Wall clock time and date at job start Tue Mar 31 2020 12:48:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31346 * 1 3 3 Si 1.86794 * 120.00220 * 2 1 4 4 H 1.48499 * 109.47115 * 245.05395 * 3 2 1 5 5 H 1.48500 * 109.46994 * 5.05577 * 3 2 1 6 6 H 1.48498 * 109.47087 * 125.05323 * 3 2 1 7 7 C 1.39023 * 119.99716 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99327 * 184.24241 * 7 2 1 9 9 N 1.36891 * 119.99883 * 4.24029 * 7 2 1 10 10 C 1.38213 * 125.61180 * 130.39061 * 9 7 2 11 11 C 1.46889 * 125.44111 * 359.96063 * 10 9 7 12 12 O 1.21663 * 119.99742 * 184.90771 * 11 10 9 13 13 N 1.34772 * 119.99702 * 4.91289 * 11 10 9 14 14 C 1.46505 * 119.99830 * 175.04385 * 13 11 10 15 15 C 1.52995 * 109.47108 * 184.91390 * 14 13 11 16 16 H 1.09002 * 109.47233 * 56.00529 * 15 14 13 17 17 O 1.42896 * 109.47157 * 296.00031 * 15 14 13 18 18 C 1.50702 * 109.47088 * 176.00027 * 15 14 13 19 19 O 1.20822 * 119.99832 * 115.00128 * 18 15 14 20 20 O 1.34229 * 120.00163 * 295.00126 * 18 15 14 21 21 C 1.36129 * 109.12283 * 180.21986 * 10 9 7 22 22 C 1.41702 * 107.74540 * 359.62455 * 21 10 9 23 23 C 1.40022 * 133.34689 * 180.15087 * 22 21 10 24 24 C 1.36582 * 119.82924 * 180.26301 * 23 22 21 25 25 C 1.38852 * 120.59964 * 0.02562 * 24 23 22 26 26 C 1.37851 * 120.63536 * 359.97316 * 25 24 23 27 27 C 1.37829 * 125.62189 * 310.37303 * 9 7 2 28 28 H 0.96994 * 120.00067 * 5.00012 * 1 2 3 29 29 H 0.96995 * 120.00169 * 354.76305 * 13 11 10 30 30 H 1.09002 * 109.47074 * 304.91887 * 14 13 11 31 31 H 1.08999 * 109.47164 * 64.91381 * 14 13 11 32 32 H 0.96693 * 114.00462 * 300.00180 * 17 15 14 33 33 H 0.96699 * 116.99747 * 179.97438 * 20 18 15 34 34 H 1.07995 * 126.12700 * 179.72212 * 21 10 9 35 35 H 1.08000 * 120.09093 * 0.24744 * 23 22 21 36 36 H 1.07999 * 119.69880 * 180.02562 * 24 23 22 37 37 H 1.08006 * 119.68725 * 179.97438 * 25 24 23 38 38 H 1.07998 * 120.09468 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3135 0.0000 0.0000 3 14 2.2475 1.6176 0.0000 4 1 3.0064 1.7510 -1.2694 5 1 1.2872 2.7437 0.1234 6 1 3.1914 1.6442 1.1461 7 6 2.0085 -1.2040 -0.0005 8 1 3.0862 -1.2052 0.0687 9 7 1.3268 -2.3878 -0.0887 10 6 1.6105 -3.4164 -0.9673 11 6 2.6938 -3.4148 -1.9593 12 8 2.8001 -4.3374 -2.7453 13 7 3.5699 -2.3915 -1.9986 14 6 4.7131 -2.4407 -2.9136 15 6 5.6102 -1.2246 -2.6747 16 1 5.9107 -1.1949 -1.6273 17 8 4.8924 -0.0322 -2.9983 18 6 6.8356 -1.3254 -3.5461 19 8 7.0229 -0.5138 -4.4213 20 8 7.7189 -2.3169 -3.3500 21 6 0.7220 -4.4288 -0.7704 22 6 -0.1530 -4.0386 0.2736 23 6 -1.2414 -4.6600 0.8981 24 6 -1.9096 -4.0143 1.8991 25 6 -1.5202 -2.7447 2.3046 26 6 -0.4519 -2.1127 1.7050 27 6 0.2447 -2.7505 0.6841 28 1 -0.4850 0.8368 -0.0732 29 1 3.4414 -1.6207 -1.4241 30 1 5.2824 -3.3530 -2.7351 31 1 4.3551 -2.4315 -3.9431 32 1 4.5934 0.0099 -3.9169 33 1 8.4892 -2.3405 -3.9342 34 1 0.6908 -5.3627 -1.3118 35 1 -1.5519 -5.6471 0.5889 36 1 -2.7486 -4.4957 2.3796 37 1 -2.0594 -2.2475 3.0975 38 1 -0.1562 -1.1253 2.0276 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001608190049.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:48:53 Heat of formation + Delta-G solvation = -114.353703 kcal Electronic energy + Delta-G solvation = -26566.854370 eV Core-core repulsion = 22567.883801 eV Total energy + Delta-G solvation = -3998.970569 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.109 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.78447 -40.45961 -38.68306 -37.30115 -36.24235 -35.93240 -34.15820 -33.48515 -30.77664 -30.17039 -28.89862 -27.97448 -25.17452 -24.88750 -22.49966 -21.76194 -20.99659 -20.10978 -19.40566 -18.53760 -18.27601 -17.83746 -16.67470 -16.31413 -15.88508 -15.57343 -15.24792 -15.04253 -14.84259 -14.52995 -14.30800 -13.74729 -13.54711 -13.31651 -13.03553 -12.87788 -12.55313 -12.35069 -12.12838 -11.94423 -11.84999 -11.67614 -11.54743 -11.24089 -11.06644 -10.76812 -10.66015 -10.43569 -10.17408 -9.76300 -9.50459 -9.28235 -8.72656 -8.60122 -7.18878 -6.86968 -6.59572 -4.77921 1.79865 1.82003 2.59025 2.77485 2.94733 2.99485 3.03993 3.10868 3.60951 3.72008 4.11385 4.25130 4.41875 4.54276 4.58300 4.77561 4.93084 5.06523 5.50932 5.59009 5.75346 5.87774 5.97058 6.15278 6.15517 6.41767 6.58703 6.68821 6.77596 6.83997 6.90266 7.10472 7.12709 7.21782 7.46465 7.56375 7.57430 7.65895 7.89773 7.91510 8.11533 8.32099 8.61493 8.86441 9.24467 10.11639 Molecular weight = 318.11amu Principal moments of inertia in cm(-1) A = 0.015148 B = 0.004615 C = 0.003668 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1848.030591 B = 6065.770787 C = 7632.413466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.819 5.819 2 C 0.065 3.935 3 Si 0.919 3.081 4 H -0.252 1.252 5 H -0.277 1.277 6 H -0.265 1.265 7 C -0.378 4.378 8 H 0.105 0.895 9 N -0.264 5.264 10 C -0.018 4.018 11 C 0.600 3.400 12 O -0.557 6.557 13 N -0.726 5.726 14 C 0.095 3.905 15 C 0.108 3.892 16 H 0.146 0.854 17 O -0.521 6.521 18 C 0.458 3.542 19 O -0.507 6.507 20 O -0.509 6.509 21 C -0.162 4.162 22 C -0.136 4.136 23 C -0.088 4.088 24 C -0.159 4.159 25 C -0.149 4.149 26 C -0.049 4.049 27 C 0.111 3.889 28 H 0.284 0.716 29 H 0.421 0.579 30 H 0.089 0.911 31 H 0.071 0.929 32 H 0.388 0.612 33 H 0.411 0.589 34 H 0.132 0.868 35 H 0.104 0.896 36 H 0.102 0.898 37 H 0.105 0.895 38 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.987 -0.607 -1.514 8.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.447 5.447 2 C -0.150 4.150 3 Si 0.742 3.258 4 H -0.176 1.176 5 H -0.202 1.202 6 H -0.189 1.189 7 C -0.505 4.505 8 H 0.122 0.878 9 N 0.072 4.928 10 C -0.133 4.133 11 C 0.390 3.610 12 O -0.436 6.436 13 N -0.388 5.388 14 C -0.030 4.030 15 C 0.046 3.954 16 H 0.164 0.836 17 O -0.326 6.326 18 C 0.299 3.701 19 O -0.394 6.394 20 O -0.321 6.321 21 C -0.190 4.190 22 C -0.140 4.140 23 C -0.107 4.107 24 C -0.178 4.178 25 C -0.169 4.169 26 C -0.069 4.069 27 C -0.003 4.003 28 H 0.095 0.905 29 H 0.268 0.732 30 H 0.107 0.893 31 H 0.090 0.910 32 H 0.237 0.763 33 H 0.271 0.729 34 H 0.150 0.850 35 H 0.122 0.878 36 H 0.120 0.880 37 H 0.123 0.877 38 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 7.956 -0.362 -1.386 8.084 hybrid contribution 0.641 1.172 -0.858 1.588 sum 8.597 0.810 -2.244 8.922 Atomic orbital electron populations 1.69922 1.06349 1.29772 1.38657 1.25731 0.95682 1.00472 0.93110 0.86075 0.79568 0.79493 0.80668 1.17551 1.20176 1.18908 1.19389 0.91896 0.81601 1.57604 0.87780 1.39901 1.21325 1.10864 1.20752 1.20056 1.01585 0.93802 0.97828 1.17254 0.80297 0.81150 0.82311 1.90724 1.74586 1.36921 1.41418 1.46622 1.25460 1.23615 1.43128 1.21761 0.88607 0.96994 0.95685 1.21747 0.86550 0.87313 0.99740 0.83646 1.86757 1.72830 1.38189 1.34873 1.24379 0.84914 0.77766 0.83033 1.90746 1.75642 1.40643 1.32372 1.84570 1.35972 1.50336 1.61237 1.20402 0.97285 0.99502 1.01804 1.18052 0.99560 0.95498 1.00907 1.20052 0.95347 0.98608 0.96713 1.20280 1.01258 0.96247 1.00050 1.20594 0.98594 0.95897 1.01861 1.20118 0.94352 0.98297 0.94100 1.18334 0.93580 0.93019 0.95407 0.90521 0.73153 0.89270 0.91043 0.76253 0.72945 0.84979 0.87786 0.87951 0.87701 0.86372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -19.94 10.46 55.50 0.58 -19.36 16 2 C 0.06 1.47 5.15 -17.47 -0.09 1.38 16 3 Si 0.92 17.44 29.56 -169.99 -5.02 12.41 16 4 H -0.25 -4.74 7.11 56.52 0.40 -4.33 16 5 H -0.28 -5.31 7.11 56.52 0.40 -4.91 16 6 H -0.26 -4.93 7.11 56.52 0.40 -4.53 16 7 C -0.38 -8.73 7.77 -15.00 -0.12 -8.85 16 8 H 0.11 2.21 6.22 -52.49 -0.33 1.89 16 9 N -0.26 -6.41 2.81 -56.08 -0.16 -6.57 16 10 C -0.02 -0.43 6.77 -82.24 -0.56 -0.99 16 11 C 0.60 12.96 7.77 -12.76 -0.10 12.86 16 12 O -0.56 -12.76 16.85 5.22 0.09 -12.67 16 13 N -0.73 -13.07 5.43 -61.55 -0.33 -13.40 16 14 C 0.09 1.31 5.30 -4.04 -0.02 1.29 16 15 C 0.11 1.29 3.55 -27.88 -0.10 1.19 16 16 H 0.15 1.55 8.14 -51.93 -0.42 1.13 16 17 O -0.52 -7.06 12.85 -55.14 -0.71 -7.77 16 18 C 0.46 5.12 7.64 36.01 0.28 5.40 16 19 O -0.51 -7.01 17.08 -25.46 -0.43 -7.44 16 20 O -0.51 -4.32 13.41 -39.26 -0.53 -4.85 16 21 C -0.16 -3.72 10.55 -39.02 -0.41 -4.13 16 22 C -0.14 -3.14 6.16 -106.89 -0.66 -3.80 16 23 C -0.09 -1.79 10.06 -39.51 -0.40 -2.18 16 24 C -0.16 -3.03 9.97 -39.95 -0.40 -3.43 16 25 C -0.15 -2.98 10.02 -39.50 -0.40 -3.38 16 26 C -0.05 -1.12 8.55 -39.41 -0.34 -1.46 16 27 C 0.11 2.72 6.03 -83.84 -0.51 2.22 16 28 H 0.28 6.51 8.31 -40.82 -0.34 6.17 16 29 H 0.42 7.81 4.16 -40.82 -0.17 7.64 16 30 H 0.09 1.19 8.14 -51.93 -0.42 0.76 16 31 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 32 H 0.39 4.31 8.79 45.56 0.40 4.71 16 33 H 0.41 1.69 9.10 45.56 0.41 2.10 16 34 H 0.13 2.79 8.06 -52.49 -0.42 2.36 16 35 H 0.10 1.81 8.06 -52.49 -0.42 1.39 16 36 H 0.10 1.62 8.06 -52.49 -0.42 1.19 16 37 H 0.10 1.80 8.06 -52.48 -0.42 1.38 16 38 H 0.12 2.77 6.81 -52.49 -0.36 2.41 16 LS Contribution 335.11 15.07 5.05 5.05 Total: -1.00 -31.13 335.11 -7.41 -38.54 By element: Atomic # 1 Polarization: 22.06 SS G_CDS: -2.13 Total: 19.93 kcal Atomic # 6 Polarization: -0.06 SS G_CDS: -3.81 Total: -3.88 kcal Atomic # 7 Polarization: -39.42 SS G_CDS: 0.09 Total: -39.34 kcal Atomic # 8 Polarization: -31.14 SS G_CDS: -1.58 Total: -32.73 kcal Atomic # 14 Polarization: 17.44 SS G_CDS: -5.02 Total: 12.41 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -31.13 -7.41 -38.54 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608190049.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.812 kcal (2) G-P(sol) polarization free energy of solvation -31.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.542 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds