Wall clock time and date at job start Tue Mar 31 2020 12:51:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99773 * 2 1 4 4 H 1.48496 * 109.47488 * 270.00005 * 3 2 1 5 5 H 1.48497 * 109.47417 * 30.00515 * 3 2 1 6 6 H 1.48507 * 109.46875 * 150.00186 * 3 2 1 7 7 C 1.37869 * 120.00098 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00443 * 179.97438 * 7 2 1 9 9 C 1.50701 * 120.00221 * 0.02562 * 7 2 1 10 10 C 1.52995 * 109.47398 * 179.97438 * 9 7 2 11 11 C 1.50700 * 109.47018 * 179.97438 * 10 9 7 12 12 O 1.20829 * 120.00377 * 0.02562 * 11 10 9 13 13 O 1.34235 * 120.00106 * 179.97438 * 11 10 9 14 14 C 1.45201 * 117.00160 * 180.02562 * 13 11 10 15 15 C 1.50701 * 109.46886 * 180.02562 * 14 13 11 16 16 C 1.34943 * 125.69931 * 359.97438 * 15 14 13 17 17 N 1.37012 * 107.14813 * 179.97438 * 16 15 14 18 18 C 1.36140 * 132.63742 * 179.97438 * 17 16 15 19 19 C 1.35136 * 121.73387 * 180.02562 * 18 17 16 20 20 C 1.39704 * 121.15177 * 359.97438 * 19 18 17 21 21 C 1.39034 * 119.28355 * 0.22736 * 20 19 18 22 22 C 1.47068 * 120.86643 * 179.75471 * 21 20 19 23 23 O 1.21558 * 119.99878 * 179.81738 * 22 21 20 24 24 O 1.34815 * 119.99853 * 359.82191 * 22 21 20 25 25 C 1.37152 * 106.84498 * 359.97438 * 17 16 15 26 26 N 1.31964 * 108.22787 * 359.97438 * 25 17 16 27 27 H 0.97000 * 120.00066 * 0.02562 * 1 2 3 28 28 H 1.08995 * 109.47318 * 59.99340 * 9 7 2 29 29 H 1.09004 * 109.46720 * 300.00023 * 9 7 2 30 30 H 1.09004 * 109.47258 * 59.99687 * 10 9 7 31 31 H 1.09001 * 109.47423 * 299.99268 * 10 9 7 32 32 H 1.08998 * 109.46773 * 59.99994 * 14 13 11 33 33 H 1.09005 * 109.46749 * 300.00134 * 14 13 11 34 34 H 1.08001 * 126.42576 * 0.02562 * 16 15 14 35 35 H 1.08003 * 119.13389 * 0.02562 * 18 17 16 36 36 H 1.07998 * 119.42500 * 179.97438 * 19 18 17 37 37 H 1.07997 * 120.35802 * 180.02562 * 20 19 18 38 38 H 0.96696 * 116.99863 * 179.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0017 10 6 2.2453 -3.6620 -0.0027 11 6 1.4918 -4.9671 -0.0033 12 8 0.2835 -4.9672 -0.0033 13 8 2.1629 -6.1296 -0.0047 14 6 1.3721 -7.3474 -0.0057 15 6 2.2902 -8.5425 -0.0067 16 6 3.6389 -8.4993 -0.0071 17 7 4.0845 -9.7950 -0.0073 18 6 5.3315 -10.3413 -0.0082 19 6 5.5214 -11.6792 -0.0088 20 6 4.4392 -12.5627 -0.0080 21 6 3.1455 -12.0534 -0.0113 22 6 1.9810 -12.9517 -0.0160 23 8 0.8568 -12.4893 -0.0156 24 8 2.1604 -14.2878 -0.0207 25 6 2.9725 -10.5977 -0.0065 26 7 1.9042 -9.8231 -0.0052 27 1 -0.4850 0.8400 -0.0004 28 1 0.6247 -2.5563 -0.8919 29 1 0.6241 -2.5574 0.8881 30 1 2.8720 -3.6050 0.8873 31 1 2.8719 -3.6036 -0.8927 32 1 0.7430 -7.3712 -0.8955 33 1 0.7436 -7.3731 0.8845 34 1 4.2521 -7.6103 -0.0064 35 1 6.1917 -9.6881 -0.0084 36 1 6.5272 -12.0724 -0.0099 37 1 4.6057 -13.6298 -0.0080 38 1 1.3649 -14.8376 -0.0233 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601066411.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:51:22 Heat of formation + Delta-G solvation = -85.866284 kcal Electronic energy + Delta-G solvation = -24610.707367 eV Core-core repulsion = 20612.972106 eV Total energy + Delta-G solvation = -3997.735262 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.109 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -43.15968 -40.30247 -39.95211 -37.86154 -36.35723 -36.15596 -34.06825 -33.59449 -31.59636 -31.02695 -29.73898 -27.50923 -25.89164 -25.21520 -23.25219 -22.33666 -21.94244 -20.86083 -19.84995 -18.62814 -18.21162 -17.33683 -17.21512 -16.66259 -16.65878 -16.32240 -16.12900 -15.76028 -15.64067 -15.17624 -14.48706 -14.43249 -14.15027 -13.92446 -13.31911 -12.95999 -12.75769 -12.60152 -12.25961 -12.14567 -12.01963 -11.93165 -11.31416 -11.21854 -10.97200 -10.93823 -10.65528 -10.55840 -10.29623 -10.06216 -9.95296 -9.58845 -9.18890 -9.06047 -8.38352 -8.36592 -6.01924 -4.07117 -0.30776 0.83297 1.93662 2.05579 2.46192 2.65098 2.79890 2.80750 3.11340 3.31042 3.37340 3.39799 3.69235 3.93357 4.14944 4.25362 4.43261 4.52174 4.80601 5.03068 5.13362 5.19077 5.30807 5.33424 5.38139 5.40956 5.44170 5.72924 5.86745 6.09618 6.10815 6.14830 6.16625 6.54819 6.64557 6.90601 7.53119 7.56483 7.65880 7.72831 7.97478 8.23336 8.38815 9.00032 9.56963 11.09033 Molecular weight = 318.11amu Principal moments of inertia in cm(-1) A = 0.031568 B = 0.002054 C = 0.001932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 886.756378 B =13628.285629 C =14489.287662 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.058 3.942 3 Si 0.896 3.104 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.529 4.529 8 H 0.059 0.941 9 C 0.032 3.968 10 C -0.101 4.101 11 C 0.460 3.540 12 O -0.500 6.500 13 O -0.367 6.367 14 C 0.148 3.852 15 C 0.058 3.942 16 C -0.059 4.059 17 N -0.377 5.377 18 C 0.113 3.887 19 C -0.177 4.177 20 C -0.013 4.013 21 C -0.099 4.099 22 C 0.527 3.473 23 O -0.476 6.476 24 O -0.517 6.517 25 C 0.255 3.745 26 N -0.454 5.454 27 H 0.262 0.738 28 H 0.026 0.974 29 H 0.027 0.973 30 H 0.093 0.907 31 H 0.093 0.907 32 H 0.091 0.909 33 H 0.091 0.909 34 H 0.199 0.801 35 H 0.172 0.828 36 H 0.161 0.839 37 H 0.160 0.840 38 H 0.418 0.582 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.998 -29.628 -0.030 33.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.144 4.144 3 Si 0.724 3.276 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.567 4.567 8 H 0.077 0.923 9 C -0.005 4.005 10 C -0.138 4.138 11 C 0.303 3.697 12 O -0.386 6.386 13 O -0.285 6.285 14 C 0.072 3.928 15 C -0.071 4.071 16 C -0.188 4.188 17 N -0.050 5.050 18 C -0.010 4.010 19 C -0.198 4.198 20 C -0.036 4.036 21 C -0.103 4.103 22 C 0.368 3.632 23 O -0.362 6.362 24 O -0.330 6.330 25 C 0.007 3.993 26 N -0.173 5.173 27 H 0.072 0.928 28 H 0.045 0.955 29 H 0.045 0.955 30 H 0.111 0.889 31 H 0.111 0.889 32 H 0.109 0.891 33 H 0.109 0.891 34 H 0.216 0.784 35 H 0.189 0.811 36 H 0.179 0.821 37 H 0.177 0.823 38 H 0.277 0.723 Dipole moment (debyes) X Y Z Total from point charges 13.651 -29.279 -0.022 32.305 hybrid contribution 0.659 0.765 -0.012 1.010 sum 14.310 -28.514 -0.034 31.903 Atomic orbital electron populations 1.69993 1.06087 1.26789 1.49809 1.25027 0.94863 0.99350 0.95141 0.86537 0.79731 0.83257 0.78108 1.20617 1.21194 1.19822 1.21138 0.93040 0.90622 1.51907 0.92310 1.19035 0.93259 0.89234 0.99015 1.21772 1.00680 0.87353 1.04020 1.24787 0.88009 0.85169 0.71738 1.90666 1.15834 1.87452 1.44614 1.86423 1.42188 1.14726 1.85194 1.20675 0.90019 0.77854 1.04204 1.20522 0.91615 0.92309 1.02641 1.22590 0.96363 0.84883 1.14959 1.42906 1.06785 1.08041 1.47305 1.21909 0.86645 0.96054 0.96411 1.20695 1.00995 0.91053 1.07099 1.21869 0.89942 1.01529 0.90270 1.18853 0.92380 0.86606 1.12457 1.19999 0.88316 0.80869 0.73990 1.91038 1.25086 1.76730 1.43368 1.84496 1.43633 1.18340 1.86578 1.21230 0.81514 0.91141 1.05398 1.70542 1.25898 0.99988 1.20921 0.92815 0.95516 0.95494 0.88882 0.88877 0.89085 0.89093 0.78415 0.81107 0.82135 0.82272 0.72287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.96 13.29 55.43 0.74 -26.23 16 2 C 0.06 1.66 5.46 -17.82 -0.10 1.57 16 3 Si 0.90 21.32 29.54 -169.99 -5.02 16.30 16 4 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 5 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 6 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 7 C -0.53 -14.63 9.11 -34.44 -0.31 -14.94 16 8 H 0.06 1.52 7.74 -52.49 -0.41 1.12 16 9 C 0.03 0.83 4.26 -27.88 -0.12 0.71 16 10 C -0.10 -1.99 5.75 -27.89 -0.16 -2.15 16 11 C 0.46 8.90 7.96 36.01 0.29 9.19 16 12 O -0.50 -11.43 15.73 -18.75 -0.29 -11.73 16 13 O -0.37 -5.88 9.48 -39.27 -0.37 -6.25 16 14 C 0.15 2.26 6.09 36.01 0.22 2.48 16 15 C 0.06 0.84 7.04 -82.93 -0.58 0.25 16 16 C -0.06 -0.68 11.07 -16.41 -0.18 -0.86 16 17 N -0.38 -3.82 2.94 -61.08 -0.18 -4.00 16 18 C 0.11 0.63 10.88 -16.74 -0.18 0.44 16 19 C -0.18 -0.68 9.91 -40.14 -0.40 -1.07 16 20 C -0.01 -0.07 9.71 -38.74 -0.38 -0.45 16 21 C -0.10 -0.98 6.06 -102.65 -0.62 -1.60 16 22 C 0.53 5.51 8.27 34.31 0.28 5.79 16 23 O -0.48 -7.04 16.99 -19.31 -0.33 -7.37 16 24 O -0.52 -3.08 12.74 -40.81 -0.52 -3.60 16 25 C 0.25 3.29 7.67 -154.13 -1.18 2.10 16 26 N -0.45 -7.21 10.70 -7.56 -0.08 -7.30 16 27 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 28 H 0.03 0.76 8.10 -51.93 -0.42 0.34 16 29 H 0.03 0.76 8.10 -51.93 -0.42 0.34 16 30 H 0.09 1.67 8.14 -51.93 -0.42 1.24 16 31 H 0.09 1.66 8.14 -51.93 -0.42 1.24 16 32 H 0.09 1.41 8.13 -51.93 -0.42 0.99 16 33 H 0.09 1.41 8.13 -51.93 -0.42 0.99 16 34 H 0.20 1.79 7.83 -52.49 -0.41 1.38 16 35 H 0.17 0.33 8.06 -52.48 -0.42 -0.09 16 36 H 0.16 0.02 8.06 -52.49 -0.42 -0.40 16 37 H 0.16 0.43 7.66 -52.49 -0.40 0.03 16 38 H 0.42 0.79 9.11 45.56 0.42 1.21 16 LS Contribution 347.48 15.07 5.24 5.24 Total: -1.00 -38.84 347.48 -7.57 -46.40 By element: Atomic # 1 Polarization: 0.40 SS G_CDS: -3.32 Total: -2.91 kcal Atomic # 6 Polarization: 4.87 SS G_CDS: -3.43 Total: 1.45 kcal Atomic # 7 Polarization: -38.00 SS G_CDS: 0.48 Total: -37.52 kcal Atomic # 8 Polarization: -27.43 SS G_CDS: -1.51 Total: -28.95 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -38.84 -7.57 -46.40 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601066411.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.463 kcal (2) G-P(sol) polarization free energy of solvation -38.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.300 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.567 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.404 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds