Wall clock time and date at job start Tue Mar 31 2020 11:30:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35805 * 119.99968 * 2 1 4 4 C 1.41271 * 120.00216 * 180.02562 * 3 2 1 5 5 O 1.21848 * 119.99925 * 354.35209 * 4 3 2 6 6 N 1.34773 * 120.00170 * 174.34795 * 4 3 2 7 7 C 1.36770 * 119.99945 * 4.99078 * 6 4 3 8 8 H 1.07994 * 119.99844 * 320.75937 * 7 6 4 9 9 C 1.39053 * 120.00212 * 140.76695 * 7 6 4 10 10 N 1.31372 * 119.99537 * 340.93773 * 9 7 6 11 11 Si 1.86795 * 120.00310 * 160.93899 * 9 7 6 12 12 H 1.48500 * 109.47196 * 359.97438 * 11 9 7 13 13 H 1.48505 * 109.47130 * 119.99728 * 11 9 7 14 14 H 1.48501 * 109.47084 * 239.99831 * 11 9 7 15 15 C 1.46504 * 120.00007 * 184.98930 * 6 4 3 16 16 C 1.50697 * 109.47364 * 89.99994 * 15 6 4 17 17 C 1.35349 * 126.91193 * 264.68540 * 16 15 6 18 18 N 1.33774 * 106.49576 * 179.90271 * 17 16 15 19 19 N 1.28633 * 108.88333 * 0.36902 * 18 17 16 20 20 N 1.28711 * 110.18031 * 359.76707 * 19 18 17 21 21 H 0.97005 * 125.86922 * 180.02562 * 20 19 18 22 22 C 1.41505 * 119.99854 * 180.02562 * 2 1 3 23 23 C 1.37112 * 125.47848 * 294.99612 * 22 2 1 24 24 C 1.37412 * 113.20909 * 179.97438 * 23 22 2 25 25 C 1.33883 * 115.13478 * 359.97438 * 24 23 22 26 26 S 1.70595 * 111.02248 * 0.02562 * 25 24 23 27 27 H 1.09007 * 109.46574 * 269.99344 * 1 2 3 28 28 H 1.08994 * 109.47513 * 29.99181 * 1 2 3 29 29 H 1.08993 * 109.47214 * 149.99916 * 1 2 3 30 30 H 1.08004 * 119.99668 * 0.02562 * 3 2 1 31 31 H 0.97006 * 119.99994 * 185.02451 * 10 9 7 32 32 H 1.09002 * 109.47267 * 210.00143 * 15 6 4 33 33 H 1.09003 * 109.46912 * 329.99890 * 15 6 4 34 34 H 1.08004 * 126.75370 * 0.03999 * 17 16 15 35 35 H 1.08000 * 123.39727 * 0.23138 * 23 22 2 36 36 H 1.08007 * 122.43201 * 180.02562 * 24 23 22 37 37 H 1.08001 * 124.48639 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1860 1.1761 0.0000 4 6 3.5988 1.1762 -0.0005 5 8 4.2081 0.1260 0.1028 6 7 4.2726 2.3377 -0.1155 7 6 3.5926 3.5243 -0.1289 8 1 2.6532 3.6024 -0.6559 9 6 4.1108 4.6302 0.5361 10 7 5.0229 4.4685 1.4675 11 14 3.5099 6.3455 0.1049 12 1 2.4886 6.2567 -0.9695 13 1 2.9100 6.9768 1.3078 14 1 4.6538 7.1666 -0.3668 15 6 5.7334 2.3293 -0.2261 16 6 6.1268 2.2488 -1.6786 17 6 6.4340 1.1307 -2.3768 18 7 6.7182 1.5269 -3.6225 19 7 6.6027 2.8063 -3.6890 20 7 6.2496 3.2803 -2.5456 21 1 6.0974 4.2162 -2.3408 22 6 2.2145 -1.2255 -0.0005 23 6 2.2038 -2.1510 1.0110 24 6 2.9816 -3.2523 0.7456 25 6 3.6075 -3.2347 -0.4378 26 16 3.2479 -1.8067 -1.2990 27 1 -0.3633 -0.0001 1.0278 28 1 -0.3634 0.8900 -0.5137 29 1 -0.3633 -0.8899 -0.5138 30 1 1.6460 2.1114 0.0004 31 1 5.3315 5.2310 1.9818 32 1 6.1361 3.2439 0.2092 33 1 6.1331 1.4666 0.3069 34 1 6.4452 0.1177 -2.0025 35 1 1.6377 -2.0288 1.9226 36 1 3.0801 -4.0730 1.4408 37 1 4.2550 -4.0200 -0.7989 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001575127652.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:30:05 Heat of formation + Delta-G solvation = 111.331709 kcal Electronic energy + Delta-G solvation = -24442.963857 eV Core-core repulsion = 20928.825364 eV Total energy + Delta-G solvation = -3514.138493 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.089 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -44.20836 -40.77100 -38.69807 -36.93875 -35.51798 -34.28977 -33.72288 -32.59975 -29.69784 -29.13874 -27.69114 -26.40366 -25.16772 -23.86432 -22.98146 -21.89050 -20.86280 -19.94387 -19.35690 -18.81553 -17.81220 -17.17636 -16.98696 -16.48379 -16.31615 -15.74509 -15.62620 -15.23823 -14.83294 -14.59494 -14.53340 -14.04140 -13.57026 -13.39359 -13.38598 -13.25843 -13.13349 -12.92286 -12.79747 -12.76660 -12.58282 -12.40050 -12.06780 -11.83618 -11.55078 -11.53384 -11.15185 -10.56887 -10.17294 -9.85471 -9.55097 -9.07849 -8.67683 -8.33108 -6.06845 -0.17502 0.58056 0.63969 1.23525 1.39898 1.48622 1.49449 1.55323 1.59168 1.90497 2.02985 2.28088 2.66622 3.07237 3.20708 3.66101 4.02959 4.08650 4.18256 4.29013 4.36421 4.44666 4.60651 4.72079 4.77241 4.82718 4.86564 5.00428 5.10171 5.15060 5.21699 5.24770 5.44119 5.47107 5.61914 5.71135 5.84718 5.96410 6.02012 6.40871 7.10806 7.44752 7.59193 8.04595 8.69174 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.012311 B = 0.005841 C = 0.004451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2273.754447 B = 4792.723951 C = 6289.869111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.000 4.000 3 C -0.192 4.192 4 C 0.489 3.511 5 O -0.593 6.593 6 N -0.442 5.442 7 C -0.351 4.351 8 H 0.093 0.907 9 C 0.013 3.987 10 N -0.886 5.886 11 Si 0.969 3.031 12 H -0.261 1.261 13 H -0.283 1.283 14 H -0.273 1.273 15 C 0.185 3.815 16 C 0.007 3.993 17 C -0.049 4.049 18 N -0.292 5.292 19 N -0.106 5.106 20 N -0.370 5.370 21 H 0.455 0.545 22 C -0.154 4.154 23 C -0.143 4.143 24 C -0.147 4.147 25 C -0.277 4.277 26 S 0.206 5.794 27 H 0.091 0.909 28 H 0.082 0.918 29 H 0.079 0.921 30 H 0.136 0.864 31 H 0.275 0.725 32 H 0.108 0.892 33 H 0.079 0.921 34 H 0.193 0.807 35 H 0.145 0.855 36 H 0.150 0.850 37 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.072 -5.541 -1.242 8.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.005 4.005 3 C -0.216 4.216 4 C 0.283 3.717 5 O -0.481 6.481 6 N -0.161 5.161 7 C -0.478 4.478 8 H 0.110 0.890 9 C -0.191 4.191 10 N -0.523 5.523 11 Si 0.793 3.207 12 H -0.185 1.185 13 H -0.209 1.209 14 H -0.198 1.198 15 C 0.058 3.942 16 C -0.129 4.129 17 C -0.207 4.207 18 N -0.159 5.159 19 N -0.086 5.086 20 N -0.092 5.092 21 H 0.302 0.698 22 C -0.272 4.272 23 C -0.173 4.173 24 C -0.179 4.179 25 C -0.415 4.415 26 S 0.478 5.522 27 H 0.109 0.891 28 H 0.101 0.899 29 H 0.098 0.902 30 H 0.153 0.847 31 H 0.085 0.915 32 H 0.126 0.874 33 H 0.098 0.902 34 H 0.210 0.790 35 H 0.162 0.838 36 H 0.168 0.832 37 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -4.727 -5.204 -4.070 8.123 hybrid contribution -0.591 0.849 2.870 3.051 sum -5.318 -4.355 -1.199 6.977 Atomic orbital electron populations 1.20926 0.87602 1.03945 1.03905 1.19748 0.97009 0.89696 0.94036 1.22256 0.94412 0.98818 1.06084 1.17631 0.89586 0.84020 0.80445 1.90820 1.71459 1.30964 1.54853 1.43408 1.04178 1.05428 1.63061 1.19637 1.07533 0.87120 1.33552 0.88980 1.26076 0.96498 1.02928 0.93628 1.69888 1.30529 1.32990 1.18912 0.85233 0.78756 0.78169 0.78558 1.18533 1.20854 1.19785 1.19692 0.83897 1.04824 0.85745 1.23093 1.04722 0.87843 0.97288 1.23506 1.06578 1.00533 0.90113 1.74950 1.18382 1.02804 1.19787 1.78070 1.19217 1.05629 1.05716 1.45008 1.44976 1.11930 1.07279 0.69819 1.22374 1.04614 0.99361 1.00896 1.20740 1.03417 0.93847 0.99345 1.19983 0.99890 1.00251 0.97800 1.25266 1.09718 1.04386 1.02107 1.82834 1.41727 1.09435 1.18192 0.89071 0.89874 0.90219 0.84664 0.91464 0.87447 0.90230 0.79044 0.83761 0.83225 0.80967 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.44 10.02 71.24 0.71 -1.73 16 2 C 0.00 0.00 5.71 -19.62 -0.11 -0.12 16 3 C -0.19 -7.38 8.81 22.45 0.20 -7.18 16 4 C 0.49 21.68 7.29 84.99 0.62 22.30 16 5 O -0.59 -27.18 11.52 -4.82 -0.06 -27.23 16 6 N -0.44 -19.78 2.48 -649.99 -1.61 -21.39 16 7 C -0.35 -15.59 8.41 84.12 0.71 -14.88 16 8 H 0.09 4.00 6.72 -2.91 -0.02 3.98 16 9 C 0.01 0.57 5.00 84.96 0.42 0.99 16 10 N -0.89 -41.48 11.43 21.68 0.25 -41.23 16 11 Si 0.97 34.61 29.60 68.60 2.03 36.64 16 12 H -0.26 -9.09 7.11 99.48 0.71 -8.39 16 13 H -0.28 -10.34 7.11 99.48 0.71 -9.63 16 14 H -0.27 -9.48 7.11 99.48 0.71 -8.77 16 15 C 0.18 7.85 5.60 85.63 0.48 8.33 16 16 C 0.01 0.26 6.89 41.35 0.28 0.54 16 17 C -0.05 -1.91 11.99 83.73 1.00 -0.91 16 18 N -0.29 -11.69 12.41 -58.25 -0.72 -12.41 16 19 N -0.11 -4.06 13.38 37.02 0.50 -3.56 16 20 N -0.37 -13.30 6.98 -47.79 -0.33 -13.63 16 21 H 0.45 14.21 8.96 -219.96 -1.97 12.24 16 22 C -0.15 -5.27 3.76 22.81 0.09 -5.18 16 23 C -0.14 -4.49 10.25 21.81 0.22 -4.26 16 24 C -0.15 -4.27 10.14 21.08 0.21 -4.05 16 25 C -0.28 -8.22 10.92 66.83 0.73 -7.49 16 26 S 0.21 6.94 20.51 -56.49 -1.16 5.79 16 27 H 0.09 1.82 8.14 -2.38 -0.02 1.80 16 28 H 0.08 1.71 8.08 -2.39 -0.02 1.69 16 29 H 0.08 1.62 8.09 -2.39 -0.02 1.60 16 30 H 0.14 4.99 6.39 -2.91 -0.02 4.97 16 31 H 0.28 12.21 8.32 -92.70 -0.77 11.44 16 32 H 0.11 4.78 5.55 -2.39 -0.01 4.76 16 33 H 0.08 3.52 7.36 -2.39 -0.02 3.50 16 34 H 0.19 7.02 8.06 -2.91 -0.02 6.99 16 35 H 0.14 3.96 8.06 -2.91 -0.02 3.94 16 36 H 0.15 3.48 8.06 -2.91 -0.02 3.46 16 37 H 0.17 4.18 8.06 -2.91 -0.02 4.15 16 Total: -1.00 -56.54 334.26 3.62 -52.92 By element: Atomic # 1 Polarization: 38.59 SS G_CDS: -0.84 Total: 37.75 kcal Atomic # 6 Polarization: -19.21 SS G_CDS: 5.57 Total: -13.64 kcal Atomic # 7 Polarization: -90.29 SS G_CDS: -1.93 Total: -92.22 kcal Atomic # 8 Polarization: -27.18 SS G_CDS: -0.06 Total: -27.23 kcal Atomic # 14 Polarization: 34.61 SS G_CDS: 2.03 Total: 36.64 kcal Atomic # 16 Polarization: 6.94 SS G_CDS: -1.16 Total: 5.79 kcal Total: -56.54 3.62 -52.92 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001575127652.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 164.252 kcal (2) G-P(sol) polarization free energy of solvation -56.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 107.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.921 kcal (6) G-S(sol) free energy of system = (1) + (5) 111.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds