Wall clock time and date at job start Tue Mar 31 2020 11:30:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35805 * 119.99968 * 2 1 4 4 C 1.41271 * 120.00216 * 180.02562 * 3 2 1 5 5 O 1.21848 * 119.99925 * 354.35209 * 4 3 2 6 6 N 1.34773 * 120.00170 * 174.34795 * 4 3 2 7 7 C 1.36770 * 119.99945 * 4.99078 * 6 4 3 8 8 H 1.07994 * 119.99844 * 320.75937 * 7 6 4 9 9 C 1.39053 * 120.00212 * 140.76695 * 7 6 4 10 10 N 1.31372 * 119.99537 * 340.93773 * 9 7 6 11 11 Si 1.86795 * 120.00310 * 160.93899 * 9 7 6 12 12 H 1.48500 * 109.47196 * 359.97438 * 11 9 7 13 13 H 1.48505 * 109.47130 * 119.99728 * 11 9 7 14 14 H 1.48501 * 109.47084 * 239.99831 * 11 9 7 15 15 C 1.46504 * 120.00007 * 184.98930 * 6 4 3 16 16 C 1.50697 * 109.47364 * 89.99994 * 15 6 4 17 17 C 1.35349 * 126.91193 * 264.68540 * 16 15 6 18 18 N 1.33774 * 106.49576 * 179.90271 * 17 16 15 19 19 N 1.28633 * 108.88333 * 0.36902 * 18 17 16 20 20 N 1.28711 * 110.18031 * 359.76707 * 19 18 17 21 21 H 0.97005 * 125.86922 * 180.02562 * 20 19 18 22 22 C 1.41505 * 119.99854 * 180.02562 * 2 1 3 23 23 C 1.37112 * 125.47848 * 294.99612 * 22 2 1 24 24 C 1.37412 * 113.20909 * 179.97438 * 23 22 2 25 25 C 1.33883 * 115.13478 * 359.97438 * 24 23 22 26 26 S 1.70595 * 111.02248 * 0.02562 * 25 24 23 27 27 H 1.09007 * 109.46574 * 269.99344 * 1 2 3 28 28 H 1.08994 * 109.47513 * 29.99181 * 1 2 3 29 29 H 1.08993 * 109.47214 * 149.99916 * 1 2 3 30 30 H 1.08004 * 119.99668 * 0.02562 * 3 2 1 31 31 H 0.97006 * 119.99994 * 185.02451 * 10 9 7 32 32 H 1.09002 * 109.47267 * 210.00143 * 15 6 4 33 33 H 1.09003 * 109.46912 * 329.99890 * 15 6 4 34 34 H 1.08004 * 126.75370 * 0.03999 * 17 16 15 35 35 H 1.08000 * 123.39727 * 0.23138 * 23 22 2 36 36 H 1.08007 * 122.43201 * 180.02562 * 24 23 22 37 37 H 1.08001 * 124.48639 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1860 1.1761 0.0000 4 6 3.5988 1.1762 -0.0005 5 8 4.2081 0.1260 0.1028 6 7 4.2726 2.3377 -0.1155 7 6 3.5926 3.5243 -0.1289 8 1 2.6532 3.6024 -0.6559 9 6 4.1108 4.6302 0.5361 10 7 5.0229 4.4685 1.4675 11 14 3.5099 6.3455 0.1049 12 1 2.4886 6.2567 -0.9695 13 1 2.9100 6.9768 1.3078 14 1 4.6538 7.1666 -0.3668 15 6 5.7334 2.3293 -0.2261 16 6 6.1268 2.2488 -1.6786 17 6 6.4340 1.1307 -2.3768 18 7 6.7182 1.5269 -3.6225 19 7 6.6027 2.8063 -3.6890 20 7 6.2496 3.2803 -2.5456 21 1 6.0974 4.2162 -2.3408 22 6 2.2145 -1.2255 -0.0005 23 6 2.2038 -2.1510 1.0110 24 6 2.9816 -3.2523 0.7456 25 6 3.6075 -3.2347 -0.4378 26 16 3.2479 -1.8067 -1.2990 27 1 -0.3633 -0.0001 1.0278 28 1 -0.3634 0.8900 -0.5137 29 1 -0.3633 -0.8899 -0.5138 30 1 1.6460 2.1114 0.0004 31 1 5.3315 5.2310 1.9818 32 1 6.1361 3.2439 0.2092 33 1 6.1331 1.4666 0.3069 34 1 6.4452 0.1177 -2.0025 35 1 1.6377 -2.0288 1.9226 36 1 3.0801 -4.0730 1.4408 37 1 4.2550 -4.0200 -0.7989 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001575127652.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:30:06 Heat of formation + Delta-G solvation = 125.555728 kcal Electronic energy + Delta-G solvation = -24442.347057 eV Core-core repulsion = 20928.825364 eV Total energy + Delta-G solvation = -3513.521693 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.089 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.64888 -39.20447 -37.36123 -35.37864 -34.12602 -32.72417 -32.07091 -31.00312 -28.31729 -27.91324 -26.10996 -24.84531 -23.82855 -22.30787 -21.45948 -20.45264 -19.34932 -18.59013 -17.85719 -17.31828 -16.20092 -15.58678 -15.55583 -15.00886 -14.82197 -14.19156 -14.15552 -13.71404 -13.43956 -13.23087 -13.18806 -12.68471 -12.20260 -12.10290 -12.04202 -11.76255 -11.69511 -11.59081 -11.46115 -11.28678 -11.00848 -10.88349 -10.57810 -10.27060 -10.22736 -9.98472 -9.52599 -9.02298 -8.64498 -8.37814 -8.02565 -7.62777 -7.29765 -6.67071 -4.34917 1.18455 1.93161 2.16417 2.53853 2.77307 2.90378 3.02518 3.05044 3.12185 3.29274 3.39085 3.84008 4.27575 4.67836 4.78037 5.21058 5.32266 5.52252 5.56667 5.64183 5.71742 5.76897 5.80413 5.96838 6.01185 6.02945 6.16594 6.31267 6.50899 6.56488 6.73424 6.75568 6.83186 6.90199 7.02493 7.11426 7.20084 7.43455 7.65648 8.08622 8.78715 9.01409 9.23890 9.69507 10.34697 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.012311 B = 0.005841 C = 0.004451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2273.754447 B = 4792.723951 C = 6289.869111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.030 4.030 3 C -0.148 4.148 4 C 0.496 3.504 5 O -0.577 6.577 6 N -0.429 5.429 7 C -0.343 4.343 8 H 0.092 0.908 9 C 0.043 3.957 10 N -0.855 5.855 11 Si 0.909 3.091 12 H -0.265 1.265 13 H -0.277 1.277 14 H -0.277 1.277 15 C 0.174 3.826 16 C 0.009 3.991 17 C -0.050 4.050 18 N -0.278 5.278 19 N -0.106 5.106 20 N -0.382 5.382 21 H 0.445 0.555 22 C -0.125 4.125 23 C -0.142 4.142 24 C -0.139 4.139 25 C -0.281 4.281 26 S 0.236 5.764 27 H 0.072 0.928 28 H 0.069 0.931 29 H 0.064 0.936 30 H 0.133 0.867 31 H 0.274 0.726 32 H 0.118 0.882 33 H 0.092 0.908 34 H 0.185 0.815 35 H 0.129 0.871 36 H 0.123 0.877 37 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.875 -5.083 -1.203 7.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.035 4.035 3 C -0.172 4.172 4 C 0.289 3.711 5 O -0.464 6.464 6 N -0.147 5.147 7 C -0.471 4.471 8 H 0.109 0.891 9 C -0.164 4.164 10 N -0.491 5.491 11 Si 0.734 3.266 12 H -0.189 1.189 13 H -0.202 1.202 14 H -0.203 1.203 15 C 0.048 3.952 16 C -0.127 4.127 17 C -0.208 4.208 18 N -0.146 5.146 19 N -0.086 5.086 20 N -0.103 5.103 21 H 0.290 0.710 22 C -0.244 4.244 23 C -0.172 4.172 24 C -0.172 4.172 25 C -0.419 4.419 26 S 0.508 5.492 27 H 0.090 0.910 28 H 0.088 0.912 29 H 0.083 0.917 30 H 0.151 0.849 31 H 0.085 0.915 32 H 0.135 0.865 33 H 0.110 0.890 34 H 0.202 0.798 35 H 0.147 0.853 36 H 0.141 0.859 37 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -3.519 -4.753 -4.018 7.150 hybrid contribution -0.933 0.893 2.818 3.100 sum -4.452 -3.860 -1.200 6.013 Atomic orbital electron populations 1.20797 0.90764 1.02515 1.02352 1.19253 0.94880 0.90720 0.98638 1.22346 0.95576 0.97712 1.01589 1.17158 0.88452 0.84298 0.81156 1.90851 1.70846 1.30609 1.54077 1.43275 1.03935 1.05220 1.62294 1.19476 1.07252 0.86869 1.33481 0.89059 1.25473 0.96509 1.00319 0.94101 1.69800 1.29241 1.32174 1.17862 0.86139 0.79194 0.82017 0.79204 1.18947 1.20210 1.20259 1.19931 0.84080 1.06011 0.85168 1.23295 1.04258 0.87433 0.97699 1.23364 1.07023 1.00115 0.90328 1.74955 1.17650 1.02487 1.19468 1.78111 1.19273 1.05735 1.05499 1.45041 1.45799 1.11556 1.07857 0.70985 1.22122 1.03694 0.98560 1.00003 1.20411 1.03560 0.94028 0.99193 1.19648 1.00436 0.99759 0.97380 1.24950 1.09900 1.04703 1.02342 1.82751 1.41110 1.07991 1.17387 0.90976 0.91240 0.91702 0.84922 0.91488 0.86489 0.88985 0.79791 0.85301 0.85894 0.83261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.36 10.02 36.01 0.36 -0.99 16 2 C -0.03 -0.51 5.71 -104.25 -0.60 -1.10 16 3 C -0.15 -2.86 8.81 -39.30 -0.35 -3.20 16 4 C 0.50 10.88 7.29 -15.11 -0.11 10.77 16 5 O -0.58 -13.09 11.52 5.06 0.06 -13.03 16 6 N -0.43 -9.47 2.48 -119.45 -0.30 -9.76 16 7 C -0.34 -7.59 8.41 -15.05 -0.13 -7.72 16 8 H 0.09 1.98 6.72 -52.49 -0.35 1.63 16 9 C 0.04 0.94 5.00 -17.45 -0.09 0.86 16 10 N -0.86 -19.83 11.43 55.50 0.63 -19.20 16 11 Si 0.91 17.06 29.60 -169.99 -5.03 12.03 16 12 H -0.27 -4.95 7.11 56.52 0.40 -4.55 16 13 H -0.28 -5.33 7.11 56.52 0.40 -4.93 16 14 H -0.28 -5.16 7.11 56.52 0.40 -4.76 16 15 C 0.17 3.63 5.60 -5.19 -0.03 3.60 16 16 C 0.01 0.17 6.89 -82.09 -0.57 -0.39 16 17 C -0.05 -0.98 11.99 -17.74 -0.21 -1.19 16 18 N -0.28 -5.63 12.41 30.24 0.38 -5.26 16 19 N -0.11 -2.06 13.38 60.35 0.81 -1.26 16 20 N -0.38 -6.95 6.98 33.54 0.23 -6.72 16 21 H 0.45 7.09 8.96 -190.40 -1.71 5.39 16 22 C -0.13 -2.21 3.76 -38.75 -0.15 -2.36 16 23 C -0.14 -2.36 10.25 -40.29 -0.41 -2.78 16 24 C -0.14 -2.19 10.14 -41.41 -0.42 -2.61 16 25 C -0.28 -4.43 10.92 29.20 0.32 -4.11 16 26 S 0.24 4.04 20.51 -107.50 -2.20 1.84 16 27 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 28 H 0.07 0.80 8.08 -51.93 -0.42 0.38 16 29 H 0.06 0.75 8.09 -51.93 -0.42 0.33 16 30 H 0.13 2.44 6.39 -52.48 -0.34 2.11 16 31 H 0.27 6.04 8.32 -40.82 -0.34 5.71 16 32 H 0.12 2.54 5.55 -51.93 -0.29 2.25 16 33 H 0.09 1.97 7.36 -51.93 -0.38 1.59 16 34 H 0.18 3.35 8.06 -52.48 -0.42 2.93 16 35 H 0.13 1.93 8.06 -52.49 -0.42 1.51 16 36 H 0.12 1.63 8.06 -52.48 -0.42 1.21 16 37 H 0.15 1.99 8.06 -52.49 -0.42 1.57 16 LS Contribution 334.26 15.07 5.04 5.04 Total: -1.00 -26.89 334.26 -7.91 -34.80 By element: Atomic # 1 Polarization: 17.91 SS G_CDS: -5.15 Total: 12.75 kcal Atomic # 6 Polarization: -8.86 SS G_CDS: -2.37 Total: -11.23 kcal Atomic # 7 Polarization: -43.95 SS G_CDS: 1.75 Total: -42.19 kcal Atomic # 8 Polarization: -13.09 SS G_CDS: 0.06 Total: -13.03 kcal Atomic # 14 Polarization: 17.06 SS G_CDS: -5.03 Total: 12.03 kcal Atomic # 16 Polarization: 4.04 SS G_CDS: -2.20 Total: 1.84 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -26.89 -7.91 -34.80 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001575127652.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 160.357 kcal (2) G-P(sol) polarization free energy of solvation -26.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 133.468 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.913 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.801 kcal (6) G-S(sol) free energy of system = (1) + (5) 125.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds