Wall clock time and date at job start Tue Mar 31 2020 12:01:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 109.47241 * 2 1 4 4 C 1.50698 * 109.47159 * 239.99535 * 2 1 3 5 5 H 1.08002 * 120.00192 * 240.00645 * 4 2 1 6 6 C 1.37881 * 119.99665 * 59.99884 * 4 2 1 7 7 N 1.31516 * 120.00192 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 119.99754 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47341 * 0.02562 * 8 6 4 10 10 H 1.48500 * 109.46688 * 120.00550 * 8 6 4 11 11 H 1.48496 * 109.47483 * 240.00202 * 8 6 4 12 12 C 1.50701 * 109.47082 * 119.99703 * 2 1 3 13 13 O 1.20835 * 119.99958 * 119.99449 * 12 2 1 14 14 O 1.34223 * 120.00064 * 300.00256 * 12 2 1 15 15 C 1.45207 * 117.00152 * 179.97438 * 14 12 2 16 16 C 1.50697 * 109.47123 * 179.97438 * 15 14 12 17 17 C 1.38838 * 119.77954 * 270.02067 * 16 15 14 18 18 C 1.37796 * 120.74702 * 179.97438 * 17 16 15 19 19 C 1.39027 * 119.85493 * 359.97438 * 18 17 16 20 20 O 1.34714 * 133.22811 * 179.69060 * 19 18 17 21 21 C 1.34956 * 110.86625 * 179.91580 * 20 19 18 22 22 C 1.46803 * 125.14735 * 180.16055 * 21 20 19 23 23 O 1.21573 * 120.00470 * 180.25737 * 22 21 20 24 24 O 1.34861 * 119.99560 * 0.25184 * 22 21 20 25 25 C 1.35900 * 109.71245 * 0.37963 * 21 20 19 26 26 C 1.40745 * 119.16107 * 0.02562 * 19 18 17 27 27 C 1.36621 * 119.77588 * 90.00473 * 16 15 14 28 28 H 1.09001 * 109.46918 * 60.00075 * 1 2 3 29 29 H 1.08997 * 109.47241 * 179.97438 * 1 2 3 30 30 H 1.09008 * 109.46746 * 300.00229 * 1 2 3 31 31 H 0.96994 * 120.00250 * 179.97438 * 7 6 4 32 32 H 1.08998 * 109.47249 * 59.99454 * 15 14 12 33 33 H 1.09001 * 109.46929 * 299.99832 * 15 14 12 34 34 H 1.08003 * 119.62766 * 359.97438 * 17 16 15 35 35 H 1.08002 * 120.06845 * 179.97438 * 18 17 16 36 36 H 0.96698 * 117.00175 * 180.02562 * 24 22 21 37 37 H 1.08008 * 126.96023 * 179.81061 * 25 21 20 38 38 H 1.08004 * 120.14143 * 359.97438 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6532 -1.5887 -1.1312 6 6 1.6992 -0.2395 -2.4827 7 7 0.9435 0.8301 -2.6034 8 14 2.3225 -1.1197 -4.0078 9 1 3.1474 -2.2865 -3.6036 10 1 1.1677 -1.5867 -4.8163 11 1 3.1472 -0.1861 -4.8160 12 6 2.0323 -0.7103 1.2305 13 8 2.7270 -1.6929 1.1197 14 8 1.7080 -0.2518 2.4496 15 6 2.2267 -0.9863 3.5897 16 6 1.7628 -0.3289 4.8640 17 6 2.5347 0.6671 5.4467 18 6 2.1293 1.2819 6.6114 19 6 0.9344 0.9044 7.2135 20 8 0.2952 1.3081 8.3285 21 6 -0.8589 0.6284 8.4938 22 6 -1.8015 0.8205 9.6027 23 8 -2.8147 0.1513 9.6623 24 8 -1.5433 1.7393 10.5555 25 6 -1.0142 -0.2643 7.4809 26 6 0.1558 -0.1059 6.6185 27 6 0.5853 -0.7170 5.4378 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 0.7094 1.1616 -3.4844 32 1 3.3162 -0.9860 3.5570 33 1 1.8625 -2.0131 3.5567 34 1 3.4635 0.9635 4.9819 35 1 2.7386 2.0552 7.0555 36 1 -2.1930 1.8295 11.2660 37 1 -1.8357 -0.9515 7.3412 38 1 -0.0117 -1.4919 4.9800 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001592221926.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:01:49 Heat of formation + Delta-G solvation = -148.361693 kcal Electronic energy + Delta-G solvation = -24853.230792 eV Core-core repulsion = 20820.492775 eV Total energy + Delta-G solvation = -4032.738017 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.103 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.90652 -40.45822 -39.73430 -38.38489 -36.71205 -35.72218 -33.91206 -33.27874 -31.86499 -30.54983 -30.23489 -26.88798 -25.30271 -25.22118 -23.13677 -22.42292 -21.79248 -21.32870 -19.84179 -18.97768 -18.05146 -17.72813 -16.97628 -16.80148 -16.28442 -15.97880 -15.83196 -15.66271 -15.13295 -14.85263 -14.36556 -14.12546 -14.01654 -13.57738 -13.40754 -12.95043 -12.83901 -12.47912 -12.38413 -12.16422 -11.72613 -11.53180 -11.51594 -11.27187 -11.08149 -10.78988 -10.72624 -10.65948 -10.37232 -10.12928 -10.08186 -9.30487 -9.05828 -8.85897 -8.65481 -8.47239 -6.12889 -4.18465 0.03242 0.91068 1.32175 1.83306 2.40031 2.65835 3.11947 3.25016 3.27919 3.35081 3.42499 3.78194 4.15601 4.23176 4.39070 4.49565 4.63483 4.73144 4.90604 5.04749 5.08372 5.20521 5.35020 5.44530 5.50981 5.74187 5.78775 5.83734 5.89273 6.09568 6.18353 6.27688 6.64060 6.65079 6.84199 6.85522 7.15504 7.27313 7.40878 7.71931 7.92104 8.11420 8.79878 8.91191 9.47330 10.94492 Molecular weight = 318.10amu Principal moments of inertia in cm(-1) A = 0.028825 B = 0.002230 C = 0.002161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 971.138713 B =12553.665124 C =12951.843234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.058 3.942 3 H 0.065 0.935 4 C -0.512 4.512 5 H 0.076 0.924 6 C 0.061 3.939 7 N -0.892 5.892 8 Si 0.904 3.096 9 H -0.271 1.271 10 H -0.283 1.283 11 H -0.283 1.283 12 C 0.465 3.535 13 O -0.516 6.516 14 O -0.361 6.361 15 C 0.103 3.897 16 C -0.101 4.101 17 C -0.049 4.049 18 C -0.116 4.116 19 C 0.084 3.916 20 O -0.173 6.173 21 C -0.027 4.027 22 C 0.572 3.428 23 O -0.490 6.490 24 O -0.501 6.501 25 C -0.080 4.080 26 C -0.155 4.155 27 C -0.028 4.028 28 H 0.096 0.904 29 H 0.031 0.969 30 H 0.023 0.977 31 H 0.263 0.737 32 H 0.077 0.923 33 H 0.075 0.925 34 H 0.144 0.856 35 H 0.140 0.860 36 H 0.421 0.579 37 H 0.176 0.824 38 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.445 1.879 23.800 23.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.039 3.961 3 H 0.082 0.918 4 C -0.550 4.550 5 H 0.094 0.906 6 C -0.140 4.140 7 N -0.530 5.530 8 Si 0.732 3.268 9 H -0.195 1.195 10 H -0.209 1.209 11 H -0.209 1.209 12 C 0.310 3.690 13 O -0.403 6.403 14 O -0.279 6.279 15 C 0.029 3.971 16 C -0.102 4.102 17 C -0.067 4.067 18 C -0.134 4.134 19 C 0.036 3.964 20 O -0.075 6.075 21 C -0.075 4.075 22 C 0.415 3.585 23 O -0.379 6.379 24 O -0.313 6.313 25 C -0.100 4.100 26 C -0.156 4.156 27 C -0.046 4.046 28 H 0.114 0.886 29 H 0.050 0.950 30 H 0.042 0.958 31 H 0.073 0.927 32 H 0.095 0.905 33 H 0.094 0.906 34 H 0.162 0.838 35 H 0.158 0.842 36 H 0.280 0.720 37 H 0.193 0.807 38 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -2.201 1.666 23.550 23.712 hybrid contribution -0.155 -0.487 -0.312 0.599 sum -2.355 1.179 23.238 23.387 Atomic orbital electron populations 1.21736 0.95589 1.00045 1.01776 1.18781 0.94879 0.97003 0.85474 0.91780 1.21173 1.31869 1.13234 0.88733 0.90562 1.24946 0.94908 0.95026 0.99169 1.69886 1.36549 1.22799 1.23792 0.86327 0.78660 0.79709 0.82152 1.19504 1.20894 1.20895 1.25407 0.76528 0.83236 0.83816 1.90508 1.36390 1.26730 1.86700 1.86710 1.70445 1.55720 1.15071 1.21577 0.99073 0.94848 0.81617 1.19289 0.95702 0.98752 0.96429 1.21051 0.99611 0.93047 0.92954 1.19963 0.93619 1.03216 0.96624 1.19813 0.95067 0.95454 0.86115 1.84087 1.29616 1.54761 1.39007 1.20363 0.88899 0.99809 0.98406 1.18933 0.82642 0.77042 0.79858 1.91024 1.25622 1.45937 1.75311 1.84668 1.54196 1.55779 1.36666 1.22840 0.98025 0.97743 0.91357 1.19777 0.96167 1.00908 0.98737 1.20320 0.94454 0.97985 0.91870 0.88562 0.94985 0.95756 0.92723 0.90515 0.90640 0.83793 0.84168 0.71985 0.80673 0.84457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.11 8.90 37.16 0.33 -2.78 16 2 C 0.06 1.43 2.74 -92.92 -0.25 1.18 16 3 H 0.06 1.65 8.14 -51.93 -0.42 1.22 16 4 C -0.51 -14.13 8.37 -34.44 -0.29 -14.41 16 5 H 0.08 2.19 6.76 -52.49 -0.35 1.84 16 6 C 0.06 1.65 5.30 -17.82 -0.09 1.56 16 7 N -0.89 -24.54 11.32 55.43 0.63 -23.92 16 8 Si 0.90 21.20 29.54 -169.99 -5.02 16.18 16 9 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 10 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 11 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 12 C 0.47 10.54 7.25 36.01 0.26 10.80 16 13 O -0.52 -12.67 15.21 -18.76 -0.29 -12.96 16 14 O -0.36 -6.81 10.11 -39.24 -0.40 -7.21 16 15 C 0.10 1.50 5.57 36.00 0.20 1.70 16 16 C -0.10 -1.24 5.49 -104.99 -0.58 -1.81 16 17 C -0.05 -0.51 9.66 -39.52 -0.38 -0.89 16 18 C -0.12 -1.15 10.07 -39.45 -0.40 -1.55 16 19 C 0.08 0.96 7.41 -38.34 -0.28 0.68 16 20 O -0.17 -2.00 10.60 1.96 0.02 -1.98 16 21 C -0.03 -0.29 7.10 -36.96 -0.26 -0.55 16 22 C 0.57 5.38 8.31 34.19 0.28 5.66 16 23 O -0.49 -5.49 17.61 -19.32 -0.34 -5.83 16 24 O -0.50 -3.38 13.44 -42.77 -0.57 -3.95 16 25 C -0.08 -0.82 10.81 -37.22 -0.40 -1.22 16 26 C -0.16 -1.77 6.38 -105.20 -0.67 -2.44 16 27 C -0.03 -0.32 9.68 -39.62 -0.38 -0.71 16 28 H 0.10 2.43 6.07 -51.93 -0.32 2.11 16 29 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.02 0.49 8.11 -51.92 -0.42 0.07 16 31 H 0.26 6.86 8.31 -40.82 -0.34 6.52 16 32 H 0.08 1.05 8.07 -51.93 -0.42 0.63 16 33 H 0.08 1.06 8.07 -51.93 -0.42 0.64 16 34 H 0.14 1.24 8.06 -52.48 -0.42 0.81 16 35 H 0.14 1.04 8.06 -52.49 -0.42 0.62 16 36 H 0.42 0.60 9.11 45.56 0.42 1.01 16 37 H 0.18 1.42 8.06 -52.48 -0.42 1.00 16 38 H 0.14 1.39 8.06 -52.48 -0.42 0.97 16 LS Contribution 345.22 15.07 5.20 5.20 Total: -1.00 -32.88 345.22 -6.87 -39.76 By element: Atomic # 1 Polarization: 2.68 SS G_CDS: -3.19 Total: -0.50 kcal Atomic # 6 Polarization: -1.87 SS G_CDS: -2.92 Total: -4.79 kcal Atomic # 7 Polarization: -24.54 SS G_CDS: 0.63 Total: -23.92 kcal Atomic # 8 Polarization: -30.35 SS G_CDS: -1.58 Total: -31.93 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -32.88 -6.87 -39.76 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592221926.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -108.605 kcal (2) G-P(sol) polarization free energy of solvation -32.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.757 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds