Wall clock time and date at job start Tue Mar 31 2020 12:50:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 119.99856 * 2 1 4 4 H 1.48492 * 109.47157 * 240.00233 * 3 2 1 5 5 H 1.48503 * 109.46807 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.46897 * 119.99700 * 3 2 1 7 7 C 1.37874 * 120.00267 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00029 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99692 * 359.97438 * 7 2 1 10 10 O 1.42904 * 110.88747 * 303.88073 * 9 7 2 11 11 C 1.55157 * 111.00201 * 180.02562 * 9 7 2 12 12 C 1.54326 * 102.94187 * 206.38193 * 11 9 7 13 13 N 1.47022 * 107.26907 * 22.19702 * 12 11 9 14 14 C 1.34778 * 125.64673 * 181.02351 * 13 12 11 15 15 O 1.21579 * 119.99799 * 184.85400 * 14 13 12 16 16 C 1.47595 * 119.99932 * 4.85109 * 14 13 12 17 17 C 1.39554 * 120.21772 * 313.40738 * 16 14 13 18 18 C 1.38181 * 120.28655 * 179.78479 * 17 16 14 19 19 C 1.38018 * 120.59781 * 0.49600 * 18 17 16 20 20 C 1.39488 * 120.06618 * 359.74012 * 19 18 17 21 21 N 1.36214 * 133.65830 * 180.02562 * 20 19 18 22 22 C 1.30601 * 108.67725 * 179.97438 * 21 20 19 23 23 O 1.35191 * 124.94290 * 179.97438 * 22 21 20 24 24 O 1.34416 * 110.11281 * 0.02562 * 22 21 20 25 25 C 1.35021 * 108.21365 * 359.97438 * 24 22 21 26 26 C 1.47416 * 108.70199 * 1.27844 * 13 12 11 27 27 H 0.96997 * 120.00335 * 0.02562 * 1 2 3 28 28 H 0.96697 * 113.99980 * 56.11887 * 10 9 7 29 29 H 1.09003 * 110.72389 * 88.02104 * 11 9 7 30 30 H 1.09003 * 110.87341 * 324.81991 * 11 9 7 31 31 H 1.08997 * 109.88333 * 262.77273 * 12 11 9 32 32 H 1.09001 * 109.87848 * 141.60846 * 12 11 9 33 33 H 1.07999 * 119.85889 * 0.02562 * 17 16 14 34 34 H 1.08000 * 119.69823 * 180.23552 * 18 17 16 35 35 H 1.08000 * 119.97014 * 179.75894 * 19 18 17 36 36 H 0.96703 * 113.99771 * 90.03269 * 23 22 21 37 37 H 1.09003 * 110.36707 * 94.48828 * 26 13 12 38 38 H 1.08999 * 110.36759 * 216.80491 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2840 2.7464 0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1939 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 8 0.3522 -2.5684 1.1082 11 6 2.2275 -3.7049 -0.0005 12 6 1.3978 -4.8215 -0.6689 13 7 0.3464 -4.1684 -1.4624 14 6 -0.6003 -4.8008 -2.1837 15 8 -1.3682 -4.1592 -2.8742 16 6 -0.7047 -6.2723 -2.1355 17 6 0.4391 -7.0621 -2.2596 18 6 0.3436 -8.4397 -2.2102 19 6 -0.8819 -9.0535 -2.0481 20 6 -2.0386 -8.2834 -1.9269 21 7 -3.3564 -8.5857 -1.7606 22 6 -4.0370 -7.4724 -1.7046 23 8 -5.3770 -7.3912 -1.5451 24 8 -3.2113 -6.4191 -1.8296 25 6 -1.9517 -6.8846 -1.9707 26 6 0.5030 -2.7075 -1.3433 27 1 -0.4850 0.8400 -0.0004 28 1 -0.2773 -1.8356 1.1506 29 1 2.4976 -3.9825 1.0184 30 1 3.1189 -3.4829 -0.5873 31 1 0.9466 -5.4554 0.0944 32 1 2.0364 -5.4187 -1.3197 33 1 1.4037 -6.5944 -2.3909 34 1 1.2354 -9.0416 -2.3034 35 1 -0.9454 -10.1311 -2.0147 36 1 -5.6612 -7.3467 -0.6219 37 1 1.0939 -2.3203 -2.1735 38 1 -0.4728 -2.2226 -1.3127 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001647247188.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:50:58 Heat of formation + Delta-G solvation = -65.934708 kcal Electronic energy + Delta-G solvation = -26686.971100 eV Core-core repulsion = 22690.100136 eV Total energy + Delta-G solvation = -3996.870964 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.109 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -43.42660 -39.79163 -38.41777 -37.61711 -37.13027 -34.74978 -34.32694 -32.20481 -31.29126 -30.05955 -29.54661 -27.88206 -25.55486 -24.17876 -23.29580 -23.03550 -21.96564 -19.75806 -19.67102 -19.16577 -18.42310 -17.47333 -17.24908 -16.90854 -16.23122 -15.55995 -15.25008 -15.15016 -14.88728 -14.73585 -14.32064 -14.05249 -13.32472 -13.14881 -12.94171 -12.87929 -12.63388 -12.44580 -12.14460 -11.82322 -11.62419 -11.54978 -11.42961 -11.07365 -10.89621 -10.82956 -10.65014 -10.55232 -10.24904 -9.59528 -9.45154 -9.00397 -8.73417 -8.65679 -8.44350 -7.89056 -6.34356 -4.44440 0.26246 0.94892 1.70131 2.02157 2.97137 3.18214 3.21666 3.24866 3.25807 3.33754 3.60365 4.20836 4.28908 4.53083 4.71850 4.78972 4.93175 4.95042 5.06019 5.31974 5.40071 5.54997 5.66475 5.74140 5.77534 5.96424 5.99354 6.01767 6.13539 6.30701 6.42183 6.64120 6.76642 6.80456 6.86764 7.17333 7.26010 7.29190 7.68669 7.92271 8.05411 8.52909 8.59799 9.25540 9.39531 10.73009 Molecular weight = 318.11amu Principal moments of inertia in cm(-1) A = 0.021058 B = 0.003610 C = 0.003281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1329.362613 B = 7753.504648 C = 8531.376149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.071 3.929 3 Si 0.906 3.094 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.274 1.274 7 C -0.540 4.540 8 H 0.068 0.932 9 C 0.250 3.750 10 O -0.584 6.584 11 C -0.119 4.119 12 C 0.100 3.900 13 N -0.599 5.599 14 C 0.561 3.439 15 O -0.535 6.535 16 C -0.082 4.082 17 C -0.065 4.065 18 C -0.118 4.118 19 C -0.047 4.047 20 C 0.025 3.975 21 N -0.466 5.466 22 C 0.419 3.581 23 O -0.407 6.407 24 O -0.208 6.208 25 C 0.063 3.937 26 C 0.093 3.907 27 H 0.273 0.727 28 H 0.386 0.614 29 H 0.076 0.924 30 H 0.079 0.921 31 H 0.063 0.937 32 H 0.059 0.941 33 H 0.151 0.849 34 H 0.146 0.854 35 H 0.142 0.858 36 H 0.421 0.579 37 H 0.064 0.936 38 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.569 -16.255 -1.180 16.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.132 4.132 3 Si 0.733 3.267 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.199 1.199 7 C -0.578 4.578 8 H 0.086 0.914 9 C 0.209 3.791 10 O -0.394 6.394 11 C -0.156 4.156 12 C -0.023 4.023 13 N -0.331 5.331 14 C 0.347 3.653 15 O -0.414 6.414 16 C -0.086 4.086 17 C -0.084 4.084 18 C -0.137 4.137 19 C -0.066 4.066 20 C -0.087 4.087 21 N -0.210 5.210 22 C 0.170 3.830 23 O -0.215 6.215 24 O -0.101 6.101 25 C 0.011 3.989 26 C -0.028 4.028 27 H 0.083 0.917 28 H 0.239 0.761 29 H 0.095 0.905 30 H 0.097 0.903 31 H 0.081 0.919 32 H 0.077 0.923 33 H 0.168 0.832 34 H 0.164 0.836 35 H 0.160 0.840 36 H 0.282 0.718 37 H 0.083 0.917 38 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -1.239 -16.883 -1.995 17.045 hybrid contribution -0.046 2.203 0.310 2.225 sum -1.285 -14.680 -1.686 14.832 Atomic orbital electron populations 1.69552 1.06086 1.28228 1.49579 1.25087 0.95028 0.99860 0.93202 0.86427 0.79513 0.81938 0.78848 1.19948 1.21044 1.19944 1.21458 0.93712 0.90035 1.52593 0.91392 1.19617 0.85714 0.91769 0.81965 1.86064 1.51117 1.53030 1.49227 1.22651 0.97857 0.94745 1.00392 1.22213 0.89413 0.96574 0.94097 1.48666 1.28551 1.09878 1.45968 1.17647 0.81003 0.85991 0.80629 1.90810 1.42614 1.67031 1.40897 1.18920 0.88992 0.94640 1.06062 1.21430 0.97095 0.93559 0.96284 1.21000 0.97504 0.94192 1.01016 1.20406 0.88730 1.00118 0.97302 1.19558 0.91559 0.91169 1.06418 1.71076 1.02629 1.25068 1.22211 1.22504 0.84719 0.79585 0.96234 1.84898 1.08821 1.93841 1.33964 1.84588 1.15911 1.36687 1.72886 1.19708 0.82978 0.92972 1.03216 1.23421 1.02740 0.75915 1.00744 0.91733 0.76127 0.90525 0.90256 0.91902 0.92259 0.83152 0.83630 0.84044 0.71831 0.91739 0.89927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.55 10.72 55.43 0.59 -22.96 16 2 C 0.07 1.82 5.30 -17.82 -0.09 1.73 16 3 Si 0.91 19.91 29.54 -169.99 -5.02 14.89 16 4 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 5 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 6 H -0.27 -5.99 7.11 56.52 0.40 -5.58 16 7 C -0.54 -13.62 8.25 -34.44 -0.28 -13.90 16 8 H 0.07 1.66 7.76 -52.49 -0.41 1.25 16 9 C 0.25 5.88 0.89 -89.51 -0.08 5.80 16 10 O -0.58 -14.74 13.19 -35.23 -0.46 -15.20 16 11 C -0.12 -2.21 6.12 -24.90 -0.15 -2.36 16 12 C 0.10 1.65 5.62 -3.06 -0.02 1.63 16 13 N -0.60 -12.12 3.32 -171.59 -0.57 -12.69 16 14 C 0.56 11.59 7.41 -12.44 -0.09 11.49 16 15 O -0.54 -13.20 17.30 5.30 0.09 -13.10 16 16 C -0.08 -1.35 5.43 -104.97 -0.57 -1.92 16 17 C -0.07 -0.78 8.52 -39.11 -0.33 -1.11 16 18 C -0.12 -1.08 10.00 -39.68 -0.40 -1.48 16 19 C -0.05 -0.49 10.09 -39.20 -0.40 -0.89 16 20 C 0.03 0.36 7.23 -84.71 -0.61 -0.25 16 21 N -0.47 -6.75 11.38 -12.81 -0.15 -6.90 16 22 C 0.42 5.95 9.54 52.24 0.50 6.45 16 23 O -0.41 -4.19 13.62 -40.55 -0.55 -4.74 16 24 O -0.21 -3.65 10.77 -19.89 -0.21 -3.87 16 25 C 0.06 1.06 7.08 -38.22 -0.27 0.79 16 26 C 0.09 2.18 5.63 -2.42 -0.01 2.17 16 27 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 28 H 0.39 10.16 6.93 45.56 0.32 10.47 16 29 H 0.08 1.37 8.14 -51.93 -0.42 0.94 16 30 H 0.08 1.36 8.02 -51.93 -0.42 0.94 16 31 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 32 H 0.06 0.75 5.94 -51.93 -0.31 0.44 16 33 H 0.15 1.51 5.84 -52.49 -0.31 1.20 16 34 H 0.15 0.78 8.06 -52.49 -0.42 0.36 16 35 H 0.14 1.10 8.06 -52.49 -0.42 0.68 16 36 H 0.42 1.69 9.06 45.56 0.41 2.10 16 37 H 0.06 1.53 8.04 -51.93 -0.42 1.12 16 38 H 0.08 2.21 7.69 -51.93 -0.40 1.81 16 LS Contribution 328.25 15.07 4.95 4.95 Total: -1.00 -33.56 328.25 -6.50 -40.07 By element: Atomic # 1 Polarization: 13.77 SS G_CDS: -2.35 Total: 11.42 kcal Atomic # 6 Polarization: 10.95 SS G_CDS: -2.81 Total: 8.14 kcal Atomic # 7 Polarization: -42.43 SS G_CDS: -0.12 Total: -42.55 kcal Atomic # 8 Polarization: -35.77 SS G_CDS: -1.14 Total: -36.91 kcal Atomic # 14 Polarization: 19.91 SS G_CDS: -5.02 Total: 14.89 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -33.56 -6.50 -40.07 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001647247188.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.868 kcal (2) G-P(sol) polarization free energy of solvation -33.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.067 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds