Wall clock time and date at job start Tue Mar 31 2020 12:01:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 109.47241 * 2 1 4 4 C 1.50698 * 109.47159 * 239.99535 * 2 1 3 5 5 H 1.08002 * 120.00192 * 240.00645 * 4 2 1 6 6 C 1.37881 * 119.99665 * 59.99884 * 4 2 1 7 7 N 1.31516 * 120.00192 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 119.99754 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47341 * 0.02562 * 8 6 4 10 10 H 1.48500 * 109.46688 * 120.00550 * 8 6 4 11 11 H 1.48496 * 109.47483 * 240.00202 * 8 6 4 12 12 C 1.50701 * 109.47082 * 119.99703 * 2 1 3 13 13 O 1.20835 * 119.99958 * 119.99449 * 12 2 1 14 14 O 1.34223 * 120.00064 * 300.00256 * 12 2 1 15 15 C 1.45207 * 117.00152 * 179.97438 * 14 12 2 16 16 C 1.50697 * 109.47123 * 179.97438 * 15 14 12 17 17 C 1.38838 * 119.77954 * 270.02067 * 16 15 14 18 18 C 1.37796 * 120.74702 * 179.97438 * 17 16 15 19 19 C 1.39027 * 119.85493 * 359.97438 * 18 17 16 20 20 O 1.34714 * 133.22811 * 179.69060 * 19 18 17 21 21 C 1.34956 * 110.86625 * 179.91580 * 20 19 18 22 22 C 1.46803 * 125.14735 * 180.16055 * 21 20 19 23 23 O 1.21573 * 120.00470 * 180.25737 * 22 21 20 24 24 O 1.34861 * 119.99560 * 0.25184 * 22 21 20 25 25 C 1.35900 * 109.71245 * 0.37963 * 21 20 19 26 26 C 1.40745 * 119.16107 * 0.02562 * 19 18 17 27 27 C 1.36621 * 119.77588 * 90.00473 * 16 15 14 28 28 H 1.09001 * 109.46918 * 60.00075 * 1 2 3 29 29 H 1.08997 * 109.47241 * 179.97438 * 1 2 3 30 30 H 1.09008 * 109.46746 * 300.00229 * 1 2 3 31 31 H 0.96994 * 120.00250 * 179.97438 * 7 6 4 32 32 H 1.08998 * 109.47249 * 59.99454 * 15 14 12 33 33 H 1.09001 * 109.46929 * 299.99832 * 15 14 12 34 34 H 1.08003 * 119.62766 * 359.97438 * 17 16 15 35 35 H 1.08002 * 120.06845 * 179.97438 * 18 17 16 36 36 H 0.96698 * 117.00175 * 180.02562 * 24 22 21 37 37 H 1.08008 * 126.96023 * 179.81061 * 25 21 20 38 38 H 1.08004 * 120.14143 * 359.97438 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6532 -1.5887 -1.1312 6 6 1.6992 -0.2395 -2.4827 7 7 0.9435 0.8301 -2.6034 8 14 2.3225 -1.1197 -4.0078 9 1 3.1474 -2.2865 -3.6036 10 1 1.1677 -1.5867 -4.8163 11 1 3.1472 -0.1861 -4.8160 12 6 2.0323 -0.7103 1.2305 13 8 2.7270 -1.6929 1.1197 14 8 1.7080 -0.2518 2.4496 15 6 2.2267 -0.9863 3.5897 16 6 1.7628 -0.3289 4.8640 17 6 2.5347 0.6671 5.4467 18 6 2.1293 1.2819 6.6114 19 6 0.9344 0.9044 7.2135 20 8 0.2952 1.3081 8.3285 21 6 -0.8589 0.6284 8.4938 22 6 -1.8015 0.8205 9.6027 23 8 -2.8147 0.1513 9.6623 24 8 -1.5433 1.7393 10.5555 25 6 -1.0142 -0.2643 7.4809 26 6 0.1558 -0.1059 6.6185 27 6 0.5853 -0.7170 5.4378 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 0.7094 1.1616 -3.4844 32 1 3.3162 -0.9860 3.5570 33 1 1.8625 -2.0131 3.5567 34 1 3.4635 0.9635 4.9819 35 1 2.7386 2.0552 7.0555 36 1 -2.1930 1.8295 11.2660 37 1 -1.8357 -0.9515 7.3412 38 1 -0.0117 -1.4919 4.9800 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001592221926.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:01:48 Heat of formation + Delta-G solvation = -167.377012 kcal Electronic energy + Delta-G solvation = -24854.055358 eV Core-core repulsion = 20820.492775 eV Total energy + Delta-G solvation = -4033.562583 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.103 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -43.72540 -41.38124 -41.13317 -39.37710 -37.37334 -37.29859 -35.90168 -34.09258 -33.04114 -32.35516 -31.04079 -27.97694 -27.25737 -26.13613 -24.83084 -23.23453 -22.79221 -22.10400 -21.58938 -19.70704 -18.80561 -18.62493 -18.50727 -18.01914 -17.76159 -17.62204 -17.22430 -16.55189 -16.40142 -15.97756 -15.69909 -15.21947 -14.82893 -14.73376 -14.39452 -14.32996 -14.13642 -13.90929 -13.50697 -13.38155 -12.99039 -12.83252 -12.79120 -12.68529 -12.58028 -12.27914 -12.26470 -12.13677 -12.05046 -11.59896 -11.46344 -11.08147 -11.05725 -10.52637 -9.82030 -9.48192 -8.18839 -6.31795 -0.75416 -0.00453 0.53877 1.09223 1.41899 1.44316 1.47102 1.56892 1.64662 1.88790 1.99488 2.43344 2.66804 3.11448 3.33886 3.44827 3.55188 3.78149 3.98299 4.04385 4.14571 4.24751 4.30747 4.47345 4.51565 4.68989 4.71116 4.92205 4.92484 4.98771 5.01603 5.06739 5.20907 5.37971 5.39931 5.41142 5.49334 5.70888 5.84438 5.90370 6.12179 6.74419 6.75432 7.07245 7.37217 8.87689 Molecular weight = 318.10amu Principal moments of inertia in cm(-1) A = 0.028825 B = 0.002230 C = 0.002161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 971.138713 B =12553.665124 C =12951.843234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.049 3.951 3 H 0.051 0.949 4 C -0.536 4.536 5 H 0.057 0.943 6 C 0.021 3.979 7 N -0.910 5.910 8 Si 0.963 3.037 9 H -0.275 1.275 10 H -0.274 1.274 11 H -0.274 1.274 12 C 0.475 3.525 13 O -0.541 6.541 14 O -0.358 6.358 15 C 0.101 3.899 16 C -0.115 4.115 17 C -0.050 4.050 18 C -0.110 4.110 19 C 0.072 3.928 20 O -0.180 6.180 21 C -0.038 4.038 22 C 0.581 3.419 23 O -0.512 6.512 24 O -0.496 6.496 25 C -0.079 4.079 26 C -0.168 4.168 27 C -0.032 4.032 28 H 0.076 0.924 29 H 0.029 0.971 30 H 0.047 0.953 31 H 0.268 0.732 32 H 0.086 0.914 33 H 0.079 0.921 34 H 0.163 0.837 35 H 0.167 0.833 36 H 0.443 0.557 37 H 0.193 0.807 38 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.427 2.216 24.816 25.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.030 3.970 3 H 0.069 0.931 4 C -0.573 4.573 5 H 0.076 0.924 6 C -0.179 4.179 7 N -0.548 5.548 8 Si 0.788 3.212 9 H -0.200 1.200 10 H -0.200 1.200 11 H -0.200 1.200 12 C 0.321 3.679 13 O -0.430 6.430 14 O -0.276 6.276 15 C 0.027 3.973 16 C -0.115 4.115 17 C -0.067 4.067 18 C -0.128 4.128 19 C 0.024 3.976 20 O -0.082 6.082 21 C -0.086 4.086 22 C 0.425 3.575 23 O -0.403 6.403 24 O -0.311 6.311 25 C -0.098 4.098 26 C -0.169 4.169 27 C -0.050 4.050 28 H 0.095 0.905 29 H 0.049 0.951 30 H 0.066 0.934 31 H 0.077 0.923 32 H 0.104 0.896 33 H 0.097 0.903 34 H 0.181 0.819 35 H 0.185 0.815 36 H 0.307 0.693 37 H 0.210 0.790 38 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -2.200 2.035 24.613 24.795 hybrid contribution -0.174 -0.529 -0.460 0.722 sum -2.374 1.505 24.153 24.316 Atomic orbital electron populations 1.21560 0.94498 0.99910 1.01900 1.18687 0.95820 0.96232 0.86288 0.93090 1.21292 1.32420 1.13198 0.90432 0.92428 1.25645 0.94953 0.95671 1.01613 1.69967 1.36787 1.23438 1.24644 0.85423 0.78321 0.78543 0.78887 1.20004 1.19969 1.19972 1.24763 0.75991 0.82512 0.84643 1.90489 1.37460 1.27704 1.87381 1.86640 1.70131 1.55901 1.14909 1.21864 0.99685 0.94962 0.80747 1.19179 0.96651 0.99987 0.95679 1.21272 1.00060 0.92349 0.93066 1.20254 0.93228 1.03274 0.96084 1.20154 0.95632 0.95618 0.86230 1.84073 1.29970 1.55045 1.39083 1.20663 0.88913 0.99920 0.99070 1.18729 0.81904 0.76992 0.79878 1.91018 1.26399 1.46947 1.75897 1.84625 1.55079 1.54538 1.36874 1.23087 0.98066 0.97807 0.90879 1.19930 0.96814 1.01192 0.98926 1.20441 0.94372 0.98168 0.91986 0.90536 0.95145 0.93385 0.92318 0.89616 0.90258 0.81939 0.81523 0.69314 0.79018 0.83570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.62 8.90 71.98 0.64 -4.98 16 2 C 0.05 2.45 2.74 -12.29 -0.03 2.42 16 3 H 0.05 2.67 8.14 -2.39 -0.02 2.65 16 4 C -0.54 -29.94 8.37 25.60 0.21 -29.72 16 5 H 0.06 3.38 6.76 -2.91 -0.02 3.36 16 6 C 0.02 1.14 5.30 84.66 0.45 1.59 16 7 N -0.91 -50.07 11.32 21.45 0.24 -49.83 16 8 Si 0.96 43.38 29.54 68.60 2.03 45.40 16 9 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 10 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 11 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 12 C 0.48 21.55 7.25 71.24 0.52 22.06 16 13 O -0.54 -26.72 15.21 21.94 0.33 -26.38 16 14 O -0.36 -13.25 10.11 -51.35 -0.52 -13.77 16 15 C 0.10 2.83 5.57 71.23 0.40 3.22 16 16 C -0.11 -2.64 5.49 -20.10 -0.11 -2.75 16 17 C -0.05 -0.94 9.66 22.31 0.22 -0.73 16 18 C -0.11 -1.95 10.07 22.35 0.23 -1.73 16 19 C 0.07 1.54 7.41 23.07 0.17 1.71 16 20 O -0.18 -3.91 10.60 -12.32 -0.13 -4.04 16 21 C -0.04 -0.77 7.10 23.97 0.17 -0.60 16 22 C 0.58 10.15 8.31 70.06 0.58 10.73 16 23 O -0.51 -10.88 17.61 19.60 0.35 -10.53 16 24 O -0.50 -5.75 13.44 -55.99 -0.75 -6.50 16 25 C -0.08 -1.52 10.81 23.80 0.26 -1.26 16 26 C -0.17 -3.63 6.38 -20.24 -0.13 -3.76 16 27 C -0.03 -0.69 9.68 22.25 0.22 -0.48 16 28 H 0.08 3.87 6.07 -2.39 -0.01 3.86 16 29 H 0.03 1.37 8.14 -2.39 -0.02 1.35 16 30 H 0.05 1.94 8.11 -2.38 -0.02 1.92 16 31 H 0.27 13.85 8.31 -92.71 -0.77 13.08 16 32 H 0.09 2.26 8.07 -2.39 -0.02 2.24 16 33 H 0.08 2.17 8.07 -2.39 -0.02 2.15 16 34 H 0.16 2.41 8.06 -2.91 -0.02 2.39 16 35 H 0.17 1.99 8.06 -2.91 -0.02 1.96 16 36 H 0.44 0.30 9.11 -74.06 -0.67 -0.38 16 37 H 0.19 2.87 8.06 -2.91 -0.02 2.84 16 38 H 0.15 2.82 8.06 -2.91 -0.02 2.79 16 Total: -1.00 -69.69 345.22 5.78 -63.92 By element: Atomic # 1 Polarization: 5.56 SS G_CDS: 0.45 Total: 6.01 kcal Atomic # 6 Polarization: -8.05 SS G_CDS: 3.78 Total: -4.27 kcal Atomic # 7 Polarization: -50.07 SS G_CDS: 0.24 Total: -49.83 kcal Atomic # 8 Polarization: -60.50 SS G_CDS: -0.72 Total: -61.23 kcal Atomic # 14 Polarization: 43.38 SS G_CDS: 2.03 Total: 45.40 kcal Total: -69.69 5.78 -63.92 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592221926.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.461 kcal (2) G-P(sol) polarization free energy of solvation -69.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -173.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.916 kcal (6) G-S(sol) free energy of system = (1) + (5) -167.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds