Wall clock time and date at job start Tue Mar 31 2020 12:48:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31348 * 1 3 3 Si 1.86799 * 120.00207 * 2 1 4 4 H 1.48501 * 109.47347 * 4.99147 * 3 2 1 5 5 H 1.48501 * 109.46937 * 124.99239 * 3 2 1 6 6 H 1.48504 * 109.47227 * 244.99103 * 3 2 1 7 7 C 1.39019 * 119.99904 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99795 * 159.89047 * 7 2 1 9 9 N 1.36887 * 119.99785 * 339.89345 * 7 2 1 10 10 C 1.38211 * 125.62018 * 132.71946 * 9 7 2 11 11 C 1.46886 * 125.43507 * 359.97438 * 10 9 7 12 12 O 1.21672 * 120.00281 * 173.70052 * 11 10 9 13 13 N 1.34784 * 120.00199 * 353.69809 * 11 10 9 14 14 C 1.46492 * 120.00052 * 185.84060 * 13 11 10 15 15 H 1.09005 * 109.47421 * 324.16160 * 14 13 11 16 16 C 1.53001 * 109.47247 * 84.16437 * 14 13 11 17 17 O 1.42894 * 109.47486 * 64.99682 * 16 14 13 18 18 C 1.50698 * 109.47419 * 204.16200 * 14 13 11 19 19 O 1.20834 * 119.99625 * 335.16908 * 18 14 13 20 20 O 1.34225 * 120.00306 * 155.16950 * 18 14 13 21 21 C 1.36120 * 109.12906 * 179.82256 * 10 9 7 22 22 C 1.41701 * 107.74878 * 0.43717 * 21 10 9 23 23 C 1.40022 * 133.35192 * 179.78100 * 22 21 10 24 24 C 1.36579 * 119.82626 * 179.97438 * 23 22 21 25 25 C 1.38852 * 120.60432 * 359.95707 * 24 23 22 26 26 C 1.37843 * 120.63301 * 0.02562 * 25 24 23 27 27 C 1.37839 * 125.62404 * 313.02765 * 9 7 2 28 28 H 0.97001 * 120.00216 * 175.17254 * 1 2 3 29 29 H 0.96993 * 119.99602 * 5.84126 * 13 11 10 30 30 H 1.08994 * 109.47464 * 185.00061 * 16 14 13 31 31 H 1.09007 * 109.46952 * 304.99727 * 16 14 13 32 32 H 0.96693 * 114.00492 * 180.02562 * 17 16 14 33 33 H 0.96706 * 116.99808 * 179.97438 * 20 18 14 34 34 H 1.08006 * 126.12990 * 180.16996 * 21 10 9 35 35 H 1.07991 * 120.08444 * 359.97438 * 23 22 21 36 36 H 1.08008 * 119.69676 * 179.97438 * 24 23 22 37 37 H 1.08000 * 119.68106 * 180.02562 * 25 24 23 38 38 H 1.08002 * 120.09535 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3135 0.0000 0.0000 3 14 2.2475 1.6177 0.0000 4 1 1.2872 2.7438 0.1218 5 1 3.1904 1.6448 1.1470 6 1 3.0077 1.7504 -1.2688 7 6 2.0085 -1.2039 -0.0005 8 1 3.0392 -1.2323 -0.3221 9 7 1.3866 -2.3534 0.4065 10 6 1.4151 -3.5636 -0.2605 11 6 2.1188 -3.8236 -1.5234 12 8 2.1744 -4.9552 -1.9671 13 7 2.7029 -2.8087 -2.1908 14 6 3.2931 -3.0436 -3.5108 15 1 3.7431 -4.0362 -3.5362 16 6 2.2034 -2.9501 -4.5807 17 8 1.6940 -1.6158 -4.6265 18 6 4.3516 -2.0053 -3.7799 19 8 4.3032 -0.9346 -3.2219 20 8 5.3481 -2.2697 -4.6393 21 6 0.6898 -4.4770 0.4413 22 6 0.1723 -3.8275 1.5895 23 6 -0.6325 -4.2526 2.6535 24 6 -0.9747 -3.3725 3.6403 25 6 -0.5308 -2.0575 3.5997 26 6 0.2627 -1.6157 2.5628 27 6 0.6238 -2.4933 1.5460 28 1 -0.4850 -0.8371 -0.0707 29 1 2.7324 -1.9228 -1.7970 30 1 2.6240 -3.2119 -5.5516 31 1 1.3950 -3.6395 -4.3372 32 1 0.9975 -1.4830 -5.2839 33 1 6.0034 -1.5725 -4.7798 34 1 0.5328 -5.5104 0.1694 35 1 -0.9818 -5.2737 2.6937 36 1 -1.5959 -3.7026 4.4598 37 1 -0.8100 -1.3743 4.3882 38 1 0.6027 -0.5909 2.5398 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001610624284.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:48:56 Heat of formation + Delta-G solvation = -113.938761 kcal Electronic energy + Delta-G solvation = -27219.017091 eV Core-core repulsion = 23220.064515 eV Total energy + Delta-G solvation = -3998.952576 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.109 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.84014 -40.32659 -38.67881 -36.84512 -36.13867 -36.08230 -34.25911 -33.58344 -30.73304 -30.16299 -28.84400 -27.89731 -24.79172 -24.72688 -23.32198 -21.16063 -20.93380 -19.98565 -19.65760 -18.69805 -18.05372 -17.43833 -16.88115 -16.30284 -15.82714 -15.68603 -15.24688 -14.91425 -14.87584 -14.30465 -14.16576 -13.93704 -13.56651 -13.29130 -13.18936 -13.06546 -12.57735 -12.52844 -12.13537 -11.91309 -11.76045 -11.47010 -11.11086 -10.93021 -10.56261 -10.52121 -10.37877 -10.31952 -10.05384 -9.92210 -9.63579 -9.14150 -8.87460 -8.78680 -7.52244 -7.09659 -6.77814 -4.71918 1.63993 2.20936 2.58110 2.73588 2.90799 3.16199 3.20037 3.35886 3.68090 3.89785 4.08045 4.22751 4.34213 4.68665 4.85611 4.98578 5.09159 5.22920 5.31331 5.58267 5.62048 5.74562 5.79608 6.00600 6.25170 6.36099 6.44985 6.50392 6.70621 6.73298 6.85838 6.92432 7.25967 7.34781 7.43150 7.59888 7.61731 7.71562 7.79899 7.88370 8.06285 8.19846 8.62120 8.75910 9.08053 10.10733 Molecular weight = 318.11amu Principal moments of inertia in cm(-1) A = 0.013617 B = 0.005682 C = 0.004415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2055.722995 B = 4926.792747 C = 6341.068332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.816 5.816 2 C 0.040 3.960 3 Si 1.070 2.930 4 H -0.272 1.272 5 H -0.276 1.276 6 H -0.268 1.268 7 C -0.454 4.454 8 H 0.102 0.898 9 N -0.263 5.263 10 C -0.021 4.021 11 C 0.602 3.398 12 O -0.558 6.558 13 N -0.709 5.709 14 C 0.157 3.843 15 H 0.131 0.869 16 C 0.070 3.930 17 O -0.558 6.558 18 C 0.479 3.521 19 O -0.485 6.485 20 O -0.517 6.517 21 C -0.163 4.163 22 C -0.129 4.129 23 C -0.081 4.081 24 C -0.159 4.159 25 C -0.134 4.134 26 C -0.080 4.080 27 C 0.074 3.926 28 H 0.288 0.712 29 H 0.430 0.570 30 H 0.062 0.938 31 H 0.069 0.931 32 H 0.380 0.620 33 H 0.411 0.589 34 H 0.135 0.865 35 H 0.108 0.892 36 H 0.107 0.893 37 H 0.110 0.890 38 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.125 -2.308 -6.018 7.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.441 5.441 2 C -0.178 4.178 3 Si 0.892 3.108 4 H -0.196 1.196 5 H -0.201 1.201 6 H -0.193 1.193 7 C -0.580 4.580 8 H 0.119 0.881 9 N 0.073 4.927 10 C -0.136 4.136 11 C 0.393 3.607 12 O -0.437 6.437 13 N -0.373 5.373 14 C 0.050 3.950 15 H 0.148 0.852 16 C -0.009 4.009 17 O -0.364 6.364 18 C 0.318 3.682 19 O -0.369 6.369 20 O -0.329 6.329 21 C -0.190 4.190 22 C -0.134 4.134 23 C -0.099 4.099 24 C -0.178 4.178 25 C -0.154 4.154 26 C -0.100 4.100 27 C -0.040 4.040 28 H 0.100 0.900 29 H 0.280 0.720 30 H 0.080 0.920 31 H 0.088 0.912 32 H 0.227 0.773 33 H 0.270 0.730 34 H 0.153 0.847 35 H 0.126 0.874 36 H 0.125 0.875 37 H 0.128 0.872 38 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 4.267 -1.012 -5.767 7.245 hybrid contribution 0.197 -0.898 -0.540 1.066 sum 4.464 -1.909 -6.307 7.959 Atomic orbital electron populations 1.70622 1.07076 1.32858 1.33593 1.26808 0.95961 1.02904 0.92126 0.83501 0.75394 0.73502 0.78392 1.19633 1.20129 1.19322 1.20420 0.98566 0.85809 1.53232 0.88083 1.40145 1.33073 1.07016 1.12453 1.20102 1.08268 0.89418 0.95765 1.17249 0.77090 0.83678 0.82704 1.90721 1.61651 1.21889 1.69489 1.46620 1.57952 1.16035 1.16708 1.20329 0.90456 0.98080 0.86176 0.85197 1.22507 0.96109 0.85604 0.96690 1.86640 1.58438 1.27919 1.63353 1.23174 0.80956 0.88026 0.75996 1.90781 1.73892 1.24940 1.47317 1.84489 1.37566 1.50027 1.60822 1.20399 1.03758 0.98576 0.96317 1.18008 1.04173 0.93526 0.97663 1.20123 0.97959 0.98462 0.93401 1.20336 1.03785 0.94131 0.99562 1.20605 1.00413 0.95865 0.98564 1.20125 0.98812 0.98409 0.92675 1.18496 1.01081 0.94688 0.89752 0.89979 0.71961 0.91998 0.91244 0.77254 0.73038 0.84717 0.87405 0.87506 0.87165 0.86624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -21.57 12.61 55.50 0.70 -20.87 16 2 C 0.04 0.99 4.38 -17.47 -0.08 0.91 16 3 Si 1.07 22.27 29.97 -169.99 -5.09 17.17 16 4 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 5 H -0.28 -5.47 7.11 56.52 0.40 -5.07 16 6 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 7 C -0.45 -11.42 7.52 -15.01 -0.11 -11.53 16 8 H 0.10 2.53 6.56 -52.49 -0.34 2.19 16 9 N -0.26 -6.61 2.46 -56.08 -0.14 -6.74 16 10 C -0.02 -0.51 6.76 -82.25 -0.56 -1.06 16 11 C 0.60 13.47 7.72 -12.76 -0.10 13.38 16 12 O -0.56 -12.55 16.49 5.21 0.09 -12.46 16 13 N -0.71 -14.55 4.95 -56.18 -0.28 -14.83 16 14 C 0.16 2.57 2.91 -69.09 -0.20 2.37 16 15 H 0.13 1.93 7.53 -51.93 -0.39 1.54 16 16 C 0.07 0.99 6.83 37.16 0.25 1.24 16 17 O -0.56 -8.63 13.09 -35.23 -0.46 -9.09 16 18 C 0.48 7.53 7.06 36.00 0.25 7.78 16 19 O -0.48 -9.38 16.75 -18.76 -0.31 -9.70 16 20 O -0.52 -5.82 13.42 -39.24 -0.53 -6.35 16 21 C -0.16 -3.72 10.55 -39.02 -0.41 -4.13 16 22 C -0.13 -2.95 6.16 -106.89 -0.66 -3.61 16 23 C -0.08 -1.59 10.06 -39.51 -0.40 -1.98 16 24 C -0.16 -2.93 9.97 -39.95 -0.40 -3.33 16 25 C -0.13 -2.63 10.02 -39.50 -0.40 -3.03 16 26 C -0.08 -1.84 8.98 -39.41 -0.35 -2.19 16 27 C 0.07 1.82 5.52 -83.83 -0.46 1.35 16 28 H 0.29 8.03 7.35 -40.82 -0.30 7.73 16 29 H 0.43 9.73 3.65 -40.82 -0.15 9.58 16 30 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 32 H 0.38 3.93 9.12 45.56 0.42 4.35 16 33 H 0.41 2.81 9.10 45.56 0.41 3.22 16 34 H 0.14 2.80 8.06 -52.48 -0.42 2.37 16 35 H 0.11 1.81 8.06 -52.49 -0.42 1.38 16 36 H 0.11 1.62 8.06 -52.48 -0.42 1.19 16 37 H 0.11 1.84 8.06 -52.49 -0.42 1.42 16 38 H 0.12 2.72 7.26 -52.49 -0.38 2.34 16 LS Contribution 334.59 15.07 5.04 5.04 Total: -1.00 -32.30 334.59 -6.67 -38.97 By element: Atomic # 1 Polarization: 24.76 SS G_CDS: -2.07 Total: 22.69 kcal Atomic # 6 Polarization: -0.22 SS G_CDS: -3.62 Total: -3.84 kcal Atomic # 7 Polarization: -42.72 SS G_CDS: 0.28 Total: -42.44 kcal Atomic # 8 Polarization: -36.38 SS G_CDS: -1.22 Total: -37.60 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -5.09 Total: 17.17 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -32.30 -6.67 -38.97 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001610624284.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.970 kcal (2) G-P(sol) polarization free energy of solvation -32.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.968 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds