Wall clock time and date at job start Tue Mar 31 2020 12:51:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99773 * 2 1 4 4 H 1.48496 * 109.47488 * 270.00005 * 3 2 1 5 5 H 1.48497 * 109.47417 * 30.00515 * 3 2 1 6 6 H 1.48507 * 109.46875 * 150.00186 * 3 2 1 7 7 C 1.37869 * 120.00098 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00443 * 179.97438 * 7 2 1 9 9 C 1.50701 * 120.00221 * 0.02562 * 7 2 1 10 10 C 1.52995 * 109.47398 * 179.97438 * 9 7 2 11 11 C 1.50700 * 109.47018 * 179.97438 * 10 9 7 12 12 O 1.20829 * 120.00377 * 0.02562 * 11 10 9 13 13 O 1.34235 * 120.00106 * 179.97438 * 11 10 9 14 14 C 1.45201 * 117.00160 * 180.02562 * 13 11 10 15 15 C 1.50701 * 109.46886 * 180.02562 * 14 13 11 16 16 C 1.34943 * 125.69931 * 359.97438 * 15 14 13 17 17 N 1.37012 * 107.14813 * 179.97438 * 16 15 14 18 18 C 1.36140 * 132.63742 * 179.97438 * 17 16 15 19 19 C 1.35136 * 121.73387 * 180.02562 * 18 17 16 20 20 C 1.39704 * 121.15177 * 359.97438 * 19 18 17 21 21 C 1.39034 * 119.28355 * 0.22736 * 20 19 18 22 22 C 1.47068 * 120.86643 * 179.75471 * 21 20 19 23 23 O 1.21558 * 119.99878 * 179.81738 * 22 21 20 24 24 O 1.34815 * 119.99853 * 359.82191 * 22 21 20 25 25 C 1.37152 * 106.84498 * 359.97438 * 17 16 15 26 26 N 1.31964 * 108.22787 * 359.97438 * 25 17 16 27 27 H 0.97000 * 120.00066 * 0.02562 * 1 2 3 28 28 H 1.08995 * 109.47318 * 59.99340 * 9 7 2 29 29 H 1.09004 * 109.46720 * 300.00023 * 9 7 2 30 30 H 1.09004 * 109.47258 * 59.99687 * 10 9 7 31 31 H 1.09001 * 109.47423 * 299.99268 * 10 9 7 32 32 H 1.08998 * 109.46773 * 59.99994 * 14 13 11 33 33 H 1.09005 * 109.46749 * 300.00134 * 14 13 11 34 34 H 1.08001 * 126.42576 * 0.02562 * 16 15 14 35 35 H 1.08003 * 119.13389 * 0.02562 * 18 17 16 36 36 H 1.07998 * 119.42500 * 179.97438 * 19 18 17 37 37 H 1.07997 * 120.35802 * 180.02562 * 20 19 18 38 38 H 0.96696 * 116.99863 * 179.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0017 10 6 2.2453 -3.6620 -0.0027 11 6 1.4918 -4.9671 -0.0033 12 8 0.2835 -4.9672 -0.0033 13 8 2.1629 -6.1296 -0.0047 14 6 1.3721 -7.3474 -0.0057 15 6 2.2902 -8.5425 -0.0067 16 6 3.6389 -8.4993 -0.0071 17 7 4.0845 -9.7950 -0.0073 18 6 5.3315 -10.3413 -0.0082 19 6 5.5214 -11.6792 -0.0088 20 6 4.4392 -12.5627 -0.0080 21 6 3.1455 -12.0534 -0.0113 22 6 1.9810 -12.9517 -0.0160 23 8 0.8568 -12.4893 -0.0156 24 8 2.1604 -14.2878 -0.0207 25 6 2.9725 -10.5977 -0.0065 26 7 1.9042 -9.8231 -0.0052 27 1 -0.4850 0.8400 -0.0004 28 1 0.6247 -2.5563 -0.8919 29 1 0.6241 -2.5574 0.8881 30 1 2.8720 -3.6050 0.8873 31 1 2.8719 -3.6036 -0.8927 32 1 0.7430 -7.3712 -0.8955 33 1 0.7436 -7.3731 0.8845 34 1 4.2521 -7.6103 -0.0064 35 1 6.1917 -9.6881 -0.0084 36 1 6.5272 -12.0724 -0.0099 37 1 4.6057 -13.6298 -0.0080 38 1 1.3649 -14.8376 -0.0233 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601066411.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:51:21 Heat of formation + Delta-G solvation = -112.611402 kcal Electronic energy + Delta-G solvation = -24611.867123 eV Core-core repulsion = 20612.972106 eV Total energy + Delta-G solvation = -3998.895017 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.109 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -43.92619 -41.51883 -40.99406 -38.59132 -37.61348 -37.01703 -35.63991 -34.76828 -33.22571 -32.19682 -30.55097 -28.67508 -27.56357 -25.99187 -24.27705 -23.80878 -22.66856 -21.82498 -21.45993 -19.37886 -19.08006 -18.80590 -18.15262 -17.86628 -17.81947 -17.30469 -17.15575 -17.03365 -16.46140 -16.44285 -16.02773 -15.41917 -15.15870 -14.83094 -14.63617 -14.21158 -14.18083 -13.73840 -13.40186 -13.19283 -13.08440 -12.92306 -12.80397 -12.64067 -12.49151 -12.03269 -11.99891 -11.88782 -11.75082 -11.74289 -11.47216 -11.27210 -11.16640 -10.56537 -9.84850 -9.09621 -8.18424 -6.32345 -0.86292 0.20268 1.21785 1.28863 1.36104 1.40386 1.46967 1.47192 1.58415 1.62840 2.08329 2.43940 2.43966 2.91736 3.15583 3.33986 3.57066 3.78078 3.87623 3.91967 4.07818 4.13479 4.15611 4.41596 4.49098 4.50910 4.65477 4.69493 4.91952 4.94010 4.98213 5.25075 5.32865 5.38082 5.49366 5.57054 5.57592 5.82492 5.94700 6.13982 6.68198 6.76703 6.87390 6.97308 7.38045 8.94322 Molecular weight = 318.11amu Principal moments of inertia in cm(-1) A = 0.031568 B = 0.002054 C = 0.001932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 886.756378 B =13628.285629 C =14489.287662 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.008 4.008 3 Si 0.976 3.024 4 H -0.272 1.272 5 H -0.288 1.288 6 H -0.253 1.253 7 C -0.541 4.541 8 H 0.082 0.918 9 C 0.035 3.965 10 C -0.088 4.088 11 C 0.468 3.532 12 O -0.544 6.544 13 O -0.344 6.344 14 C 0.154 3.846 15 C 0.019 3.981 16 C -0.047 4.047 17 N -0.378 5.378 18 C 0.108 3.892 19 C -0.163 4.163 20 C 0.030 3.970 21 C -0.153 4.153 22 C 0.532 3.468 23 O -0.539 6.539 24 O -0.498 6.498 25 C 0.241 3.759 26 N -0.515 5.515 27 H 0.263 0.737 28 H -0.012 1.012 29 H -0.011 1.011 30 H 0.122 0.878 31 H 0.122 0.878 32 H 0.078 0.922 33 H 0.078 0.922 34 H 0.224 0.776 35 H 0.215 0.785 36 H 0.214 0.786 37 H 0.195 0.805 38 H 0.435 0.565 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.717 -31.070 -0.027 37.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.205 4.205 3 Si 0.800 3.200 4 H -0.198 1.198 5 H -0.214 1.214 6 H -0.177 1.177 7 C -0.579 4.579 8 H 0.100 0.900 9 C -0.002 4.002 10 C -0.125 4.125 11 C 0.314 3.686 12 O -0.433 6.433 13 O -0.260 6.260 14 C 0.079 3.921 15 C -0.108 4.108 16 C -0.176 4.176 17 N -0.051 5.051 18 C -0.014 4.014 19 C -0.183 4.183 20 C 0.007 3.993 21 C -0.157 4.157 22 C 0.376 3.624 23 O -0.430 6.430 24 O -0.312 6.312 25 C -0.008 4.008 26 N -0.236 5.236 27 H 0.072 0.928 28 H 0.007 0.993 29 H 0.007 0.993 30 H 0.140 0.860 31 H 0.140 0.860 32 H 0.096 0.904 33 H 0.096 0.904 34 H 0.241 0.759 35 H 0.231 0.769 36 H 0.231 0.769 37 H 0.212 0.788 38 H 0.297 0.703 Dipole moment (debyes) X Y Z Total from point charges 19.446 -30.786 -0.019 36.413 hybrid contribution -0.943 0.938 -0.014 1.330 sum 18.503 -29.848 -0.033 35.117 Atomic orbital electron populations 1.70174 1.08328 1.27891 1.51362 1.26141 0.95728 1.04020 0.94633 0.85287 0.78685 0.77585 0.78482 1.19762 1.21440 1.17703 1.21650 0.94233 0.91093 1.50897 0.90034 1.18835 0.93823 0.92150 0.95440 1.21536 0.99192 0.85030 1.06776 1.24681 0.87236 0.86080 0.70647 1.90663 1.17780 1.88116 1.46783 1.86369 1.41171 1.14125 1.84328 1.20551 0.90372 0.78038 1.03109 1.20320 0.92874 0.91574 1.06077 1.22793 0.95320 0.86233 1.13296 1.43061 1.07836 1.07121 1.47043 1.22919 0.85793 0.97789 0.94876 1.21409 1.02661 0.89985 1.04214 1.22466 0.88328 1.03639 0.84846 1.19024 0.94013 0.85321 1.17385 1.20271 0.87849 0.81906 0.72346 1.91011 1.27340 1.77867 1.46786 1.84441 1.44603 1.16539 1.85636 1.21648 0.81770 0.92503 1.04850 1.70392 1.28622 1.00924 1.23692 0.92838 0.99309 0.99285 0.85981 0.85960 0.90353 0.90363 0.75933 0.76862 0.76877 0.78789 0.70277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.74 13.29 21.44 0.28 -58.46 16 2 C -0.01 -0.44 5.46 84.65 0.46 0.02 16 3 Si 0.98 43.50 29.54 68.60 2.03 45.52 16 4 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 5 H -0.29 -12.86 7.11 99.48 0.71 -12.15 16 6 H -0.25 -10.40 7.11 99.48 0.71 -9.69 16 7 C -0.54 -29.85 9.11 25.60 0.23 -29.62 16 8 H 0.08 4.04 7.74 -2.91 -0.02 4.01 16 9 C 0.03 1.88 4.26 29.85 0.13 2.01 16 10 C -0.09 -3.43 5.75 29.85 0.17 -3.26 16 11 C 0.47 18.58 7.96 71.24 0.57 19.14 16 12 O -0.54 -26.46 15.73 21.95 0.35 -26.11 16 13 O -0.34 -11.10 9.48 -51.47 -0.49 -11.59 16 14 C 0.15 5.10 6.09 71.24 0.43 5.53 16 15 C 0.02 0.59 7.04 41.51 0.29 0.88 16 16 C -0.05 -1.04 11.07 83.13 0.92 -0.12 16 17 N -0.38 -6.94 2.94 -347.17 -1.02 -7.96 16 18 C 0.11 0.67 10.88 83.31 0.91 1.58 16 19 C -0.16 -0.25 9.91 21.91 0.22 -0.04 16 20 C 0.03 0.20 9.71 22.82 0.22 0.42 16 21 C -0.15 -2.89 6.06 -18.59 -0.11 -3.00 16 22 C 0.53 11.35 8.27 70.14 0.58 11.93 16 23 O -0.54 -17.38 16.99 19.65 0.33 -17.05 16 24 O -0.50 -5.23 12.74 -57.27 -0.73 -5.96 16 25 C 0.24 6.29 7.67 135.78 1.04 7.33 16 26 N -0.52 -17.67 10.70 -177.82 -1.90 -19.58 16 27 H 0.26 15.47 8.31 -92.71 -0.77 14.70 16 28 H -0.01 -0.70 8.10 -2.39 -0.02 -0.72 16 29 H -0.01 -0.69 8.10 -2.38 -0.02 -0.71 16 30 H 0.12 4.09 8.14 -2.39 -0.02 4.07 16 31 H 0.12 4.09 8.14 -2.39 -0.02 4.08 16 32 H 0.08 2.72 8.13 -2.39 -0.02 2.70 16 33 H 0.08 2.71 8.13 -2.38 -0.02 2.69 16 34 H 0.22 3.47 7.83 -2.91 -0.02 3.45 16 35 H 0.21 -0.56 8.06 -2.91 -0.02 -0.58 16 36 H 0.21 -1.78 8.06 -2.91 -0.02 -1.81 16 37 H 0.20 -0.09 7.66 -2.91 -0.02 -0.12 16 38 H 0.43 1.24 9.11 -74.06 -0.67 0.56 16 Total: -1.00 -94.25 347.48 5.35 -88.90 By element: Atomic # 1 Polarization: -0.96 SS G_CDS: 0.44 Total: -0.51 kcal Atomic # 6 Polarization: 6.74 SS G_CDS: 6.06 Total: 12.80 kcal Atomic # 7 Polarization: -83.36 SS G_CDS: -2.64 Total: -86.00 kcal Atomic # 8 Polarization: -60.17 SS G_CDS: -0.54 Total: -60.71 kcal Atomic # 14 Polarization: 43.50 SS G_CDS: 2.03 Total: 45.52 kcal Total: -94.25 5.35 -88.90 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601066411.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.716 kcal (2) G-P(sol) polarization free energy of solvation -94.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.895 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.611 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds