Wall clock time and date at job start Tue Mar 31 2020 12:49:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86789 * 120.00344 * 2 1 4 4 H 1.48502 * 109.47108 * 274.03410 * 3 2 1 5 5 H 1.48500 * 109.47266 * 34.03390 * 3 2 1 6 6 H 1.48500 * 109.47248 * 154.03729 * 3 2 1 7 7 C 1.38959 * 119.99546 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99981 * 346.97515 * 7 2 1 9 9 N 1.37093 * 119.99545 * 166.97243 * 7 2 1 10 10 C 1.46501 * 119.99649 * 131.52870 * 9 7 2 11 11 C 1.50703 * 109.46989 * 91.95859 * 10 9 7 12 12 O 1.20827 * 120.00202 * 4.25190 * 11 10 9 13 13 O 1.34237 * 120.00203 * 184.24771 * 11 10 9 14 14 C 1.34769 * 120.00522 * 311.80460 * 9 7 2 15 15 O 1.21299 * 120.00096 * 0.02562 * 14 9 7 16 16 C 1.50703 * 120.00457 * 179.97438 * 14 9 7 17 17 N 1.46495 * 109.47628 * 179.97438 * 16 14 9 18 18 C 1.34377 * 123.87410 * 90.02434 * 17 16 14 19 19 O 1.21284 * 126.43847 * 359.94254 * 18 17 16 20 20 C 1.51390 * 107.11330 * 179.97438 * 18 17 16 21 21 C 1.51137 * 104.06872 * 359.97438 * 20 18 17 22 22 C 1.37676 * 132.84847 * 180.02562 * 21 20 18 23 23 C 1.38402 * 119.91234 * 179.97438 * 22 21 20 24 24 C 1.38306 * 119.82495 * 359.97438 * 23 22 21 25 25 C 1.37936 * 120.37431 * 0.02562 * 24 23 22 26 26 C 1.38899 * 106.34080 * 359.78453 * 21 20 18 27 27 H 0.97009 * 119.99506 * 0.02562 * 1 2 3 28 28 H 1.09000 * 109.47525 * 211.95973 * 10 9 7 29 29 H 1.09004 * 109.47126 * 331.96315 * 10 9 7 30 30 H 0.96695 * 117.00346 * 180.02562 * 13 11 10 31 31 H 1.09000 * 109.47135 * 300.00462 * 16 14 9 32 32 H 1.09001 * 109.46704 * 59.99975 * 16 14 9 33 33 H 1.08995 * 110.51183 * 118.64691 * 20 18 17 34 34 H 1.09001 * 110.50805 * 241.21778 * 20 18 17 35 35 H 1.07995 * 120.04619 * 359.93609 * 22 21 20 36 36 H 1.07996 * 120.08326 * 180.02562 * 23 22 21 37 37 H 1.08000 * 119.80851 * 180.02562 * 24 23 22 38 38 H 1.08006 * 119.93057 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6176 0.0000 4 1 2.4104 2.0955 -1.3966 5 1 1.4909 2.6265 0.7836 6 1 3.5858 1.4168 0.6129 7 6 2.0088 -1.2035 0.0005 8 1 1.4896 -2.1266 0.2117 9 7 3.3533 -1.2189 -0.2671 10 6 4.2664 -1.9554 0.6104 11 6 4.4450 -3.3571 0.0867 12 8 3.9307 -3.6821 -0.9573 13 8 5.1755 -4.2447 0.7798 14 6 3.8357 -0.5519 -1.3342 15 8 3.0804 0.0624 -2.0577 16 6 5.3137 -0.5684 -1.6281 17 7 5.5814 0.2237 -2.8310 18 6 5.8541 1.5394 -2.8160 19 8 5.9175 2.2509 -1.8358 20 6 6.0665 1.9667 -4.2528 21 6 5.8706 0.6958 -5.0468 22 6 5.9285 0.4148 -6.3933 23 6 5.6993 -0.8751 -6.8397 24 6 5.4133 -1.8771 -5.9302 25 6 5.3548 -1.5981 -4.5806 26 6 5.5889 -0.3026 -4.1232 27 1 -0.4850 0.8402 -0.0004 28 1 5.2323 -1.4510 0.6354 29 1 3.8505 -1.9940 1.6173 30 1 5.2620 -5.1313 0.4037 31 1 5.8567 -0.1430 -0.7841 32 1 5.6405 -1.5956 -1.7898 33 1 5.3288 2.7154 -4.5415 34 1 7.0761 2.3536 -4.3909 35 1 6.1519 1.1999 -7.1005 36 1 5.7444 -1.0987 -7.8953 37 1 5.2349 -2.8836 -6.2787 38 1 5.1305 -2.3860 -3.8767 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601070040.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:49:46 Heat of formation + Delta-G solvation = -89.705516 kcal Electronic energy + Delta-G solvation = -27452.667395 eV Core-core repulsion = 23454.765652 eV Total energy + Delta-G solvation = -3997.901743 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.109 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.47315 -40.07741 -38.74974 -38.19924 -35.91850 -35.65436 -34.59713 -33.02900 -32.14871 -30.29338 -28.22078 -28.06300 -27.42673 -24.23703 -22.42164 -21.83340 -21.64127 -20.55074 -19.28022 -17.88417 -17.62544 -17.12389 -16.75283 -16.62938 -16.00475 -15.77838 -15.57440 -15.43371 -14.91679 -14.56193 -14.14808 -13.84132 -13.76031 -13.34174 -13.05735 -12.98609 -12.87305 -12.78953 -12.36378 -12.25882 -12.03069 -11.83939 -11.67310 -11.20037 -11.08634 -10.91717 -10.57323 -10.36990 -10.21522 -9.99752 -9.96031 -8.85916 -8.81808 -8.68629 -7.90070 -7.75356 -6.27322 -4.15968 1.24821 1.36771 2.50796 2.54187 2.83930 2.99940 3.32289 3.44119 3.64081 3.76848 3.82174 4.19839 4.23078 4.41156 4.46269 4.84879 4.97287 4.98189 5.11141 5.17937 5.28191 5.33276 5.35670 5.40772 5.43744 5.50677 5.65629 5.74790 5.79435 5.87002 6.12310 6.36681 6.51334 6.62679 6.71200 6.82297 7.19844 7.71047 7.78243 8.03280 8.19161 8.56267 8.71046 9.27304 9.53881 10.77656 Molecular weight = 318.11amu Principal moments of inertia in cm(-1) A = 0.011660 B = 0.006251 C = 0.004996 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2400.851074 B = 4478.513498 C = 5602.965223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.864 5.864 2 C 0.093 3.907 3 Si 0.909 3.091 4 H -0.260 1.260 5 H -0.302 1.302 6 H -0.277 1.277 7 C -0.346 4.346 8 H 0.095 0.905 9 N -0.449 5.449 10 C 0.109 3.891 11 C 0.452 3.548 12 O -0.496 6.496 13 O -0.524 6.524 14 C 0.450 3.550 15 O -0.515 6.515 16 C 0.086 3.914 17 N -0.529 5.529 18 C 0.529 3.471 19 O -0.501 6.501 20 C -0.109 4.109 21 C -0.145 4.145 22 C -0.069 4.069 23 C -0.148 4.148 24 C -0.084 4.084 25 C -0.131 4.131 26 C 0.162 3.838 27 H 0.274 0.726 28 H 0.100 0.900 29 H 0.126 0.874 30 H 0.402 0.598 31 H 0.108 0.892 32 H 0.103 0.897 33 H 0.122 0.878 34 H 0.121 0.879 35 H 0.126 0.874 36 H 0.126 0.874 37 H 0.128 0.872 38 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.252 -3.729 -7.474 18.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.498 5.498 2 C -0.116 4.116 3 Si 0.738 3.262 4 H -0.185 1.185 5 H -0.231 1.231 6 H -0.202 1.202 7 C -0.472 4.472 8 H 0.113 0.887 9 N -0.173 5.173 10 C -0.018 4.018 11 C 0.291 3.709 12 O -0.382 6.382 13 O -0.336 6.336 14 C 0.238 3.762 15 O -0.394 6.394 16 C -0.040 4.040 17 N -0.250 5.250 18 C 0.319 3.681 19 O -0.376 6.376 20 C -0.148 4.148 21 C -0.148 4.148 22 C -0.087 4.087 23 C -0.167 4.167 24 C -0.103 4.103 25 C -0.152 4.152 26 C 0.066 3.934 27 H 0.084 0.916 28 H 0.118 0.882 29 H 0.144 0.856 30 H 0.260 0.740 31 H 0.126 0.874 32 H 0.121 0.879 33 H 0.140 0.860 34 H 0.138 0.862 35 H 0.144 0.856 36 H 0.144 0.856 37 H 0.146 0.854 38 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 15.489 -2.599 -7.275 17.309 hybrid contribution 0.194 -0.112 -0.042 0.228 sum 15.683 -2.711 -7.317 17.517 Atomic orbital electron populations 1.69699 1.06617 1.28298 1.45160 1.25325 0.95013 0.99320 0.91959 0.86376 0.78967 0.82072 0.78739 1.18525 1.23093 1.20174 1.18765 0.80086 0.95406 1.52893 0.88715 1.43264 1.07264 1.45445 1.21372 1.21219 0.97058 0.85837 0.97641 1.24742 0.74531 0.88975 0.82619 1.90744 1.44613 1.79177 1.23643 1.84566 1.67907 1.26022 1.55079 1.20651 0.89326 0.84389 0.81801 1.90592 1.58375 1.43108 1.47279 1.21659 0.97212 0.97165 0.87932 1.45399 1.64644 1.09735 1.05204 1.20622 0.75177 0.80804 0.91538 1.90769 1.50857 1.56664 1.39269 1.21003 1.05359 0.97302 0.91133 1.19771 1.07028 0.94329 0.93706 1.20182 0.98821 0.96925 0.92779 1.20988 1.03418 0.92710 0.99556 1.20847 0.97992 0.99570 0.91859 1.20452 1.04081 0.94186 0.96484 1.18146 0.97408 0.94380 0.83457 0.91572 0.88191 0.85576 0.73983 0.87402 0.87921 0.85997 0.86164 0.85595 0.85590 0.85404 0.85638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -26.57 13.96 55.50 0.77 -25.80 16 2 C 0.09 2.77 5.00 -17.46 -0.09 2.69 16 3 Si 0.91 25.03 24.71 -169.99 -4.20 20.83 16 4 H -0.26 -7.71 6.46 56.52 0.37 -7.34 16 5 H -0.30 -8.10 7.11 56.52 0.40 -7.70 16 6 H -0.28 -7.29 7.10 56.52 0.40 -6.89 16 7 C -0.35 -9.74 9.62 -14.93 -0.14 -9.89 16 8 H 0.10 2.84 8.06 -52.49 -0.42 2.42 16 9 N -0.45 -10.63 1.61 -116.09 -0.19 -10.81 16 10 C 0.11 1.87 5.75 -5.19 -0.03 1.84 16 11 C 0.45 7.34 8.12 36.01 0.29 7.63 16 12 O -0.50 -10.01 17.13 -18.75 -0.32 -10.33 16 13 O -0.52 -6.20 13.42 -39.28 -0.53 -6.73 16 14 C 0.45 10.83 5.80 -10.99 -0.06 10.76 16 15 O -0.51 -14.63 12.36 5.54 0.07 -14.57 16 16 C 0.09 1.60 4.80 -5.19 -0.02 1.57 16 17 N -0.53 -9.76 2.22 -114.54 -0.25 -10.02 16 18 C 0.53 9.81 8.23 -10.83 -0.09 9.72 16 19 O -0.50 -10.81 17.67 5.55 0.10 -10.72 16 20 C -0.11 -1.48 6.88 -28.48 -0.20 -1.67 16 21 C -0.15 -2.04 6.35 -104.37 -0.66 -2.70 16 22 C -0.07 -0.78 10.04 -39.73 -0.40 -1.18 16 23 C -0.15 -1.60 10.07 -39.50 -0.40 -2.00 16 24 C -0.08 -1.03 10.02 -39.67 -0.40 -1.42 16 25 C -0.13 -1.98 9.74 -39.27 -0.38 -2.36 16 26 C 0.16 2.67 6.69 -83.69 -0.56 2.11 16 27 H 0.27 7.95 8.31 -40.82 -0.34 7.61 16 28 H 0.10 1.36 6.51 -51.93 -0.34 1.02 16 29 H 0.13 1.98 8.02 -51.93 -0.42 1.56 16 30 H 0.40 3.06 9.10 45.56 0.41 3.48 16 31 H 0.11 1.80 7.20 -51.93 -0.37 1.42 16 32 H 0.10 1.61 7.31 -51.93 -0.38 1.24 16 33 H 0.12 1.55 8.14 -51.93 -0.42 1.13 16 34 H 0.12 1.22 8.14 -51.93 -0.42 0.80 16 35 H 0.13 1.05 8.06 -52.49 -0.42 0.63 16 36 H 0.13 1.00 8.06 -52.49 -0.42 0.58 16 37 H 0.13 1.25 8.06 -52.49 -0.42 0.82 16 38 H 0.13 1.95 7.70 -52.48 -0.40 1.54 16 LS Contribution 333.51 15.07 5.03 5.03 Total: -1.00 -39.81 333.51 -5.87 -45.68 By element: Atomic # 1 Polarization: 5.54 SS G_CDS: -3.21 Total: 2.33 kcal Atomic # 6 Polarization: 18.24 SS G_CDS: -3.14 Total: 15.10 kcal Atomic # 7 Polarization: -46.96 SS G_CDS: 0.33 Total: -46.63 kcal Atomic # 8 Polarization: -41.66 SS G_CDS: -0.68 Total: -42.34 kcal Atomic # 14 Polarization: 25.03 SS G_CDS: -4.20 Total: 20.83 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -39.81 -5.87 -45.68 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601070040.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.023 kcal (2) G-P(sol) polarization free energy of solvation -39.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.870 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.682 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.706 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds