Wall clock time and date at job start Tue Mar 31 2020 12:44:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86804 * 120.00379 * 2 1 4 4 H 1.48498 * 109.46895 * 274.98036 * 3 2 1 5 5 H 1.48498 * 109.46782 * 34.97666 * 3 2 1 6 6 H 1.48501 * 109.46950 * 154.98000 * 3 2 1 7 7 C 1.37880 * 119.99785 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99953 * 174.22225 * 7 2 1 9 9 C 1.50701 * 120.00111 * 354.50318 * 7 2 1 10 10 O 1.42897 * 110.88489 * 63.86280 * 9 7 2 11 11 C 1.55147 * 111.00583 * 187.74905 * 9 7 2 12 12 C 1.54323 * 102.94253 * 153.57494 * 11 9 7 13 13 N 1.47023 * 107.27206 * 337.80315 * 12 11 9 14 14 C 1.34773 * 125.64782 * 178.97376 * 13 12 11 15 15 O 1.21606 * 119.99679 * 185.94542 * 14 13 12 16 16 C 1.47514 * 120.00385 * 5.94247 * 14 13 12 17 17 C 1.40088 * 119.93919 * 172.92267 * 16 14 13 18 18 C 1.36287 * 120.39347 * 179.97438 * 17 16 14 19 19 C 1.39858 * 120.04316 * 0.04077 * 18 17 16 20 20 N 1.35814 * 133.52420 * 179.97438 * 19 18 17 21 21 C 1.30778 * 108.79494 * 180.02562 * 20 19 18 22 22 O 1.35103 * 124.91664 * 180.02562 * 21 20 19 23 23 O 1.34315 * 110.16457 * 0.02562 * 21 20 19 24 24 C 1.35313 * 108.12439 * 359.97438 * 23 21 20 25 25 C 1.38107 * 133.76315 * 180.31671 * 24 23 21 26 26 C 1.47469 * 108.71950 * 358.97857 * 13 12 11 27 27 H 0.97011 * 119.99760 * 359.97438 * 1 2 3 28 28 H 0.96700 * 114.00804 * 294.28411 * 10 9 7 29 29 H 1.08998 * 110.72281 * 271.93672 * 11 9 7 30 30 H 1.09007 * 110.72435 * 35.03396 * 11 9 7 31 31 H 1.09001 * 109.88319 * 97.22609 * 12 11 9 32 32 H 1.09006 * 109.88047 * 218.39171 * 12 11 9 33 33 H 1.08007 * 119.80047 * 359.97438 * 17 16 14 34 34 H 1.08004 * 119.98473 * 180.02562 * 18 17 16 35 35 H 0.96699 * 113.99931 * 89.98181 * 22 21 20 36 36 H 1.08001 * 120.18193 * 359.93088 * 25 24 23 37 37 H 1.08995 * 110.34711 * 265.24652 * 26 13 12 38 38 H 1.09004 * 110.40307 * 142.91269 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.3915 2.1071 -1.3948 5 1 1.5032 2.6200 0.8026 6 1 3.5954 1.4119 0.5921 7 6 2.0045 -1.1941 -0.0005 8 1 3.0803 -1.1965 -0.0947 9 6 1.2561 -2.4963 0.1239 10 8 0.3956 -2.6986 -0.9988 11 6 2.2362 -3.6867 0.2952 12 6 1.3884 -4.7251 1.0599 13 7 0.3085 -3.9930 1.7377 14 6 -0.6597 -4.5452 2.4953 15 8 -1.5665 -3.8556 2.9206 16 6 -0.6195 -5.9861 2.8086 17 6 -1.5390 -6.5306 3.7145 18 6 -1.5105 -7.8607 4.0102 19 6 -0.5593 -8.6914 3.4093 20 7 -0.2865 -10.0188 3.4994 21 6 0.7236 -10.2955 2.7162 22 8 1.2644 -11.5232 2.5561 23 8 1.1455 -9.1824 2.0940 24 6 0.3675 -8.1525 2.5003 25 6 0.3322 -6.8052 2.1988 26 6 0.4598 -2.5543 1.4514 27 1 -0.4850 0.8402 0.0004 28 1 -0.3269 -2.0588 -1.0611 29 1 2.5414 -4.0777 -0.6754 30 1 3.1063 -3.3890 0.8804 31 1 0.9654 -5.4459 0.3602 32 1 2.0068 -5.2387 1.7960 33 1 -2.2748 -5.8924 4.1812 34 1 -2.2228 -8.2735 4.7093 35 1 0.8623 -12.0403 1.8448 36 1 1.0393 -6.3869 1.4978 37 1 1.0177 -2.0655 2.2501 38 1 -0.5170 -2.0865 1.3286 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001645889864.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:44:15 Heat of formation + Delta-G solvation = -73.797395 kcal Electronic energy + Delta-G solvation = -26375.509826 eV Core-core repulsion = 22378.297911 eV Total energy + Delta-G solvation = -3997.211915 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.109 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -44.46359 -41.50859 -39.50405 -38.96780 -38.23397 -36.35237 -35.71520 -34.22643 -32.48011 -31.78505 -30.74312 -29.54275 -27.17319 -25.67674 -24.63353 -23.96703 -23.04370 -21.53840 -21.27402 -20.37638 -19.31242 -19.03884 -18.47074 -18.07924 -17.71852 -17.15538 -16.83063 -16.34491 -16.21804 -15.80690 -15.47267 -15.36480 -14.96965 -14.81396 -14.61724 -14.38897 -13.72543 -13.63931 -13.44215 -13.29185 -13.27394 -12.88524 -12.79068 -12.50055 -12.40535 -12.24626 -12.21245 -12.09213 -11.68624 -11.17793 -11.06061 -10.64328 -10.28969 -10.10278 -9.72327 -9.50797 -8.24658 -6.39977 -0.88017 -0.00234 0.67540 0.92550 1.42250 1.45764 1.55077 1.73895 1.93548 2.25564 2.39681 2.55887 3.02208 3.21641 3.35571 3.69304 3.74841 3.83361 3.87869 4.07197 4.14237 4.18854 4.26958 4.45388 4.59185 4.70522 4.71755 4.80448 4.96853 5.02158 5.05341 5.08648 5.24386 5.34535 5.38437 5.47915 5.76296 6.09120 6.17316 6.28801 6.50991 6.68315 7.01642 7.28404 7.37924 8.81092 Molecular weight = 318.11amu Principal moments of inertia in cm(-1) A = 0.026385 B = 0.003152 C = 0.002914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1060.965023 B = 8879.867349 C = 9607.627545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C 0.028 3.972 3 Si 0.961 3.039 4 H -0.278 1.278 5 H -0.286 1.286 6 H -0.264 1.264 7 C -0.555 4.555 8 H 0.069 0.931 9 C 0.231 3.769 10 O -0.588 6.588 11 C -0.115 4.115 12 C 0.090 3.910 13 N -0.605 5.605 14 C 0.562 3.438 15 O -0.582 6.582 16 C -0.109 4.109 17 C -0.059 4.059 18 C -0.062 4.062 19 C 0.043 3.957 20 N -0.489 5.489 21 C 0.440 3.560 22 O -0.402 6.402 23 O -0.223 6.223 24 C -0.002 4.002 25 C -0.081 4.081 26 C 0.106 3.894 27 H 0.269 0.731 28 H 0.373 0.627 29 H 0.089 0.911 30 H 0.094 0.906 31 H 0.090 0.910 32 H 0.104 0.896 33 H 0.154 0.846 34 H 0.171 0.829 35 H 0.449 0.551 36 H 0.188 0.812 37 H 0.051 0.949 38 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.046 -19.912 4.176 20.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.174 4.174 3 Si 0.786 3.214 4 H -0.203 1.203 5 H -0.212 1.212 6 H -0.188 1.188 7 C -0.593 4.593 8 H 0.088 0.912 9 C 0.191 3.809 10 O -0.395 6.395 11 C -0.153 4.153 12 C -0.031 4.031 13 N -0.335 5.335 14 C 0.352 3.648 15 O -0.464 6.464 16 C -0.113 4.113 17 C -0.080 4.080 18 C -0.080 4.080 19 C -0.070 4.070 20 N -0.233 5.233 21 C 0.190 3.810 22 O -0.215 6.215 23 O -0.117 6.117 24 C -0.051 4.051 25 C -0.099 4.099 26 C -0.017 4.017 27 H 0.078 0.922 28 H 0.222 0.778 29 H 0.108 0.892 30 H 0.112 0.888 31 H 0.107 0.893 32 H 0.121 0.879 33 H 0.172 0.828 34 H 0.188 0.812 35 H 0.316 0.684 36 H 0.204 0.796 37 H 0.070 0.930 38 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 1.916 -20.338 5.073 21.049 hybrid contribution -0.073 1.868 -0.806 2.036 sum 1.843 -18.470 4.267 19.046 Atomic orbital electron populations 1.69811 1.07172 1.28367 1.49885 1.25795 0.95683 1.02728 0.93147 0.85498 0.78964 0.78936 0.77977 1.20347 1.21218 1.18791 1.21784 0.94370 0.91260 1.51923 0.91247 1.19881 0.86675 0.93011 0.81311 1.86099 1.45179 1.58428 1.49831 1.22715 0.97500 0.94098 1.00946 1.22743 0.88653 0.95352 0.96331 1.48690 1.27511 1.09680 1.47643 1.18131 0.80855 0.87494 0.78282 1.90753 1.35781 1.64287 1.55575 1.19597 0.98951 0.91598 1.01136 1.20970 0.97058 0.94876 0.95052 1.20161 0.97371 0.90751 0.99738 1.20076 0.98554 0.89603 0.98741 1.71038 1.14273 1.13975 1.24038 1.22737 0.86547 0.83358 0.88327 1.84871 1.60887 1.16114 1.59620 1.84506 1.52011 1.16869 1.58294 1.19791 0.94110 0.89847 1.01382 1.21585 0.99837 0.87757 1.00742 1.22912 1.00660 0.78785 0.99318 0.92196 0.77789 0.89231 0.88778 0.89252 0.87878 0.82799 0.81162 0.68411 0.79619 0.93032 0.93088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -48.89 10.78 21.45 0.23 -48.66 16 2 C 0.03 1.42 5.27 84.66 0.45 1.87 16 3 Si 0.96 40.99 29.54 68.60 2.03 43.02 16 4 H -0.28 -11.72 7.11 99.48 0.71 -11.01 16 5 H -0.29 -12.25 7.11 99.48 0.71 -11.54 16 6 H -0.26 -10.82 7.11 99.48 0.71 -10.11 16 7 C -0.56 -27.97 8.27 25.60 0.21 -27.76 16 8 H 0.07 3.38 7.80 -2.91 -0.02 3.36 16 9 C 0.23 10.71 0.86 -10.15 -0.01 10.70 16 10 O -0.59 -29.18 13.16 -148.98 -1.96 -31.14 16 11 C -0.11 -4.04 6.13 31.78 0.19 -3.85 16 12 C 0.09 2.74 4.86 86.73 0.42 3.16 16 13 N -0.60 -23.49 3.33 -832.93 -2.77 -26.26 16 14 C 0.56 21.70 7.79 86.69 0.68 22.38 16 15 O -0.58 -26.83 16.57 -4.05 -0.07 -26.89 16 16 C -0.11 -3.24 5.88 -20.06 -0.12 -3.36 16 17 C -0.06 -1.50 9.51 22.26 0.21 -1.29 16 18 C -0.06 -1.32 10.03 22.21 0.22 -1.10 16 19 C 0.04 1.04 7.23 39.49 0.29 1.33 16 20 N -0.49 -11.19 11.36 -422.44 -4.80 -15.99 16 21 C 0.44 8.32 9.53 130.40 1.24 9.56 16 22 O -0.40 -4.31 13.62 -61.50 -0.84 -5.14 16 23 O -0.22 -4.87 10.79 9.41 0.10 -4.77 16 24 C 0.00 -0.04 7.40 22.81 0.17 0.13 16 25 C -0.08 -2.06 8.61 22.56 0.19 -1.86 16 26 C 0.11 4.96 5.42 86.85 0.47 5.43 16 27 H 0.27 13.87 8.31 -92.70 -0.77 13.10 16 28 H 0.37 19.62 7.54 -74.06 -0.56 19.06 16 29 H 0.09 2.93 8.14 -2.39 -0.02 2.91 16 30 H 0.09 3.05 8.03 -2.38 -0.02 3.03 16 31 H 0.09 2.44 6.74 -2.39 -0.02 2.42 16 32 H 0.10 2.44 6.72 -2.38 -0.02 2.42 16 33 H 0.15 3.77 7.64 -2.91 -0.02 3.75 16 34 H 0.17 2.66 8.06 -2.91 -0.02 2.64 16 35 H 0.45 -0.92 9.06 -74.06 -0.67 -1.59 16 36 H 0.19 4.29 2.72 -9.62 -0.03 4.26 16 37 H 0.05 2.50 8.03 -2.39 -0.02 2.48 16 38 H 0.05 2.77 7.34 -2.38 -0.02 2.75 16 Total: -1.00 -69.03 323.41 -3.54 -72.57 By element: Atomic # 1 Polarization: 28.00 SS G_CDS: -0.08 Total: 27.92 kcal Atomic # 6 Polarization: 10.72 SS G_CDS: 4.62 Total: 15.34 kcal Atomic # 7 Polarization: -83.56 SS G_CDS: -7.34 Total: -90.90 kcal Atomic # 8 Polarization: -65.18 SS G_CDS: -2.76 Total: -67.94 kcal Atomic # 14 Polarization: 40.99 SS G_CDS: 2.03 Total: 43.02 kcal Total: -69.03 -3.54 -72.57 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001645889864.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.231 kcal (2) G-P(sol) polarization free energy of solvation -69.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.567 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds