Wall clock time and date at job start Tue Mar 31 2020 12:44:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86804 * 120.00379 * 2 1 4 4 H 1.48498 * 109.46895 * 274.98036 * 3 2 1 5 5 H 1.48498 * 109.46782 * 34.97666 * 3 2 1 6 6 H 1.48501 * 109.46950 * 154.98000 * 3 2 1 7 7 C 1.37880 * 119.99785 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99953 * 174.22225 * 7 2 1 9 9 C 1.50701 * 120.00111 * 354.50318 * 7 2 1 10 10 O 1.42897 * 110.88489 * 63.86280 * 9 7 2 11 11 C 1.55147 * 111.00583 * 187.74905 * 9 7 2 12 12 C 1.54323 * 102.94253 * 153.57494 * 11 9 7 13 13 N 1.47023 * 107.27206 * 337.80315 * 12 11 9 14 14 C 1.34773 * 125.64782 * 178.97376 * 13 12 11 15 15 O 1.21606 * 119.99679 * 185.94542 * 14 13 12 16 16 C 1.47514 * 120.00385 * 5.94247 * 14 13 12 17 17 C 1.40088 * 119.93919 * 172.92267 * 16 14 13 18 18 C 1.36287 * 120.39347 * 179.97438 * 17 16 14 19 19 C 1.39858 * 120.04316 * 0.04077 * 18 17 16 20 20 N 1.35814 * 133.52420 * 179.97438 * 19 18 17 21 21 C 1.30778 * 108.79494 * 180.02562 * 20 19 18 22 22 O 1.35103 * 124.91664 * 180.02562 * 21 20 19 23 23 O 1.34315 * 110.16457 * 0.02562 * 21 20 19 24 24 C 1.35313 * 108.12439 * 359.97438 * 23 21 20 25 25 C 1.38107 * 133.76315 * 180.31671 * 24 23 21 26 26 C 1.47469 * 108.71950 * 358.97857 * 13 12 11 27 27 H 0.97011 * 119.99760 * 359.97438 * 1 2 3 28 28 H 0.96700 * 114.00804 * 294.28411 * 10 9 7 29 29 H 1.08998 * 110.72281 * 271.93672 * 11 9 7 30 30 H 1.09007 * 110.72435 * 35.03396 * 11 9 7 31 31 H 1.09001 * 109.88319 * 97.22609 * 12 11 9 32 32 H 1.09006 * 109.88047 * 218.39171 * 12 11 9 33 33 H 1.08007 * 119.80047 * 359.97438 * 17 16 14 34 34 H 1.08004 * 119.98473 * 180.02562 * 18 17 16 35 35 H 0.96699 * 113.99931 * 89.98181 * 22 21 20 36 36 H 1.08001 * 120.18193 * 359.93088 * 25 24 23 37 37 H 1.08995 * 110.34711 * 265.24652 * 26 13 12 38 38 H 1.09004 * 110.40307 * 142.91269 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.3915 2.1071 -1.3948 5 1 1.5032 2.6200 0.8026 6 1 3.5954 1.4119 0.5921 7 6 2.0045 -1.1941 -0.0005 8 1 3.0803 -1.1965 -0.0947 9 6 1.2561 -2.4963 0.1239 10 8 0.3956 -2.6986 -0.9988 11 6 2.2362 -3.6867 0.2952 12 6 1.3884 -4.7251 1.0599 13 7 0.3085 -3.9930 1.7377 14 6 -0.6597 -4.5452 2.4953 15 8 -1.5665 -3.8556 2.9206 16 6 -0.6195 -5.9861 2.8086 17 6 -1.5390 -6.5306 3.7145 18 6 -1.5105 -7.8607 4.0102 19 6 -0.5593 -8.6914 3.4093 20 7 -0.2865 -10.0188 3.4994 21 6 0.7236 -10.2955 2.7162 22 8 1.2644 -11.5232 2.5561 23 8 1.1455 -9.1824 2.0940 24 6 0.3675 -8.1525 2.5003 25 6 0.3322 -6.8052 2.1988 26 6 0.4598 -2.5543 1.4514 27 1 -0.4850 0.8402 0.0004 28 1 -0.3269 -2.0588 -1.0611 29 1 2.5414 -4.0777 -0.6754 30 1 3.1063 -3.3890 0.8804 31 1 0.9654 -5.4459 0.3602 32 1 2.0068 -5.2387 1.7960 33 1 -2.2748 -5.8924 4.1812 34 1 -2.2228 -8.2735 4.7093 35 1 0.8623 -12.0403 1.8448 36 1 1.0393 -6.3869 1.4978 37 1 1.0177 -2.0655 2.2501 38 1 -0.5170 -2.0865 1.3286 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001645889864.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:44:16 Heat of formation + Delta-G solvation = -46.078611 kcal Electronic energy + Delta-G solvation = -26374.307849 eV Core-core repulsion = 22378.297911 eV Total energy + Delta-G solvation = -3996.009939 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.109 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -43.52839 -40.10425 -38.53570 -37.76432 -36.96899 -35.00387 -34.39293 -32.28909 -31.27643 -30.39042 -29.59743 -27.94090 -25.48019 -24.43570 -23.56766 -22.78319 -21.95080 -20.19353 -19.80548 -19.34524 -18.27859 -17.55627 -17.21299 -16.81586 -16.59971 -15.45314 -15.34828 -15.12796 -14.74243 -14.56178 -14.30923 -14.20876 -13.57315 -13.43418 -13.06161 -12.93207 -12.61142 -12.54410 -12.10225 -11.99367 -11.62571 -11.48416 -11.32711 -11.10021 -10.97861 -10.78939 -10.49606 -10.48510 -10.27040 -9.60228 -9.43816 -9.10933 -8.75978 -8.66518 -8.42201 -7.95406 -6.33464 -4.42068 0.11378 0.99224 1.53064 1.89258 2.95900 3.09857 3.17373 3.26134 3.28550 3.42351 3.73253 4.17645 4.22974 4.50220 4.70978 4.80634 4.89742 4.94599 5.06855 5.22117 5.42595 5.43796 5.57491 5.67192 5.78037 5.84294 5.93479 5.97825 6.17964 6.33026 6.37099 6.61073 6.64435 6.71795 6.81021 7.13044 7.18761 7.26341 7.68656 7.96156 8.00398 8.50507 8.61628 9.23743 9.34634 10.74233 Molecular weight = 318.11amu Principal moments of inertia in cm(-1) A = 0.026385 B = 0.003152 C = 0.002914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1060.965023 B = 8879.867349 C = 9607.627545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.072 3.928 3 Si 0.903 3.097 4 H -0.279 1.279 5 H -0.284 1.284 6 H -0.272 1.272 7 C -0.539 4.539 8 H 0.067 0.933 9 C 0.249 3.751 10 O -0.583 6.583 11 C -0.120 4.120 12 C 0.089 3.911 13 N -0.599 5.599 14 C 0.564 3.436 15 O -0.538 6.538 16 C -0.091 4.091 17 C -0.061 4.061 18 C -0.070 4.070 19 C 0.044 3.956 20 N -0.466 5.466 21 C 0.418 3.582 22 O -0.408 6.408 23 O -0.220 6.220 24 C 0.011 3.989 25 C -0.094 4.094 26 C 0.092 3.908 27 H 0.270 0.730 28 H 0.382 0.618 29 H 0.077 0.923 30 H 0.081 0.919 31 H 0.072 0.928 32 H 0.067 0.933 33 H 0.152 0.848 34 H 0.144 0.856 35 H 0.421 0.579 36 H 0.180 0.820 37 H 0.066 0.934 38 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.634 -17.335 3.928 17.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.131 4.131 3 Si 0.730 3.270 4 H -0.205 1.205 5 H -0.209 1.209 6 H -0.196 1.196 7 C -0.577 4.577 8 H 0.085 0.915 9 C 0.208 3.792 10 O -0.391 6.391 11 C -0.158 4.158 12 C -0.033 4.033 13 N -0.331 5.331 14 C 0.353 3.647 15 O -0.418 6.418 16 C -0.094 4.094 17 C -0.081 4.081 18 C -0.089 4.089 19 C -0.069 4.069 20 N -0.210 5.210 21 C 0.169 3.831 22 O -0.216 6.216 23 O -0.114 6.114 24 C -0.039 4.039 25 C -0.112 4.112 26 C -0.029 4.029 27 H 0.081 0.919 28 H 0.232 0.768 29 H 0.096 0.904 30 H 0.100 0.900 31 H 0.090 0.910 32 H 0.085 0.915 33 H 0.170 0.830 34 H 0.161 0.839 35 H 0.281 0.719 36 H 0.197 0.803 37 H 0.084 0.916 38 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 0.477 -17.695 4.854 18.355 hybrid contribution 0.329 1.263 -0.716 1.489 sum 0.806 -16.433 4.138 16.965 Atomic orbital electron populations 1.69693 1.06049 1.27994 1.49161 1.25071 0.95007 0.99780 0.93278 0.86403 0.79902 0.82517 0.78192 1.20481 1.20921 1.19616 1.21432 0.94061 0.90042 1.52186 0.91455 1.19636 0.86105 0.91476 0.81948 1.86108 1.45277 1.58784 1.48972 1.22704 0.97925 0.95516 0.99666 1.22511 0.89399 0.95961 0.95458 1.48679 1.26383 1.10837 1.47154 1.17548 0.81860 0.86000 0.79329 1.90789 1.34181 1.62811 1.53985 1.19972 0.96693 0.93927 0.98816 1.20927 0.97479 0.94212 0.95498 1.19963 0.97387 0.91651 0.99909 1.19797 0.98711 0.89166 0.99198 1.70993 1.12969 1.14316 1.22692 1.22499 0.87939 0.82665 0.90009 1.84884 1.60876 1.17689 1.58173 1.84491 1.52045 1.16706 1.58147 1.19859 0.93460 0.89755 1.00805 1.21729 1.00502 0.87643 1.01319 1.23386 1.03153 0.76725 0.99611 0.91947 0.76760 0.90405 0.90006 0.90973 0.91475 0.83000 0.83858 0.71855 0.80338 0.91619 0.89175 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.05 10.78 55.43 0.60 -22.45 16 2 C 0.07 1.83 5.27 -17.82 -0.09 1.73 16 3 Si 0.90 19.81 29.54 -169.99 -5.02 14.79 16 4 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 5 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 6 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 7 C -0.54 -13.47 8.27 -34.44 -0.28 -13.75 16 8 H 0.07 1.65 7.80 -52.49 -0.41 1.24 16 9 C 0.25 5.70 0.86 -89.63 -0.08 5.62 16 10 O -0.58 -14.18 13.16 -35.23 -0.46 -14.64 16 11 C -0.12 -2.20 6.13 -24.90 -0.15 -2.36 16 12 C 0.09 1.43 4.86 -3.06 -0.01 1.42 16 13 N -0.60 -11.58 3.33 -177.24 -0.59 -12.16 16 14 C 0.56 10.74 7.79 -12.48 -0.10 10.64 16 15 O -0.54 -11.91 16.57 5.27 0.09 -11.82 16 16 C -0.09 -1.38 5.88 -104.92 -0.62 -1.99 16 17 C -0.06 -0.80 9.51 -39.59 -0.38 -1.18 16 18 C -0.07 -0.83 10.03 -39.68 -0.40 -1.23 16 19 C 0.04 0.59 7.23 -84.62 -0.61 -0.02 16 20 N -0.47 -6.00 11.36 -12.72 -0.14 -6.15 16 21 C 0.42 4.64 9.53 52.31 0.50 5.14 16 22 O -0.41 -2.97 13.62 -40.31 -0.55 -3.52 16 23 O -0.22 -2.75 10.79 -20.49 -0.22 -2.97 16 24 C 0.01 0.15 7.40 -38.75 -0.29 -0.14 16 25 C -0.09 -1.28 8.61 -39.13 -0.34 -1.62 16 26 C 0.09 2.09 5.42 -2.50 -0.01 2.07 16 27 H 0.27 6.75 8.31 -40.82 -0.34 6.41 16 28 H 0.38 9.62 7.54 45.56 0.34 9.96 16 29 H 0.08 1.36 8.14 -51.93 -0.42 0.93 16 30 H 0.08 1.41 8.03 -51.93 -0.42 0.99 16 31 H 0.07 1.07 6.74 -51.93 -0.35 0.72 16 32 H 0.07 0.90 6.72 -51.93 -0.35 0.55 16 33 H 0.15 1.88 7.64 -52.48 -0.40 1.48 16 34 H 0.14 1.33 8.06 -52.48 -0.42 0.90 16 35 H 0.42 0.45 9.06 45.56 0.41 0.86 16 36 H 0.18 2.30 2.72 -59.63 -0.16 2.14 16 37 H 0.07 1.52 8.03 -51.93 -0.42 1.11 16 38 H 0.09 2.31 7.34 -51.93 -0.38 1.92 16 LS Contribution 323.41 15.07 4.87 4.87 Total: -1.00 -31.16 323.41 -6.40 -37.56 By element: Atomic # 1 Polarization: 14.26 SS G_CDS: -2.11 Total: 12.15 kcal Atomic # 6 Polarization: 7.20 SS G_CDS: -2.86 Total: 4.33 kcal Atomic # 7 Polarization: -40.62 SS G_CDS: -0.14 Total: -40.76 kcal Atomic # 8 Polarization: -31.80 SS G_CDS: -1.15 Total: -32.95 kcal Atomic # 14 Polarization: 19.81 SS G_CDS: -5.02 Total: 14.79 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -31.16 -6.40 -37.56 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001645889864.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.519 kcal (2) G-P(sol) polarization free energy of solvation -31.155 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.560 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds