Wall clock time and date at job start Tue Mar 31 2020 12:48:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31346 * 1 3 3 Si 1.86794 * 120.00220 * 2 1 4 4 H 1.48499 * 109.47115 * 245.05395 * 3 2 1 5 5 H 1.48500 * 109.46994 * 5.05577 * 3 2 1 6 6 H 1.48498 * 109.47087 * 125.05323 * 3 2 1 7 7 C 1.39023 * 119.99716 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99327 * 184.24241 * 7 2 1 9 9 N 1.36891 * 119.99883 * 4.24029 * 7 2 1 10 10 C 1.38213 * 125.61180 * 130.39061 * 9 7 2 11 11 C 1.46889 * 125.44111 * 359.96063 * 10 9 7 12 12 O 1.21663 * 119.99742 * 184.90771 * 11 10 9 13 13 N 1.34772 * 119.99702 * 4.91289 * 11 10 9 14 14 C 1.46505 * 119.99830 * 175.04385 * 13 11 10 15 15 C 1.52995 * 109.47108 * 184.91390 * 14 13 11 16 16 H 1.09002 * 109.47233 * 56.00529 * 15 14 13 17 17 O 1.42896 * 109.47157 * 296.00031 * 15 14 13 18 18 C 1.50702 * 109.47088 * 176.00027 * 15 14 13 19 19 O 1.20822 * 119.99832 * 115.00128 * 18 15 14 20 20 O 1.34229 * 120.00163 * 295.00126 * 18 15 14 21 21 C 1.36129 * 109.12283 * 180.21986 * 10 9 7 22 22 C 1.41702 * 107.74540 * 359.62455 * 21 10 9 23 23 C 1.40022 * 133.34689 * 180.15087 * 22 21 10 24 24 C 1.36582 * 119.82924 * 180.26301 * 23 22 21 25 25 C 1.38852 * 120.59964 * 0.02562 * 24 23 22 26 26 C 1.37851 * 120.63536 * 359.97316 * 25 24 23 27 27 C 1.37829 * 125.62189 * 310.37303 * 9 7 2 28 28 H 0.96994 * 120.00067 * 5.00012 * 1 2 3 29 29 H 0.96995 * 120.00169 * 354.76305 * 13 11 10 30 30 H 1.09002 * 109.47074 * 304.91887 * 14 13 11 31 31 H 1.08999 * 109.47164 * 64.91381 * 14 13 11 32 32 H 0.96693 * 114.00462 * 300.00180 * 17 15 14 33 33 H 0.96699 * 116.99747 * 179.97438 * 20 18 15 34 34 H 1.07995 * 126.12700 * 179.72212 * 21 10 9 35 35 H 1.08000 * 120.09093 * 0.24744 * 23 22 21 36 36 H 1.07999 * 119.69880 * 180.02562 * 24 23 22 37 37 H 1.08006 * 119.68725 * 179.97438 * 25 24 23 38 38 H 1.07998 * 120.09468 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3135 0.0000 0.0000 3 14 2.2475 1.6176 0.0000 4 1 3.0064 1.7510 -1.2694 5 1 1.2872 2.7437 0.1234 6 1 3.1914 1.6442 1.1461 7 6 2.0085 -1.2040 -0.0005 8 1 3.0862 -1.2052 0.0687 9 7 1.3268 -2.3878 -0.0887 10 6 1.6105 -3.4164 -0.9673 11 6 2.6938 -3.4148 -1.9593 12 8 2.8001 -4.3374 -2.7453 13 7 3.5699 -2.3915 -1.9986 14 6 4.7131 -2.4407 -2.9136 15 6 5.6102 -1.2246 -2.6747 16 1 5.9107 -1.1949 -1.6273 17 8 4.8924 -0.0322 -2.9983 18 6 6.8356 -1.3254 -3.5461 19 8 7.0229 -0.5138 -4.4213 20 8 7.7189 -2.3169 -3.3500 21 6 0.7220 -4.4288 -0.7704 22 6 -0.1530 -4.0386 0.2736 23 6 -1.2414 -4.6600 0.8981 24 6 -1.9096 -4.0143 1.8991 25 6 -1.5202 -2.7447 2.3046 26 6 -0.4519 -2.1127 1.7050 27 6 0.2447 -2.7505 0.6841 28 1 -0.4850 0.8368 -0.0732 29 1 3.4414 -1.6207 -1.4241 30 1 5.2824 -3.3530 -2.7351 31 1 4.3551 -2.4315 -3.9431 32 1 4.5934 0.0099 -3.9169 33 1 8.4892 -2.3405 -3.9342 34 1 0.6908 -5.3627 -1.3118 35 1 -1.5519 -5.6471 0.5889 36 1 -2.7486 -4.4957 2.3796 37 1 -2.0594 -2.2475 3.0975 38 1 -0.1562 -1.1253 2.0276 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001608190049.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:48:52 Heat of formation + Delta-G solvation = -136.651314 kcal Electronic energy + Delta-G solvation = -26567.821267 eV Core-core repulsion = 22567.883801 eV Total energy + Delta-G solvation = -3999.937466 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.109 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.21865 -41.62781 -40.21832 -38.34305 -37.57512 -37.15245 -35.64627 -35.10589 -32.47411 -31.45124 -30.49284 -29.55846 -26.83731 -26.21273 -23.96305 -22.75036 -22.64782 -21.71667 -21.02457 -19.94408 -19.41914 -18.82963 -18.20393 -17.41571 -17.35867 -16.95737 -16.51896 -16.42909 -16.34319 -16.06696 -15.70947 -15.20241 -14.92845 -14.70153 -14.52556 -14.44713 -14.19276 -13.62345 -13.55588 -13.35229 -13.20795 -13.10156 -12.68934 -12.66529 -12.30611 -12.20274 -12.18074 -11.82760 -11.50976 -11.40320 -11.10773 -10.97172 -10.34903 -10.16236 -8.89724 -8.58852 -8.29540 -6.55435 0.14060 0.90053 1.15013 1.39963 1.41262 1.49237 1.53892 1.71647 2.12160 2.32161 2.53190 2.82561 2.86955 3.12823 3.37838 3.39098 3.81896 4.01164 4.16335 4.26412 4.46325 4.49958 4.54687 4.58868 4.77965 4.90291 5.04311 5.08698 5.23137 5.36383 5.40794 5.43876 5.48550 5.78616 5.93740 6.00466 6.22916 6.26258 6.33775 6.52407 6.61078 6.83824 6.91318 7.22546 7.51259 8.40606 Molecular weight = 318.11amu Principal moments of inertia in cm(-1) A = 0.015148 B = 0.004615 C = 0.003668 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1848.030591 B = 6065.770787 C = 7632.413466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.853 5.853 2 C 0.029 3.971 3 Si 0.983 3.017 4 H -0.246 1.246 5 H -0.281 1.281 6 H -0.256 1.256 7 C -0.392 4.392 8 H 0.117 0.883 9 N -0.277 5.277 10 C -0.042 4.042 11 C 0.597 3.403 12 O -0.578 6.578 13 N -0.716 5.716 14 C 0.094 3.906 15 C 0.114 3.886 16 H 0.160 0.840 17 O -0.538 6.538 18 C 0.473 3.527 19 O -0.534 6.534 20 O -0.501 6.501 21 C -0.175 4.175 22 C -0.157 4.157 23 C -0.094 4.094 24 C -0.153 4.153 25 C -0.139 4.139 26 C -0.078 4.078 27 C 0.080 3.920 28 H 0.284 0.716 29 H 0.420 0.580 30 H 0.099 0.901 31 H 0.074 0.926 32 H 0.396 0.604 33 H 0.433 0.567 34 H 0.143 0.857 35 H 0.133 0.867 36 H 0.145 0.855 37 H 0.135 0.865 38 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.425 -0.704 -0.998 8.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.482 5.482 2 C -0.182 4.182 3 Si 0.803 3.197 4 H -0.170 1.170 5 H -0.206 1.206 6 H -0.180 1.180 7 C -0.518 4.518 8 H 0.134 0.866 9 N 0.058 4.942 10 C -0.157 4.157 11 C 0.386 3.614 12 O -0.459 6.459 13 N -0.376 5.376 14 C -0.030 4.030 15 C 0.052 3.948 16 H 0.177 0.823 17 O -0.345 6.345 18 C 0.314 3.686 19 O -0.424 6.424 20 O -0.315 6.315 21 C -0.203 4.203 22 C -0.161 4.161 23 C -0.113 4.113 24 C -0.172 4.172 25 C -0.160 4.160 26 C -0.098 4.098 27 C -0.034 4.034 28 H 0.094 0.906 29 H 0.266 0.734 30 H 0.117 0.883 31 H 0.093 0.907 32 H 0.247 0.753 33 H 0.296 0.704 34 H 0.161 0.839 35 H 0.151 0.849 36 H 0.162 0.838 37 H 0.153 0.847 38 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 8.439 -0.473 -0.874 8.497 hybrid contribution 0.476 1.105 -0.967 1.544 sum 8.915 0.633 -1.841 9.125 Atomic orbital electron populations 1.70039 1.07824 1.30354 1.39949 1.26543 0.96204 1.03173 0.92283 0.85127 0.78276 0.75369 0.80934 1.16993 1.20560 1.18030 1.19799 0.92622 0.81732 1.57663 0.86597 1.40107 1.21679 1.11302 1.21115 1.20477 1.02637 0.94017 0.98543 1.17145 0.80581 0.81748 0.81950 1.90694 1.75249 1.37837 1.42138 1.46523 1.25667 1.22257 1.43154 1.21952 0.87610 0.98596 0.94867 1.21702 0.86421 0.85831 1.00802 0.82262 1.86721 1.73246 1.38763 1.35797 1.23986 0.84856 0.77675 0.82058 1.90748 1.76373 1.41869 1.33424 1.84518 1.36498 1.48868 1.61638 1.20649 0.97535 0.99954 1.02157 1.18437 1.00738 0.95543 1.01406 1.20465 0.94347 0.99857 0.96583 1.20735 1.01707 0.95585 0.99167 1.21020 0.97167 0.96276 1.01508 1.20176 0.96145 0.98237 0.95194 1.18794 0.94259 0.94057 0.96286 0.90621 0.73374 0.88293 0.90739 0.75314 0.70435 0.83930 0.84908 0.83753 0.84723 0.87950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -42.47 10.46 21.67 0.23 -42.24 16 2 C 0.03 1.33 5.15 84.95 0.44 1.76 16 3 Si 0.98 35.72 29.56 68.60 2.03 37.75 16 4 H -0.25 -8.69 7.11 99.48 0.71 -7.98 16 5 H -0.28 -10.27 7.11 99.48 0.71 -9.56 16 6 H -0.26 -8.89 7.11 99.48 0.71 -8.19 16 7 C -0.39 -18.39 7.77 84.09 0.65 -17.73 16 8 H 0.12 4.95 6.22 -2.91 -0.02 4.94 16 9 N -0.28 -13.81 2.81 -331.34 -0.93 -14.73 16 10 C -0.04 -2.04 6.77 39.91 0.27 -1.77 16 11 C 0.60 26.10 7.77 86.51 0.67 26.78 16 12 O -0.58 -26.69 16.85 -4.23 -0.07 -26.76 16 13 N -0.72 -25.66 5.43 -466.89 -2.54 -28.19 16 14 C 0.09 2.50 5.30 86.38 0.46 2.96 16 15 C 0.11 2.53 3.55 29.85 0.11 2.64 16 16 H 0.16 3.08 8.14 -2.39 -0.02 3.06 16 17 O -0.54 -13.91 12.85 -129.95 -1.67 -15.58 16 18 C 0.47 9.67 7.64 71.24 0.54 10.21 16 19 O -0.53 -13.98 17.08 28.39 0.49 -13.49 16 20 O -0.50 -7.22 13.41 -51.41 -0.69 -7.91 16 21 C -0.17 -8.18 10.55 22.63 0.24 -7.94 16 22 C -0.16 -7.30 6.16 -21.33 -0.13 -7.43 16 23 C -0.09 -3.64 10.06 22.32 0.22 -3.41 16 24 C -0.15 -5.40 9.97 22.03 0.22 -5.18 16 25 C -0.14 -5.36 10.02 22.32 0.22 -5.14 16 26 C -0.08 -3.60 8.55 22.38 0.19 -3.41 16 27 C 0.08 4.01 6.03 39.06 0.24 4.25 16 28 H 0.28 13.31 8.31 -92.71 -0.77 12.54 16 29 H 0.42 15.51 4.16 -92.71 -0.39 15.12 16 30 H 0.10 2.49 8.14 -2.39 -0.02 2.47 16 31 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 32 H 0.40 8.47 8.79 -74.06 -0.65 7.82 16 33 H 0.43 2.36 9.10 -74.06 -0.67 1.68 16 34 H 0.14 6.12 8.06 -2.91 -0.02 6.10 16 35 H 0.13 4.28 8.06 -2.91 -0.02 4.26 16 36 H 0.14 3.87 8.06 -2.91 -0.02 3.85 16 37 H 0.13 4.27 8.06 -2.91 -0.02 4.24 16 38 H 0.10 4.96 6.81 -2.91 -0.02 4.94 16 Total: -1.00 -67.99 335.11 0.64 -67.35 By element: Atomic # 1 Polarization: 47.79 SS G_CDS: -0.55 Total: 47.24 kcal Atomic # 6 Polarization: -7.76 SS G_CDS: 4.34 Total: -3.42 kcal Atomic # 7 Polarization: -81.93 SS G_CDS: -3.24 Total: -85.17 kcal Atomic # 8 Polarization: -61.80 SS G_CDS: -1.95 Total: -63.75 kcal Atomic # 14 Polarization: 35.72 SS G_CDS: 2.03 Total: 37.75 kcal Total: -67.99 0.64 -67.35 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608190049.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.299 kcal (2) G-P(sol) polarization free energy of solvation -67.989 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.352 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds