Wall clock time and date at job start Tue Mar 31 2020 12:49:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86789 * 120.00344 * 2 1 4 4 H 1.48502 * 109.47108 * 274.03410 * 3 2 1 5 5 H 1.48500 * 109.47266 * 34.03390 * 3 2 1 6 6 H 1.48500 * 109.47248 * 154.03729 * 3 2 1 7 7 C 1.38959 * 119.99546 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99981 * 346.97515 * 7 2 1 9 9 N 1.37093 * 119.99545 * 166.97243 * 7 2 1 10 10 C 1.46501 * 119.99649 * 131.52870 * 9 7 2 11 11 C 1.50703 * 109.46989 * 91.95859 * 10 9 7 12 12 O 1.20827 * 120.00202 * 4.25190 * 11 10 9 13 13 O 1.34237 * 120.00203 * 184.24771 * 11 10 9 14 14 C 1.34769 * 120.00522 * 311.80460 * 9 7 2 15 15 O 1.21299 * 120.00096 * 0.02562 * 14 9 7 16 16 C 1.50703 * 120.00457 * 179.97438 * 14 9 7 17 17 N 1.46495 * 109.47628 * 179.97438 * 16 14 9 18 18 C 1.34377 * 123.87410 * 90.02434 * 17 16 14 19 19 O 1.21284 * 126.43847 * 359.94254 * 18 17 16 20 20 C 1.51390 * 107.11330 * 179.97438 * 18 17 16 21 21 C 1.51137 * 104.06872 * 359.97438 * 20 18 17 22 22 C 1.37676 * 132.84847 * 180.02562 * 21 20 18 23 23 C 1.38402 * 119.91234 * 179.97438 * 22 21 20 24 24 C 1.38306 * 119.82495 * 359.97438 * 23 22 21 25 25 C 1.37936 * 120.37431 * 0.02562 * 24 23 22 26 26 C 1.38899 * 106.34080 * 359.78453 * 21 20 18 27 27 H 0.97009 * 119.99506 * 0.02562 * 1 2 3 28 28 H 1.09000 * 109.47525 * 211.95973 * 10 9 7 29 29 H 1.09004 * 109.47126 * 331.96315 * 10 9 7 30 30 H 0.96695 * 117.00346 * 180.02562 * 13 11 10 31 31 H 1.09000 * 109.47135 * 300.00462 * 16 14 9 32 32 H 1.09001 * 109.46704 * 59.99975 * 16 14 9 33 33 H 1.08995 * 110.51183 * 118.64691 * 20 18 17 34 34 H 1.09001 * 110.50805 * 241.21778 * 20 18 17 35 35 H 1.07995 * 120.04619 * 359.93609 * 22 21 20 36 36 H 1.07996 * 120.08326 * 180.02562 * 23 22 21 37 37 H 1.08000 * 119.80851 * 180.02562 * 24 23 22 38 38 H 1.08006 * 119.93057 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6176 0.0000 4 1 2.4104 2.0955 -1.3966 5 1 1.4909 2.6265 0.7836 6 1 3.5858 1.4168 0.6129 7 6 2.0088 -1.2035 0.0005 8 1 1.4896 -2.1266 0.2117 9 7 3.3533 -1.2189 -0.2671 10 6 4.2664 -1.9554 0.6104 11 6 4.4450 -3.3571 0.0867 12 8 3.9307 -3.6821 -0.9573 13 8 5.1755 -4.2447 0.7798 14 6 3.8357 -0.5519 -1.3342 15 8 3.0804 0.0624 -2.0577 16 6 5.3137 -0.5684 -1.6281 17 7 5.5814 0.2237 -2.8310 18 6 5.8541 1.5394 -2.8160 19 8 5.9175 2.2509 -1.8358 20 6 6.0665 1.9667 -4.2528 21 6 5.8706 0.6958 -5.0468 22 6 5.9285 0.4148 -6.3933 23 6 5.6993 -0.8751 -6.8397 24 6 5.4133 -1.8771 -5.9302 25 6 5.3548 -1.5981 -4.5806 26 6 5.5889 -0.3026 -4.1232 27 1 -0.4850 0.8402 -0.0004 28 1 5.2323 -1.4510 0.6354 29 1 3.8505 -1.9940 1.6173 30 1 5.2620 -5.1313 0.4037 31 1 5.8567 -0.1430 -0.7841 32 1 5.6405 -1.5956 -1.7898 33 1 5.3288 2.7154 -4.5415 34 1 7.0761 2.3536 -4.3909 35 1 6.1519 1.1999 -7.1005 36 1 5.7444 -1.0987 -7.8953 37 1 5.2349 -2.8836 -6.2787 38 1 5.1305 -2.3860 -3.8767 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601070040.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:49:46 Heat of formation + Delta-G solvation = -119.328859 kcal Electronic energy + Delta-G solvation = -27453.951959 eV Core-core repulsion = 23454.765652 eV Total energy + Delta-G solvation = -3999.186308 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.109 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.71902 -41.50031 -40.37526 -39.45487 -37.23640 -36.92766 -36.39203 -34.57110 -33.94417 -31.42527 -29.81081 -29.31525 -28.69782 -26.13341 -23.56470 -23.21171 -22.68719 -22.02023 -20.86818 -19.51187 -19.13515 -18.39603 -18.17995 -18.02422 -17.54243 -17.15688 -16.94688 -16.81296 -16.49464 -16.02248 -15.60529 -15.24657 -15.08368 -14.95843 -14.74166 -14.36743 -14.18831 -14.00316 -13.91954 -13.64088 -13.36844 -13.23703 -13.18154 -12.76970 -12.49232 -12.45634 -12.16875 -11.88787 -11.83598 -11.71560 -11.31626 -10.98028 -10.65919 -9.86544 -9.80425 -8.97128 -8.54286 -6.40237 0.19758 0.38871 1.08145 1.19376 1.22445 1.23926 1.39143 1.55375 1.61564 2.10861 2.27705 2.55222 2.84494 2.89913 3.07842 3.34731 3.57380 3.74993 3.84502 3.86363 4.05782 4.11253 4.30607 4.37424 4.43412 4.43805 4.47076 4.58742 4.76917 4.91312 5.07786 5.42765 5.52087 5.55490 5.57708 5.62699 5.73043 5.75345 6.10098 6.48305 6.67112 6.71611 7.02268 7.11180 7.57234 8.54722 Molecular weight = 318.11amu Principal moments of inertia in cm(-1) A = 0.011660 B = 0.006251 C = 0.004996 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2400.851074 B = 4478.513498 C = 5602.965223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.052 3.948 3 Si 0.958 3.042 4 H -0.297 1.297 5 H -0.295 1.295 6 H -0.259 1.259 7 C -0.334 4.334 8 H 0.067 0.933 9 N -0.464 5.464 10 C 0.099 3.901 11 C 0.468 3.532 12 O -0.542 6.542 13 O -0.502 6.502 14 C 0.444 3.556 15 O -0.568 6.568 16 C 0.093 3.907 17 N -0.537 5.537 18 C 0.511 3.489 19 O -0.547 6.547 20 C -0.098 4.098 21 C -0.149 4.149 22 C -0.063 4.063 23 C -0.134 4.134 24 C -0.089 4.089 25 C -0.151 4.151 26 C 0.119 3.881 27 H 0.275 0.725 28 H 0.144 0.856 29 H 0.143 0.857 30 H 0.426 0.574 31 H 0.129 0.871 32 H 0.129 0.871 33 H 0.130 0.870 34 H 0.159 0.841 35 H 0.164 0.836 36 H 0.165 0.835 37 H 0.151 0.849 38 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.317 -4.195 -9.029 21.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.152 4.152 3 Si 0.788 3.212 4 H -0.225 1.225 5 H -0.223 1.223 6 H -0.183 1.183 7 C -0.461 4.461 8 H 0.085 0.915 9 N -0.188 5.188 10 C -0.025 4.025 11 C 0.309 3.691 12 O -0.432 6.432 13 O -0.315 6.315 14 C 0.234 3.766 15 O -0.450 6.450 16 C -0.033 4.033 17 N -0.258 5.258 18 C 0.303 3.697 19 O -0.425 6.425 20 C -0.137 4.137 21 C -0.151 4.151 22 C -0.081 4.081 23 C -0.153 4.153 24 C -0.107 4.107 25 C -0.172 4.172 26 C 0.024 3.976 27 H 0.085 0.915 28 H 0.162 0.838 29 H 0.161 0.839 30 H 0.288 0.712 31 H 0.147 0.853 32 H 0.147 0.853 33 H 0.148 0.852 34 H 0.176 0.824 35 H 0.182 0.818 36 H 0.182 0.818 37 H 0.168 0.832 38 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 18.612 -3.141 -8.803 20.827 hybrid contribution -0.674 -0.192 0.325 0.772 sum 17.938 -3.333 -8.478 20.118 Atomic orbital electron populations 1.69771 1.07671 1.28770 1.48124 1.25844 0.95403 1.01472 0.92529 0.85598 0.79093 0.79998 0.76558 1.22469 1.22326 1.18339 1.18602 0.82589 0.93863 1.51093 0.91531 1.43388 1.06612 1.46191 1.22590 1.21509 0.97738 0.86284 0.96988 1.24273 0.73974 0.89087 0.81734 1.90753 1.46774 1.79955 1.25719 1.84482 1.66148 1.27020 1.53830 1.21618 0.91549 0.82582 0.80844 1.90550 1.60318 1.45205 1.48946 1.21615 0.93002 0.99203 0.89445 1.45564 1.64418 1.09972 1.05851 1.21513 0.74410 0.80679 0.93147 1.90720 1.53149 1.57550 1.41033 1.21051 1.07692 0.97318 0.87605 1.20042 1.06956 0.93590 0.94532 1.20662 0.97156 0.98240 0.92087 1.21494 1.00696 0.91938 1.01158 1.21203 0.97321 1.01359 0.90829 1.20566 1.05337 0.93561 0.97734 1.18493 1.00252 0.95673 0.83162 0.91505 0.83831 0.83884 0.71211 0.85344 0.85313 0.85190 0.82359 0.81833 0.81766 0.83167 0.87315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -57.93 13.96 21.67 0.30 -57.63 16 2 C 0.05 3.21 5.00 84.93 0.43 3.64 16 3 Si 0.96 53.39 24.71 68.60 1.70 55.09 16 4 H -0.30 -18.30 6.46 99.48 0.64 -17.66 16 5 H -0.30 -15.74 7.11 99.48 0.71 -15.03 16 6 H -0.26 -13.43 7.10 99.48 0.71 -12.72 16 7 C -0.33 -19.36 9.62 84.04 0.81 -18.55 16 8 H 0.07 4.16 8.06 -2.91 -0.02 4.14 16 9 N -0.46 -21.98 1.61 -639.58 -1.03 -23.01 16 10 C 0.10 3.23 5.75 85.63 0.49 3.72 16 11 C 0.47 14.35 8.12 71.24 0.58 14.93 16 12 O -0.54 -21.69 17.13 21.96 0.38 -21.31 16 13 O -0.50 -10.23 13.42 -51.48 -0.69 -10.92 16 14 C 0.44 21.56 5.80 87.66 0.51 22.07 16 15 O -0.57 -33.34 12.36 -3.09 -0.04 -33.38 16 16 C 0.09 3.40 4.80 85.64 0.41 3.81 16 17 N -0.54 -19.68 2.22 -634.90 -1.41 -21.09 16 18 C 0.51 18.78 8.23 87.94 0.72 19.51 16 19 O -0.55 -23.73 17.67 -3.04 -0.05 -23.79 16 20 C -0.10 -2.48 6.88 29.46 0.20 -2.28 16 21 C -0.15 -3.82 6.35 -19.70 -0.13 -3.95 16 22 C -0.06 -1.18 10.04 22.18 0.22 -0.96 16 23 C -0.13 -2.35 10.07 22.33 0.22 -2.12 16 24 C -0.09 -1.96 10.02 22.21 0.22 -1.73 16 25 C -0.15 -4.49 9.74 22.47 0.22 -4.27 16 26 C 0.12 3.83 6.69 38.35 0.26 4.09 16 27 H 0.28 16.63 8.31 -92.70 -0.77 15.86 16 28 H 0.14 3.41 6.51 -2.39 -0.02 3.40 16 29 H 0.14 4.18 8.02 -2.38 -0.02 4.17 16 30 H 0.43 5.04 9.10 -74.06 -0.67 4.36 16 31 H 0.13 4.08 7.20 -2.39 -0.02 4.06 16 32 H 0.13 3.92 7.31 -2.39 -0.02 3.91 16 33 H 0.13 3.09 8.14 -2.39 -0.02 3.07 16 34 H 0.16 2.70 8.14 -2.39 -0.02 2.68 16 35 H 0.16 1.81 8.06 -2.91 -0.02 1.78 16 36 H 0.16 1.65 8.06 -2.91 -0.02 1.63 16 37 H 0.15 2.52 8.06 -2.91 -0.02 2.50 16 38 H 0.11 3.46 7.70 -2.91 -0.02 3.44 16 Total: -1.00 -93.27 333.51 4.71 -88.56 By element: Atomic # 1 Polarization: 9.19 SS G_CDS: 0.39 Total: 9.58 kcal Atomic # 6 Polarization: 32.73 SS G_CDS: 5.17 Total: 37.90 kcal Atomic # 7 Polarization: -99.60 SS G_CDS: -2.13 Total: -101.73 kcal Atomic # 8 Polarization: -89.00 SS G_CDS: -0.41 Total: -89.40 kcal Atomic # 14 Polarization: 53.39 SS G_CDS: 1.70 Total: 55.09 kcal Total: -93.27 4.71 -88.56 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601070040.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.770 kcal (2) G-P(sol) polarization free energy of solvation -93.270 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.711 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.559 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds