: -12.89 kcal Atomic # 7 Polarization: -35.10 SS G_CDS: 1.12 Total: -33.97 kcal Atomic # 8 Polarization: -16.10 SS G_CDS: -1.43 Total: -17.53 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -36.32 -7.07 -43.38 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001574480635.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.032 kcal (2) G-P(sol) polarization free energy of solvation -36.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.382 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds