Wall clock time and date at job start Tue Mar 31 2020 12:58:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86799 * 119.99739 * 2 1 4 4 H 1.48506 * 109.47169 * 269.99880 * 3 2 1 5 5 H 1.48503 * 109.47591 * 30.00218 * 3 2 1 6 6 H 1.48499 * 109.47018 * 150.00466 * 3 2 1 7 7 C 1.37876 * 119.99914 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99624 * 179.97438 * 7 2 1 9 9 C 1.50693 * 120.00134 * 359.97438 * 7 2 1 10 10 C 1.50699 * 109.47207 * 180.02562 * 9 7 2 11 11 C 1.38281 * 119.93620 * 89.99553 * 10 9 7 12 12 C 1.38100 * 120.07272 * 179.97438 * 11 10 9 13 13 C 1.38870 * 119.93353 * 0.02658 * 12 11 10 14 14 N 1.39928 * 120.07463 * 179.97438 * 13 12 11 15 15 C 1.34769 * 119.99880 * 33.38827 * 14 13 12 16 16 O 1.21282 * 120.00335 * 5.09182 * 15 14 13 17 17 C 1.50699 * 119.99885 * 185.09326 * 15 14 13 18 18 H 1.09001 * 110.86578 * 55.70241 * 17 15 14 19 19 C 1.54739 * 110.97396 * 291.89905 * 17 15 14 20 20 C 1.51744 * 102.52140 * 217.69263 * 19 17 15 21 21 C 1.47481 * 125.85326 * 195.31960 * 20 19 17 22 22 O 1.21475 * 119.99732 * 0.02562 * 21 20 19 23 23 O 1.34755 * 120.00455 * 180.02562 * 21 20 19 24 24 N 1.29052 * 108.28847 * 15.34559 * 20 19 17 25 25 O 1.41390 * 112.87708 * 0.34499 * 24 20 19 26 26 C 1.38876 * 119.85784 * 0.24842 * 13 12 11 27 27 C 1.38120 * 119.92547 * 359.47295 * 26 13 12 28 28 H 0.97003 * 120.00295 * 359.97438 * 1 2 3 29 29 H 1.08998 * 109.47362 * 59.99668 * 9 7 2 30 30 H 1.09002 * 109.47016 * 299.99578 * 9 7 2 31 31 H 1.07996 * 119.95831 * 359.97438 * 11 10 9 32 32 H 1.08005 * 120.03550 * 180.02562 * 12 11 10 33 33 H 0.97005 * 119.99799 * 213.11849 * 14 13 12 34 34 H 1.08997 * 110.79437 * 335.93825 * 19 17 15 35 35 H 1.09003 * 110.79195 * 99.40425 * 19 17 15 36 36 H 0.96698 * 117.00361 * 180.02562 * 23 21 20 37 37 H 1.07999 * 120.03815 * 179.74582 * 26 13 12 38 38 H 1.08000 * 119.96462 * 180.27147 * 27 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.6999 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 6 2.2303 -3.6445 -0.0005 11 6 2.6788 -4.1690 1.1978 12 6 3.5758 -5.2190 1.2011 13 6 4.0279 -5.7479 -0.0007 14 7 4.9372 -6.8115 -0.0008 15 6 4.8870 -7.7411 0.9737 16 8 3.9977 -7.7084 1.7977 17 6 5.9358 -8.8212 1.0395 18 1 6.9356 -8.3893 1.0840 19 6 5.8054 -9.7935 -0.1572 20 6 6.1250 -11.1362 0.4735 21 6 6.4593 -12.3746 -0.2541 22 8 6.4964 -12.3745 -1.4683 23 8 6.7237 -13.5064 0.4279 24 7 6.0536 -11.0085 1.7557 25 8 5.7027 -9.6996 2.1591 26 6 3.5801 -5.2153 -1.2025 27 6 2.6785 -4.1689 -1.1990 28 1 -0.4851 0.8400 0.0004 29 1 0.6240 -2.5567 -0.8902 30 1 0.6248 -2.5571 0.8897 31 1 2.3272 -3.7569 2.1321 32 1 3.9254 -5.6284 2.1374 33 1 5.6012 -6.8819 -0.7045 34 1 4.7904 -9.7844 -0.5543 35 1 6.5286 -9.5488 -0.9352 36 1 6.9381 -14.2927 -0.0925 37 1 3.9329 -5.6217 -2.1389 38 1 2.3264 -3.7572 -2.1333 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001574480635.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:58:40 Heat of formation + Delta-G solvation = -93.698989 kcal Electronic energy + Delta-G solvation = -24731.137003 eV Core-core repulsion = 20733.062090 eV Total energy + Delta-G solvation = -3998.074913 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.109 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.33905 -41.42468 -40.67014 -39.41123 -37.36807 -36.41387 -35.05276 -34.53550 -33.00001 -31.81104 -31.69430 -28.55266 -26.62998 -26.11902 -24.83214 -23.87332 -22.38321 -21.61197 -21.42511 -19.49745 -19.21671 -18.70885 -18.50353 -18.11602 -17.14740 -17.12491 -16.82924 -16.75941 -16.28475 -15.94556 -15.69265 -15.19024 -14.73439 -14.53343 -14.48242 -14.44783 -14.23549 -14.06625 -13.71040 -13.38039 -13.25916 -13.09972 -12.78166 -12.61406 -12.47518 -12.45196 -12.20276 -12.05615 -11.72365 -11.58497 -11.39570 -11.07364 -10.76475 -10.59750 -9.78058 -8.92720 -8.18140 -6.32640 -0.55173 0.34137 0.55751 0.95463 1.30685 1.40614 1.41942 1.44876 1.52212 1.53736 2.18750 2.40451 2.83195 2.97386 3.06191 3.11491 3.36583 3.57207 3.75981 4.05010 4.12948 4.16063 4.37666 4.38532 4.47513 4.58576 4.63260 4.67956 5.10835 5.19762 5.29475 5.32522 5.39847 5.42105 5.58117 5.63849 5.75715 6.07452 6.10298 6.22878 6.31171 6.70821 6.80281 6.96484 7.35875 8.90085 Molecular weight = 318.11amu Principal moments of inertia in cm(-1) A = 0.037906 B = 0.002080 C = 0.002045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 738.483227 B =13455.129531 C =13688.187628 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.001 3.999 3 Si 0.967 3.033 4 H -0.268 1.268 5 H -0.282 1.282 6 H -0.266 1.266 7 C -0.526 4.526 8 H 0.057 0.943 9 C 0.055 3.945 10 C -0.072 4.072 11 C -0.122 4.122 12 C -0.124 4.124 13 C 0.118 3.882 14 N -0.639 5.639 15 C 0.516 3.484 16 O -0.545 6.545 17 C 0.031 3.969 18 H 0.167 0.833 19 C -0.118 4.118 20 C 0.069 3.931 21 C 0.576 3.424 22 O -0.498 6.498 23 O -0.493 6.493 24 N -0.228 5.228 25 O -0.181 6.181 26 C -0.119 4.119 27 C -0.114 4.114 28 H 0.265 0.735 29 H 0.008 0.992 30 H -0.003 1.003 31 H 0.108 0.892 32 H 0.122 0.878 33 H 0.434 0.566 34 H 0.122 0.878 35 H 0.171 0.829 36 H 0.447 0.553 37 H 0.167 0.833 38 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.064 -25.211 -5.176 32.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.197 4.197 3 Si 0.791 3.209 4 H -0.194 1.194 5 H -0.208 1.208 6 H -0.190 1.190 7 C -0.564 4.564 8 H 0.075 0.925 9 C 0.018 3.982 10 C -0.073 4.073 11 C -0.141 4.141 12 C -0.144 4.144 13 C 0.024 3.976 14 N -0.287 5.287 15 C 0.301 3.699 16 O -0.420 6.420 17 C -0.030 4.030 18 H 0.184 0.816 19 C -0.156 4.156 20 C -0.124 4.124 21 C 0.415 3.585 22 O -0.383 6.383 23 O -0.308 6.308 24 N 0.028 4.972 25 O -0.202 6.202 26 C -0.139 4.139 27 C -0.132 4.132 28 H 0.074 0.926 29 H 0.026 0.974 30 H 0.016 0.984 31 H 0.126 0.874 32 H 0.140 0.860 33 H 0.275 0.725 34 H 0.140 0.860 35 H 0.189 0.811 36 H 0.312 0.688 37 H 0.185 0.815 38 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 18.290 -25.286 -3.557 31.410 hybrid contribution -0.044 1.127 -0.799 1.382 sum 18.246 -24.159 -4.356 30.587 Atomic orbital electron populations 1.70089 1.07726 1.27922 1.51381 1.25966 0.95787 1.03232 0.94675 0.85415 0.78508 0.78287 0.78658 1.19373 1.20777 1.19040 1.21380 0.93155 0.91081 1.50774 0.92477 1.18107 0.92940 0.91294 0.95821 1.20430 0.97508 0.95515 0.93850 1.20905 0.98659 0.96793 0.97742 1.20994 0.99263 0.96143 0.97978 1.17500 0.95702 0.90726 0.93650 1.43023 1.34425 1.22556 1.28739 1.20533 0.85590 0.82447 0.81290 1.90823 1.36286 1.74348 1.40553 1.23897 1.00553 0.91527 0.87043 0.81589 1.22994 1.08635 0.84626 0.99391 1.25045 0.98743 0.96169 0.92448 1.18885 0.73252 0.82338 0.83990 1.91012 1.47715 1.85342 1.14253 1.84607 1.80100 1.21065 1.45022 1.78705 1.04720 0.98964 1.14839 1.91476 1.85194 1.11044 1.32515 1.21064 0.97911 0.97649 0.97268 1.21020 0.97983 0.96783 0.97454 0.92620 0.97399 0.98424 0.87421 0.86039 0.72521 0.86008 0.81134 0.68843 0.81543 0.85381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.42 13.29 21.45 0.28 -56.13 16 2 C 0.00 0.08 5.46 84.65 0.46 0.54 16 3 Si 0.97 44.15 29.54 68.60 2.03 46.17 16 4 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 5 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 6 H -0.27 -11.72 7.11 99.48 0.71 -11.02 16 7 C -0.53 -29.99 9.09 25.60 0.23 -29.75 16 8 H 0.06 3.18 7.74 -2.91 -0.02 3.16 16 9 C 0.06 2.99 5.10 29.10 0.15 3.14 16 10 C -0.07 -3.20 5.07 -19.84 -0.10 -3.30 16 11 C -0.12 -5.08 9.69 22.25 0.22 -4.86 16 12 C -0.12 -4.36 8.66 22.39 0.19 -4.17 16 13 C 0.12 3.24 6.28 38.15 0.24 3.48 16 14 N -0.64 -11.02 5.34 -303.51 -1.62 -12.64 16 15 C 0.52 10.86 6.88 87.66 0.60 11.46 16 16 O -0.54 -18.02 14.27 15.00 0.21 -17.80 16 17 C 0.03 0.41 4.23 30.44 0.13 0.54 16 18 H 0.17 0.86 8.14 -2.39 -0.02 0.84 16 19 C -0.12 -0.90 6.44 30.77 0.20 -0.70 16 20 C 0.07 0.86 7.30 45.74 0.33 1.19 16 21 C 0.58 6.01 8.34 70.26 0.59 6.59 16 22 O -0.50 -6.73 17.74 19.92 0.35 -6.38 16 23 O -0.49 -3.30 13.43 -56.66 -0.76 -4.06 16 24 N -0.23 -4.28 12.51 -42.32 -0.53 -4.81 16 25 O -0.18 -4.02 11.82 -20.28 -0.24 -4.26 16 26 C -0.12 -3.17 9.96 22.39 0.22 -2.94 16 27 C -0.11 -4.08 9.69 22.25 0.22 -3.87 16 28 H 0.26 15.05 8.31 -92.71 -0.77 14.28 16 29 H 0.01 0.44 8.08 -2.39 -0.02 0.42 16 30 H 0.00 -0.15 8.08 -2.39 -0.02 -0.17 16 31 H 0.11 4.60 8.06 -2.91 -0.02 4.58 16 32 H 0.12 4.33 6.42 -2.91 -0.02 4.32 16 33 H 0.43 2.93 8.82 -92.70 -0.82 2.12 16 34 H 0.12 1.01 7.90 -2.39 -0.02 0.99 16 35 H 0.17 -0.14 8.14 -2.39 -0.02 -0.16 16 36 H 0.45 -1.76 9.11 -74.06 -0.67 -2.44 16 37 H 0.17 2.78 8.06 -2.91 -0.02 2.75 16 38 H 0.13 4.41 8.06 -2.91 -0.02 4.38 16 Total: -1.00 -84.49 346.37 3.06 -81.43 By element: Atomic # 1 Polarization: 1.48 SS G_CDS: -0.35 Total: 1.13 kcal Atomic # 6 Polarization: -26.34 SS G_CDS: 3.68 Total: -22.66 kcal Atomic # 7 Polarization: -71.72 SS G_CDS: -1.87 Total: -73.59 kcal Atomic # 8 Polarization: -32.07 SS G_CDS: -0.43 Total: -32.50 kcal Atomic # 14 Polarization: 44.15 SS G_CDS: 2.03 Total: 46.17 kcal Total: -84.49 3.06 -81.43 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001574480635.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.264 kcal (2) G-P(sol) polarization free energy of solvation -84.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.757 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.435 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds