Wall clock time and date at job start Tue Mar 31 2020 12:48:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31348 * 1 3 3 Si 1.86799 * 120.00207 * 2 1 4 4 H 1.48501 * 109.47347 * 4.99147 * 3 2 1 5 5 H 1.48501 * 109.46937 * 124.99239 * 3 2 1 6 6 H 1.48504 * 109.47227 * 244.99103 * 3 2 1 7 7 C 1.39019 * 119.99904 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99795 * 159.89047 * 7 2 1 9 9 N 1.36887 * 119.99785 * 339.89345 * 7 2 1 10 10 C 1.38211 * 125.62018 * 132.71946 * 9 7 2 11 11 C 1.46886 * 125.43507 * 359.97438 * 10 9 7 12 12 O 1.21672 * 120.00281 * 173.70052 * 11 10 9 13 13 N 1.34784 * 120.00199 * 353.69809 * 11 10 9 14 14 C 1.46492 * 120.00052 * 185.84060 * 13 11 10 15 15 H 1.09005 * 109.47421 * 324.16160 * 14 13 11 16 16 C 1.53001 * 109.47247 * 84.16437 * 14 13 11 17 17 O 1.42894 * 109.47486 * 64.99682 * 16 14 13 18 18 C 1.50698 * 109.47419 * 204.16200 * 14 13 11 19 19 O 1.20834 * 119.99625 * 335.16908 * 18 14 13 20 20 O 1.34225 * 120.00306 * 155.16950 * 18 14 13 21 21 C 1.36120 * 109.12906 * 179.82256 * 10 9 7 22 22 C 1.41701 * 107.74878 * 0.43717 * 21 10 9 23 23 C 1.40022 * 133.35192 * 179.78100 * 22 21 10 24 24 C 1.36579 * 119.82626 * 179.97438 * 23 22 21 25 25 C 1.38852 * 120.60432 * 359.95707 * 24 23 22 26 26 C 1.37843 * 120.63301 * 0.02562 * 25 24 23 27 27 C 1.37839 * 125.62404 * 313.02765 * 9 7 2 28 28 H 0.97001 * 120.00216 * 175.17254 * 1 2 3 29 29 H 0.96993 * 119.99602 * 5.84126 * 13 11 10 30 30 H 1.08994 * 109.47464 * 185.00061 * 16 14 13 31 31 H 1.09007 * 109.46952 * 304.99727 * 16 14 13 32 32 H 0.96693 * 114.00492 * 180.02562 * 17 16 14 33 33 H 0.96706 * 116.99808 * 179.97438 * 20 18 14 34 34 H 1.08006 * 126.12990 * 180.16996 * 21 10 9 35 35 H 1.07991 * 120.08444 * 359.97438 * 23 22 21 36 36 H 1.08008 * 119.69676 * 179.97438 * 24 23 22 37 37 H 1.08000 * 119.68106 * 180.02562 * 25 24 23 38 38 H 1.08002 * 120.09535 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3135 0.0000 0.0000 3 14 2.2475 1.6177 0.0000 4 1 1.2872 2.7438 0.1218 5 1 3.1904 1.6448 1.1470 6 1 3.0077 1.7504 -1.2688 7 6 2.0085 -1.2039 -0.0005 8 1 3.0392 -1.2323 -0.3221 9 7 1.3866 -2.3534 0.4065 10 6 1.4151 -3.5636 -0.2605 11 6 2.1188 -3.8236 -1.5234 12 8 2.1744 -4.9552 -1.9671 13 7 2.7029 -2.8087 -2.1908 14 6 3.2931 -3.0436 -3.5108 15 1 3.7431 -4.0362 -3.5362 16 6 2.2034 -2.9501 -4.5807 17 8 1.6940 -1.6158 -4.6265 18 6 4.3516 -2.0053 -3.7799 19 8 4.3032 -0.9346 -3.2219 20 8 5.3481 -2.2697 -4.6393 21 6 0.6898 -4.4770 0.4413 22 6 0.1723 -3.8275 1.5895 23 6 -0.6325 -4.2526 2.6535 24 6 -0.9747 -3.3725 3.6403 25 6 -0.5308 -2.0575 3.5997 26 6 0.2627 -1.6157 2.5628 27 6 0.6238 -2.4933 1.5460 28 1 -0.4850 -0.8371 -0.0707 29 1 2.7324 -1.9228 -1.7970 30 1 2.6240 -3.2119 -5.5516 31 1 1.3950 -3.6395 -4.3372 32 1 0.9975 -1.4830 -5.2839 33 1 6.0034 -1.5725 -4.7798 34 1 0.5328 -5.5104 0.1694 35 1 -0.9818 -5.2737 2.6937 36 1 -1.5959 -3.7026 4.4598 37 1 -0.8100 -1.3743 4.3882 38 1 0.6027 -0.5909 2.5398 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001610624284.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:48:55 Heat of formation + Delta-G solvation = -138.496298 kcal Electronic energy + Delta-G solvation = -27220.081986 eV Core-core repulsion = 23220.064515 eV Total energy + Delta-G solvation = -4000.017470 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.109 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.49929 -41.66400 -40.24404 -38.07322 -37.78103 -37.24895 -35.84906 -35.29608 -32.47652 -31.62215 -30.49141 -29.52341 -26.63986 -25.95038 -24.86676 -22.81140 -22.41319 -21.51527 -21.30271 -20.39006 -19.37043 -18.64955 -18.27079 -17.81627 -17.47982 -17.12006 -16.61261 -16.58724 -16.41280 -15.83706 -15.66387 -15.53345 -15.03133 -14.86505 -14.76147 -14.52883 -14.23177 -13.98521 -13.69663 -13.52269 -13.02377 -12.80571 -12.65778 -12.47597 -12.18379 -12.14231 -11.98528 -11.82479 -11.57703 -11.43198 -11.09623 -10.96572 -10.59266 -10.36000 -9.38234 -8.87081 -8.53032 -6.64231 -0.04712 0.94691 0.97043 1.20202 1.44978 1.50215 1.55267 1.71464 2.15910 2.24501 2.37847 2.58865 2.86809 3.11571 3.18181 3.78034 3.80023 4.03494 4.07439 4.20120 4.30465 4.32218 4.42018 4.47395 4.61394 4.69059 4.84825 5.04524 5.14628 5.19224 5.26630 5.40933 5.44273 5.69342 5.73184 5.81832 6.01586 6.06322 6.36533 6.43600 6.72375 6.79251 6.84621 7.03602 7.25410 8.13595 Molecular weight = 318.11amu Principal moments of inertia in cm(-1) A = 0.013617 B = 0.005682 C = 0.004415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2055.722995 B = 4926.792747 C = 6341.068332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.838 5.838 2 C 0.011 3.989 3 Si 1.111 2.889 4 H -0.268 1.268 5 H -0.261 1.261 6 H -0.268 1.268 7 C -0.460 4.460 8 H 0.093 0.907 9 N -0.284 5.284 10 C -0.050 4.050 11 C 0.600 3.400 12 O -0.566 6.566 13 N -0.711 5.711 14 C 0.142 3.858 15 H 0.146 0.854 16 C 0.074 3.926 17 O -0.586 6.586 18 C 0.490 3.510 19 O -0.528 6.528 20 O -0.496 6.496 21 C -0.164 4.164 22 C -0.149 4.149 23 C -0.080 4.080 24 C -0.152 4.152 25 C -0.117 4.117 26 C -0.117 4.117 27 C 0.051 3.949 28 H 0.269 0.731 29 H 0.421 0.579 30 H 0.106 0.894 31 H 0.060 0.940 32 H 0.400 0.600 33 H 0.433 0.567 34 H 0.152 0.848 35 H 0.142 0.858 36 H 0.153 0.847 37 H 0.143 0.857 38 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.985 -3.109 -5.604 7.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.464 5.464 2 C -0.201 4.201 3 Si 0.928 3.072 4 H -0.193 1.193 5 H -0.186 1.186 6 H -0.193 1.193 7 C -0.586 4.586 8 H 0.110 0.890 9 N 0.050 4.950 10 C -0.163 4.163 11 C 0.389 3.611 12 O -0.447 6.447 13 N -0.372 5.372 14 C 0.036 3.964 15 H 0.163 0.837 16 C -0.004 4.004 17 O -0.395 6.395 18 C 0.332 3.668 19 O -0.416 6.416 20 O -0.310 6.310 21 C -0.192 4.192 22 C -0.153 4.153 23 C -0.099 4.099 24 C -0.170 4.170 25 C -0.137 4.137 26 C -0.137 4.137 27 C -0.062 4.062 28 H 0.079 0.921 29 H 0.268 0.732 30 H 0.124 0.876 31 H 0.078 0.922 32 H 0.250 0.750 33 H 0.296 0.704 34 H 0.170 0.830 35 H 0.160 0.840 36 H 0.171 0.829 37 H 0.161 0.839 38 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 4.155 -1.832 -5.399 7.055 hybrid contribution 0.238 -0.788 -0.635 1.039 sum 4.393 -2.620 -6.034 7.910 Atomic orbital electron populations 1.70729 1.07745 1.31350 1.36571 1.27923 0.95933 1.05315 0.90962 0.83010 0.74722 0.70643 0.78787 1.19265 1.18551 1.19299 1.20423 0.98219 0.86407 1.53593 0.88987 1.40239 1.34274 1.07168 1.13275 1.20576 1.09254 0.89588 0.96920 1.17142 0.77360 0.83984 0.82566 1.90687 1.62359 1.21951 1.69716 1.46568 1.57489 1.14929 1.18193 1.20747 0.91743 0.99097 0.84852 0.83700 1.22537 0.95254 0.84876 0.97777 1.86591 1.59509 1.28694 1.64685 1.22959 0.81213 0.86929 0.75745 1.90773 1.75067 1.26540 1.49217 1.84426 1.36897 1.50711 1.58966 1.20707 1.03130 0.99137 0.96188 1.18409 1.05157 0.92979 0.98783 1.20579 0.96576 1.00439 0.92275 1.20841 1.02996 0.93049 1.00139 1.21089 0.97799 0.97173 0.97620 1.20207 1.01492 0.97759 0.94251 1.18975 1.01158 0.96010 0.90103 0.92096 0.73152 0.87628 0.92210 0.74978 0.70398 0.83027 0.84020 0.82897 0.83928 0.88468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -46.05 12.61 21.67 0.27 -45.77 16 2 C 0.01 0.55 4.38 84.95 0.37 0.92 16 3 Si 1.11 46.17 29.97 68.60 2.06 48.23 16 4 H -0.27 -10.89 7.11 99.48 0.71 -10.18 16 5 H -0.26 -10.10 7.11 99.48 0.71 -9.39 16 6 H -0.27 -11.06 7.11 99.48 0.71 -10.35 16 7 C -0.46 -24.21 7.52 84.09 0.63 -23.58 16 8 H 0.09 4.87 6.56 -2.91 -0.02 4.85 16 9 N -0.28 -14.86 2.46 -331.34 -0.82 -15.68 16 10 C -0.05 -2.47 6.76 39.91 0.27 -2.20 16 11 C 0.60 27.55 7.72 86.51 0.67 28.21 16 12 O -0.57 -25.69 16.49 -4.26 -0.07 -25.76 16 13 N -0.71 -29.95 4.95 -449.87 -2.23 -32.18 16 14 C 0.14 4.58 2.91 44.25 0.13 4.71 16 15 H 0.15 4.17 7.53 -2.38 -0.02 4.15 16 16 C 0.07 2.01 6.83 71.98 0.49 2.50 16 17 O -0.59 -17.94 13.09 -148.98 -1.95 -19.89 16 18 C 0.49 15.03 7.06 71.24 0.50 15.53 16 19 O -0.53 -20.58 16.75 21.94 0.37 -20.21 16 20 O -0.50 -10.04 13.42 -51.36 -0.69 -10.73 16 21 C -0.16 -7.55 10.55 22.63 0.24 -7.31 16 22 C -0.15 -6.76 6.16 -21.34 -0.13 -6.89 16 23 C -0.08 -2.93 10.06 22.31 0.22 -2.71 16 24 C -0.15 -5.01 9.97 22.03 0.22 -4.80 16 25 C -0.12 -4.33 10.02 22.32 0.22 -4.10 16 26 C -0.12 -5.41 8.98 22.38 0.20 -5.21 16 27 C 0.05 2.57 5.52 39.06 0.22 2.79 16 28 H 0.27 15.72 7.35 -92.71 -0.68 15.03 16 29 H 0.42 19.85 3.65 -92.71 -0.34 19.51 16 30 H 0.11 1.93 8.14 -2.39 -0.02 1.91 16 31 H 0.06 1.73 8.14 -2.38 -0.02 1.71 16 32 H 0.40 8.04 9.12 -74.06 -0.68 7.37 16 33 H 0.43 4.83 9.10 -74.05 -0.67 4.15 16 34 H 0.15 6.24 8.06 -2.91 -0.02 6.22 16 35 H 0.14 4.18 8.06 -2.92 -0.02 4.15 16 36 H 0.15 3.71 8.06 -2.91 -0.02 3.68 16 37 H 0.14 4.28 8.06 -2.91 -0.02 4.26 16 38 H 0.10 4.75 7.26 -2.91 -0.02 4.73 16 Total: -1.00 -73.10 334.59 0.76 -72.33 By element: Atomic # 1 Polarization: 52.24 SS G_CDS: -0.44 Total: 51.81 kcal Atomic # 6 Polarization: -6.40 SS G_CDS: 4.26 Total: -2.14 kcal Atomic # 7 Polarization: -90.86 SS G_CDS: -2.77 Total: -93.63 kcal Atomic # 8 Polarization: -74.25 SS G_CDS: -2.34 Total: -76.60 kcal Atomic # 14 Polarization: 46.17 SS G_CDS: 2.06 Total: 48.23 kcal Total: -73.10 0.76 -72.33 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001610624284.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.164 kcal (2) G-P(sol) polarization free energy of solvation -73.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.332 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.496 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds